RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 DCAF8L2P0C7V8 631 aa21.87■■□□□ 1.09
CHD3-203ENST00000380358 EHMT2Q96KQ7 1210 aa20.76■□□□□ 0.91
CHD3-203ENST00000380358 SUPT5HO00267 1087 aaKnown RBP20.19■□□□□ 0.82
CHD3-203ENST00000380358 TTBK1Q5TCY1 1321 aaPredicted RBP19.96■□□□□ 0.79
CHD3-203ENST00000380358 PELP1Q8IZL8 1130 aaKnown RBP19.9■□□□□ 0.78
CHD3-203ENST00000380358 SHROOM4Q9ULL8 1493 aa19.66■□□□□ 0.74
CHD3-203ENST00000380358 RANGAP1P46060 587 aaPredicted RBP19.65■□□□□ 0.74
CHD3-203ENST00000380358 ERICH6Q7L0X2 663 aa19.65■□□□□ 0.74
CHD3-203ENST00000380358 APLP2Q06481 763 aa19.58■□□□□ 0.73
CHD3-203ENST00000380358 ATP1B4Q9UN42 357 aaPredicted RBP19.46■□□□□ 0.71
CHD3-203ENST00000380358 FAM9AQ8IZU1 332 aaPredicted RBP19.43■□□□□ 0.7
CHD3-203ENST00000380358 MYT1Q01538 1121 aa19.4■□□□□ 0.7
CHD3-203ENST00000380358 PCGF6Q9BYE7 350 aa19.23■□□□□ 0.67
CHD3-203ENST00000380358 CCER1Q8TC90 406 aaPredicted RBP19.09■□□□□ 0.65
CHD3-203ENST00000380358 CHIC1Q5VXU3 224 aa19.08■□□□□ 0.64
CHD3-203ENST00000380358 YTHDC1Q96MU7 727 aaKnown RBP19.04■□□□□ 0.64
CHD3-203ENST00000380358 CNGB1Q14028 1251 aaPredicted RBP18.98■□□□□ 0.63
CHD3-203ENST00000380358 MYT1LQ9UL68 1186 aa18.97■□□□□ 0.63
CHD3-203ENST00000380358 POLR3GLQ9BT43 218 aa18.9■□□□□ 0.62
CHD3-203ENST00000380358 NEFLP07196 543 aa18.77■□□□□ 0.6
CHD3-203ENST00000380358 CENPBP07199 599 aaPredicted RBP18.74■□□□□ 0.59
CHD3-203ENST00000380358 SLC4A1APQ9BWU0 796 aaKnown RBP18.72■□□□□ 0.59
CHD3-203ENST00000380358 PPARGC1BQ86YN6 1023 aaKnown RBP18.71■□□□□ 0.59
CHD3-203ENST00000380358 DAXXQ9UER7 740 aaPredicted RBP18.68■□□□□ 0.58
CHD3-203ENST00000380358 UBTFP17480 764 aaKnown RBP18.56■□□□□ 0.56
CHD3-203ENST00000380358 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.54■□□□□ 0.56
CHD3-203ENST00000380358 HNRNPUL2Q1KMD3 747 aaKnown RBP18.54■□□□□ 0.56
CHD3-203ENST00000380358 ITGAEP38570 1179 aa18.51■□□□□ 0.55
CHD3-203ENST00000380358 BCL11AQ9H165 835 aa18.46■□□□□ 0.55
CHD3-203ENST00000380358 TRIM41Q8WV44 630 aa18.32■□□□□ 0.52
CHD3-203ENST00000380358 SLC24A1O60721 1099 aa18.31■□□□□ 0.52
CHD3-203ENST00000380358 CLSPNQ9HAW4 1339 aa18.3■□□□□ 0.52
CHD3-203ENST00000380358 ZNF316A6NFI3 1004 aaPredicted RBP18.2■□□□□ 0.5
CHD3-203ENST00000380358 ZEB1P37275 1124 aaPredicted RBP18.06■□□□□ 0.48
CHD3-203ENST00000380358 PLPPR3Q6T4P5 718 aa17.95■□□□□ 0.46
CHD3-203ENST00000380358 RTL5Q5HYW3 569 aaPredicted RBP17.94■□□□□ 0.46
CHD3-203ENST00000380358 BCANQ96GW7 911 aa17.92■□□□□ 0.46
CHD3-203ENST00000380358 ZBTB47Q9UFB7 747 aaPredicted RBP17.82■□□□□ 0.44
CHD3-203ENST00000380358 ZNF326Q5BKZ1 582 aaKnown RBP17.79■□□□□ 0.44
CHD3-203ENST00000380358 TRIM52Q96A61 297 aa17.71■□□□□ 0.43
CHD3-203ENST00000380358 NEUROD1Q13562 356 aa17.68■□□□□ 0.42
CHD3-203ENST00000380358 FAM50AQ14320 339 aaKnown RBP17.67■□□□□ 0.42
CHD3-203ENST00000380358 CANXP27824 592 aaKnown RBP17.65■□□□□ 0.42
CHD3-203ENST00000380358 A0A0G2JS52 829 aa17.59■□□□□ 0.41
CHD3-203ENST00000380358 FBLN2P98095 1184 aa17.55■□□□□ 0.4
CHD3-203ENST00000380358 PLEKHG5O94827 1062 aa17.55■□□□□ 0.4
CHD3-203ENST00000380358 HRCP23327 699 aa17.52■□□□□ 0.4
CHD3-203ENST00000380358 ARID3CA6NKF2 412 aa17.51■□□□□ 0.39
CHD3-203ENST00000380358 NPM2Q86SE8 214 aaKnown RBP17.49■□□□□ 0.39
CHD3-203ENST00000380358 LOC105371045A0A1W2PR82 267 aa17.48■□□□□ 0.39
CHD3-203ENST00000380358 NISCHQ9Y2I1 1504 aa17.47■□□□□ 0.39
CHD3-203ENST00000380358 SCAF1Q9H7N4 1312 aaKnown RBP17.47■□□□□ 0.39
CHD3-203ENST00000380358 TRIM26Q12899 539 aaPredicted RBP17.43■□□□□ 0.38
CHD3-203ENST00000380358 TULP1O00294 542 aaPredicted RBP17.43■□□□□ 0.38
CHD3-203ENST00000380358 EIF5BO60841 1220 aaKnown RBP17.41■□□□□ 0.38
CHD3-203ENST00000380358 ARXQ96QS3 562 aa17.41■□□□□ 0.38
CHD3-203ENST00000380358 SENP3Q9H4L4 574 aaPredicted RBP17.4■□□□□ 0.38
CHD3-203ENST00000380358 NEFMP07197 916 aa17.4■□□□□ 0.38
CHD3-203ENST00000380358 DIEXFQ68CQ4 756 aaKnown RBP17.31■□□□□ 0.36
CHD3-203ENST00000380358 CDK11AQ9UQ88 783 aaPredicted RBP17.3■□□□□ 0.36
CHD3-203ENST00000380358 HSP90AA1P07900 732 aaKnown RBP17.28■□□□□ 0.36
CHD3-203ENST00000380358 CHGAP10645 457 aaKnown RBP17.28■□□□□ 0.36
CHD3-203ENST00000380358 NCBP3Q53F19 620 aaKnown RBP17.28■□□□□ 0.36
CHD3-203ENST00000380358 ZBTB7CA1YPR0 619 aa17.27■□□□□ 0.36
CHD3-203ENST00000380358 SALL2Q9Y467 1007 aaPredicted RBP17.24■□□□□ 0.35
CHD3-203ENST00000380358 ESF1Q9H501 851 aaKnown RBP17.23■□□□□ 0.35
CHD3-203ENST00000380358 STAG3Q9UJ98 1225 aa17.23■□□□□ 0.35
CHD3-203ENST00000380358 ANP32CO43423 234 aa17.21■□□□□ 0.34
CHD3-203ENST00000380358 ZNF777Q9ULD5 760 aaPredicted RBP17.19■□□□□ 0.34
CHD3-203ENST00000380358 CDK11BP21127 795 aaKnown RBP17.15■□□□□ 0.34
CHD3-203ENST00000380358 P3H3Q8IVL6 736 aa17.15■□□□□ 0.34
CHD3-203ENST00000380358 ANP32BQ92688 251 aaKnown RBP17.13■□□□□ 0.33
CHD3-203ENST00000380358 TPRNQ4KMQ1 711 aa17.12■□□□□ 0.33
CHD3-203ENST00000380358 TAOK2Q9UL54 1235 aa17.11■□□□□ 0.33
CHD3-203ENST00000380358 GTF3C3Q9Y5Q9 886 aa17.1■□□□□ 0.33
CHD3-203ENST00000380358 ANP32AP39687 249 aaKnown RBP17.07■□□□□ 0.32
CHD3-203ENST00000380358 C14orf37Q86TY3 774 aa17.03■□□□□ 0.32
CHD3-203ENST00000380358 PABPN1Q86U42 306 aaKnown RBP eCLIP17■□□□□ 0.31
CHD3-203ENST00000380358 NBR1Q14596 966 aa17■□□□□ 0.31
CHD3-203ENST00000380358 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.9■□□□□ 0.34e-6■■□□□ 13.2
CHD3-203ENST00000380358 FAM9BQ8IZU0 186 aa16.88■□□□□ 0.29
CHD3-203ENST00000380358 UPF2Q9HAU5 1272 aaKnown RBP16.87■□□□□ 0.29
CHD3-203ENST00000380358 SENP3-EIF4A1A0A087X0R7 540 aa16.86■□□□□ 0.29
CHD3-203ENST00000380358 HAP1P54257 671 aaPredicted RBP16.85■□□□□ 0.29
CHD3-203ENST00000380358 AMER1Q5JTC6 1135 aaPredicted RBP16.8■□□□□ 0.28
CHD3-203ENST00000380358 FKBP8Q14318 412 aa16.8■□□□□ 0.28
CHD3-203ENST00000380358 NPHP1O15259 732 aa16.79■□□□□ 0.28
CHD3-203ENST00000380358 CLSTN1O94985 981 aa16.76■□□□□ 0.27
CHD3-203ENST00000380358 IRX6P78412 446 aaPredicted RBP16.75■□□□□ 0.27
CHD3-203ENST00000380358 KDM2AQ9Y2K7 1162 aa16.74■□□□□ 0.27
CHD3-203ENST00000380358 NCLP19338 710 aaKnown RBP16.71■□□□□ 0.27
CHD3-203ENST00000380358 HNRNPUQ00839 825 aaKnown RBP eCLIP16.7■□□□□ 0.26
CHD3-203ENST00000380358 LMOD2Q6P5Q4 547 aa16.68■□□□□ 0.26
CHD3-203ENST00000380358 NPM1P06748 294 aaKnown RBP eCLIP16.67■□□□□ 0.26
CHD3-203ENST00000380358 GLIPR1L2Q4G1C9 344 aa16.66■□□□□ 0.26
CHD3-203ENST00000380358 PPM1GO15355 546 aaPredicted RBP16.64■□□□□ 0.25
CHD3-203ENST00000380358 CHIC2Q9UKJ5 165 aa16.64■□□□□ 0.25
CHD3-203ENST00000380358 MYH16Q9H6N6 1097 aa16.63■□□□□ 0.25
CHD3-203ENST00000380358 WDR43Q15061 677 aaKnown RBP eCLIP16.63■□□□□ 0.256e-7■■□□□ 12.2
CHD3-203ENST00000380358 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms