RNA–Protein interactions for RNA: ENST00000479511.1

GAPVD1-217, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 3

Gene GAPVD1, Length 575 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-217ENST00000479511 AEBP2Q6ZN18 517 aaPredicted RBP26.85■■□□□ 1.89
GAPVD1-217ENST00000479511 CHIC1Q5VXU3 224 aa26.34■■□□□ 1.81
GAPVD1-217ENST00000479511 PHF23Q9BUL5 403 aaPredicted RBP23.4■■□□□ 1.34
GAPVD1-217ENST00000479511 SENP3Q9H4L4 574 aaPredicted RBP22.93■■□□□ 1.26
GAPVD1-217ENST00000479511 PLPPR3Q6T4P5 718 aa21.81■■□□□ 1.08
GAPVD1-217ENST00000479511 FOXD1Q16676 465 aa21.32■■□□□ 1
GAPVD1-217ENST00000479511 ADRA2BP18089 450 aa20.59■□□□□ 0.89
GAPVD1-217ENST00000479511 KCNA4P22459 653 aa20.32■□□□□ 0.84
GAPVD1-217ENST00000479511 PPP6R1Q9UPN7 881 aa20.29■□□□□ 0.84
GAPVD1-217ENST00000479511 EHMT2Q96KQ7 1210 aa20.27■□□□□ 0.84
GAPVD1-217ENST00000479511 PIAS4Q8N2W9 510 aaPredicted RBP20.01■□□□□ 0.79
GAPVD1-217ENST00000479511 MSH5O43196 834 aa19.93■□□□□ 0.78
GAPVD1-217ENST00000479511 CSRNP3Q8WYN3 585 aa19.54■□□□□ 0.72
GAPVD1-217ENST00000479511 SLC4A1APQ9BWU0 796 aaKnown RBP19.48■□□□□ 0.71
GAPVD1-217ENST00000479511 PPP4R3CPQ6ZMV5 832 aa19.44■□□□□ 0.7
GAPVD1-217ENST00000479511 POTEDQ86YR6 584 aa19.18■□□□□ 0.66
GAPVD1-217ENST00000479511 NCBP3Q53F19 620 aaKnown RBP19.13■□□□□ 0.65
GAPVD1-217ENST00000479511 NPM3O75607 178 aaKnown RBP18.99■□□□□ 0.63
GAPVD1-217ENST00000479511 ZBTB22O15209 634 aa18.79■□□□□ 0.6
GAPVD1-217ENST00000479511 CNKSR2Q8WXI2 1034 aa18.58■□□□□ 0.56
GAPVD1-217ENST00000479511 SCAF1Q9H7N4 1312 aaKnown RBP18.36■□□□□ 0.53
GAPVD1-217ENST00000479511 MAPK8IP2Q13387 824 aaPredicted RBP18.33■□□□□ 0.52
GAPVD1-217ENST00000479511 FOXD4L1Q9NU39 408 aa18.28■□□□□ 0.52
GAPVD1-217ENST00000479511 DMRT2Q9Y5R5 561 aa18.19■□□□□ 0.5
GAPVD1-217ENST00000479511 DNAJC5BQ9UF47 199 aa18.18■□□□□ 0.5
GAPVD1-217ENST00000479511 SLC24A1O60721 1099 aa18.02■□□□□ 0.48
GAPVD1-217ENST00000479511 RTN4Q9NQC3 1192 aaKnown RBP18.02■□□□□ 0.48
GAPVD1-217ENST00000479511 RNF216Q9NWF9 866 aaPredicted RBP17.94■□□□□ 0.46
GAPVD1-217ENST00000479511 AMER1Q5JTC6 1135 aaPredicted RBP17.87■□□□□ 0.45
GAPVD1-217ENST00000479511 SLC4A2P04920 1241 aa17.71■□□□□ 0.43
GAPVD1-217ENST00000479511 HOXD11P31277 338 aaPredicted RBP17.61■□□□□ 0.41
GAPVD1-217ENST00000479511 FKBP8Q14318 412 aa17.54■□□□□ 0.4
GAPVD1-217ENST00000479511 DCAF8L1A6NGE4 600 aa17.52■□□□□ 0.4
GAPVD1-217ENST00000479511 ATXN8OSP0DMR3 200 aa17.48■□□□□ 0.39
GAPVD1-217ENST00000479511 MYCNP04198 464 aaPredicted RBP17.43■□□□□ 0.38
GAPVD1-217ENST00000479511 ATF5Q9Y2D1 282 aaPredicted RBP17.07■□□□□ 0.32
GAPVD1-217ENST00000479511 CACNB1Q02641 598 aaPredicted RBP17.04■□□□□ 0.32
GAPVD1-217ENST00000479511 RNF39Q9H2S5 420 aa16.99■□□□□ 0.31
GAPVD1-217ENST00000479511 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.81■□□□□ 0.28
GAPVD1-217ENST00000479511 C1QBPQ07021 282 aaKnown RBP16.77■□□□□ 0.28
GAPVD1-217ENST00000479511 SAMD1Q6SPF0 538 aaPredicted RBP16.71■□□□□ 0.27
GAPVD1-217ENST00000479511 U3KPZ7 1027 aaPredicted RBP16.69■□□□□ 0.26
GAPVD1-217ENST00000479511 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.66■□□□□ 0.26
GAPVD1-217ENST00000479511 HNRNPUL2Q1KMD3 747 aaKnown RBP16.66■□□□□ 0.26
GAPVD1-217ENST00000479511 ZNF219Q9P2Y4 722 aaPredicted RBP16.53■□□□□ 0.24
GAPVD1-217ENST00000479511 PLCB2Q00722 1185 aa16.51■□□□□ 0.23
GAPVD1-217ENST00000479511 FBXO3Q9UK99 471 aa16.47■□□□□ 0.23
GAPVD1-217ENST00000479511 SPDYE4A6NLX3 237 aa16.42■□□□□ 0.22
GAPVD1-217ENST00000479511 MKRN4PQ13434 485 aaPredicted RBP16.35■□□□□ 0.21
GAPVD1-217ENST00000479511 PROM2Q8N271 834 aa16.35■□□□□ 0.21
GAPVD1-217ENST00000479511 VASPP50552 380 aaPredicted RBP16.33■□□□□ 0.2
GAPVD1-217ENST00000479511 HAP1P54257 671 aaPredicted RBP16.28■□□□□ 0.2
GAPVD1-217ENST00000479511 IFNLR1Q8IU57 520 aaPredicted RBP16.25■□□□□ 0.19
GAPVD1-217ENST00000479511 DCAF8L2P0C7V8 631 aa16.2■□□□□ 0.18
GAPVD1-217ENST00000479511 APLP2Q06481 763 aa16.18■□□□□ 0.18
GAPVD1-217ENST00000479511 CAPN15O75808 1086 aa16.16■□□□□ 0.18
GAPVD1-217ENST00000479511 PKD2Q13563 968 aa16.15■□□□□ 0.18
GAPVD1-217ENST00000479511 SPINK5Q9NQ38 1064 aaPredicted RBP16.14■□□□□ 0.17
GAPVD1-217ENST00000479511 PRKCSHP14314 528 aaPredicted RBP16.11■□□□□ 0.17
GAPVD1-217ENST00000479511 BCANQ96GW7 911 aa16.08■□□□□ 0.16
GAPVD1-217ENST00000479511 FBLN2P98095 1184 aa16.06■□□□□ 0.16
GAPVD1-217ENST00000479511 VSIG10Q8N0Z9 540 aa16.02■□□□□ 0.16
GAPVD1-217ENST00000479511 DSG3P32926 999 aa15.97■□□□□ 0.15
GAPVD1-217ENST00000479511 TAOK2Q9UL54 1235 aa15.97■□□□□ 0.15
GAPVD1-217ENST00000479511 TRHP20396 242 aaPredicted RBP15.93■□□□□ 0.14
GAPVD1-217ENST00000479511 POLA2Q14181 598 aa15.93■□□□□ 0.14
GAPVD1-217ENST00000479511 KDM2AQ9Y2K7 1162 aa15.89■□□□□ 0.13
GAPVD1-217ENST00000479511 NPM1P06748 294 aaKnown RBP eCLIP15.86■□□□□ 0.13
GAPVD1-217ENST00000479511 BBXQ8WY36 941 aaPredicted RBP15.83■□□□□ 0.12
GAPVD1-217ENST00000479511 SPOCK2Q92563 424 aa15.79■□□□□ 0.12
GAPVD1-217ENST00000479511 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.79■□□□□ 0.12
GAPVD1-217ENST00000479511 ABCB7O75027 752 aa15.78■□□□□ 0.12
GAPVD1-217ENST00000479511 ECM2O94769 699 aaPredicted RBP15.78■□□□□ 0.12
GAPVD1-217ENST00000479511 PAXIP1Q6ZW49 1069 aaPredicted RBP15.78■□□□□ 0.12
GAPVD1-217ENST00000479511 KLHL34Q8N239 644 aa15.75■□□□□ 0.11
GAPVD1-217ENST00000479511 TPRNQ4KMQ1 711 aa15.74■□□□□ 0.11
GAPVD1-217ENST00000479511 CFAP44Q96MT7 982 aa15.72■□□□□ 0.11
GAPVD1-217ENST00000479511 RGL2O15211 777 aa15.66■□□□□ 0.1
GAPVD1-217ENST00000479511 TSHZ2Q9NRE2 1034 aa15.61■□□□□ 0.09
GAPVD1-217ENST00000479511 ZBTB12Q9Y330 459 aaPredicted RBP15.6■□□□□ 0.09
GAPVD1-217ENST00000479511 SPRYD3Q8NCJ5 442 aa15.55■□□□□ 0.08
GAPVD1-217ENST00000479511 STAG3Q9UJ98 1225 aa15.55■□□□□ 0.08
GAPVD1-217ENST00000479511 PLCD3Q8N3E9 789 aa15.52■□□□□ 0.08
GAPVD1-217ENST00000479511 ZNF692Q9BU19 519 aaPredicted RBP15.49■□□□□ 0.07
GAPVD1-217ENST00000479511 MIER1Q8N108 512 aa15.43■□□□□ 0.06
GAPVD1-217ENST00000479511 CHGAP10645 457 aaKnown RBP15.42■□□□□ 0.06
GAPVD1-217ENST00000479511 SSUH2Q9Y2M2 353 aa15.42■□□□□ 0.06
GAPVD1-217ENST00000479511 OSCARQ8IYS5 282 aa15.37■□□□□ 0.05
GAPVD1-217ENST00000479511 PABPN1Q86U42 306 aaKnown RBP eCLIP15.36■□□□□ 0.05
GAPVD1-217ENST00000479511 CIZ1Q9ULV3 898 aaPredicted RBP15.36■□□□□ 0.05
GAPVD1-217ENST00000479511 SPDYE2BA6NHP3 402 aa15.35■□□□□ 0.05
GAPVD1-217ENST00000479511 SPDYE6P0CI01 402 aa15.35■□□□□ 0.05
GAPVD1-217ENST00000479511 SPDYE2Q495Y8 402 aa15.35■□□□□ 0.05
GAPVD1-217ENST00000479511 DNAJC5Q9H3Z4 198 aa15.35■□□□□ 0.05
GAPVD1-217ENST00000479511 RBM42Q9BTD8 480 aaKnown RBP15.28■□□□□ 0.04
GAPVD1-217ENST00000479511 HS6ST3Q8IZP7 471 aa15.24■□□□□ 0.03
GAPVD1-217ENST00000479511 NBR1Q14596 966 aa15.22■□□□□ 0.03
GAPVD1-217ENST00000479511 RNF25Q96BH1 459 aaPredicted RBP15.18■□□□□ 0.02
GAPVD1-217ENST00000479511 ZBTB47Q9UFB7 747 aaPredicted RBP15.17■□□□□ 0.02
GAPVD1-217ENST00000479511 TRIM41Q8WV44 630 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms