RNA–Protein interactions for RNA: ENST00000378078.4

RGP1-201, Transcript of RGP1 homolog, RAB6A GEF complex partner 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RGP1, Length 7,018 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGP1-201ENST00000378078 DCAF8L2P0C7V8 631 aa28.84■■■□□ 2.21
RGP1-201ENST00000378078 EHMT2Q96KQ7 1210 aa27.29■■□□□ 1.96
RGP1-201ENST00000378078 SUPT5HO00267 1087 aaKnown RBP26.75■■□□□ 1.87
RGP1-201ENST00000378078 SHROOM4Q9ULL8 1493 aa26.26■■□□□ 1.79
RGP1-201ENST00000378078 TTBK1Q5TCY1 1321 aaPredicted RBP26.24■■□□□ 1.79
RGP1-201ENST00000378078 PELP1Q8IZL8 1130 aaKnown RBP25.9■■□□□ 1.74
RGP1-201ENST00000378078 RANGAP1P46060 587 aaPredicted RBP25.87■■□□□ 1.73
RGP1-201ENST00000378078 APLP2Q06481 763 aa25.73■■□□□ 1.71
RGP1-201ENST00000378078 FAM9AQ8IZU1 332 aaPredicted RBP25.65■■□□□ 1.7
RGP1-201ENST00000378078 ATP1B4Q9UN42 357 aaPredicted RBP25.58■■□□□ 1.69
RGP1-201ENST00000378078 ERICH6Q7L0X2 663 aa25.53■■□□□ 1.68
RGP1-201ENST00000378078 PCGF6Q9BYE7 350 aa25.28■■□□□ 1.64
RGP1-201ENST00000378078 MYT1Q01538 1121 aa25.05■■□□□ 1.6
RGP1-201ENST00000378078 YTHDC1Q96MU7 727 aaKnown RBP24.98■■□□□ 1.59
RGP1-201ENST00000378078 CHIC1Q5VXU3 224 aa24.95■■□□□ 1.58
RGP1-201ENST00000378078 CCER1Q8TC90 406 aaPredicted RBP24.84■■□□□ 1.57
RGP1-201ENST00000378078 MYT1LQ9UL68 1186 aa24.84■■□□□ 1.57
RGP1-201ENST00000378078 CNGB1Q14028 1251 aaPredicted RBP24.79■■□□□ 1.56
RGP1-201ENST00000378078 POLR3GLQ9BT43 218 aa24.73■■□□□ 1.55
RGP1-201ENST00000378078 PPARGC1BQ86YN6 1023 aaKnown RBP24.73■■□□□ 1.55
RGP1-201ENST00000378078 CENPBP07199 599 aaPredicted RBP24.56■■□□□ 1.52
RGP1-201ENST00000378078 UBTFP17480 764 aaKnown RBP24.55■■□□□ 1.52
RGP1-201ENST00000378078 NEFLP07196 543 aa24.52■■□□□ 1.52
RGP1-201ENST00000378078 SLC4A1APQ9BWU0 796 aaKnown RBP24.47■■□□□ 1.51
RGP1-201ENST00000378078 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.39■■□□□ 1.5
RGP1-201ENST00000378078 HNRNPUL2Q1KMD3 747 aaKnown RBP24.39■■□□□ 1.5
RGP1-201ENST00000378078 ITGAEP38570 1179 aa24.38■■□□□ 1.49
RGP1-201ENST00000378078 TRIM41Q8WV44 630 aa24.35■■□□□ 1.49
RGP1-201ENST00000378078 DAXXQ9UER7 740 aaPredicted RBP24.3■■□□□ 1.48
RGP1-201ENST00000378078 NISCHQ9Y2I1 1504 aa24.15■■□□□ 1.46
RGP1-201ENST00000378078 BCL11AQ9H165 835 aa24.01■■□□□ 1.43
RGP1-201ENST00000378078 ZEB1P37275 1124 aaPredicted RBP23.9■■□□□ 1.42
RGP1-201ENST00000378078 SLC24A1O60721 1099 aa23.87■■□□□ 1.41
RGP1-201ENST00000378078 CLSPNQ9HAW4 1339 aa23.84■■□□□ 1.41
RGP1-201ENST00000378078 ZNF316A6NFI3 1004 aaPredicted RBP23.74■■□□□ 1.39
RGP1-201ENST00000378078 PLPPR3Q6T4P5 718 aa23.53■■□□□ 1.36
RGP1-201ENST00000378078 BCANQ96GW7 911 aa23.49■■□□□ 1.35
RGP1-201ENST00000378078 ZNF326Q5BKZ1 582 aaKnown RBP23.4■■□□□ 1.34
RGP1-201ENST00000378078 FAM50AQ14320 339 aaKnown RBP23.38■■□□□ 1.33
RGP1-201ENST00000378078 TRIM52Q96A61 297 aa23.37■■□□□ 1.33
RGP1-201ENST00000378078 RTL5Q5HYW3 569 aaPredicted RBP23.37■■□□□ 1.33
RGP1-201ENST00000378078 NEUROD1Q13562 356 aa23.35■■□□□ 1.33
RGP1-201ENST00000378078 LOC105371045A0A1W2PR82 267 aa23.31■■□□□ 1.32
RGP1-201ENST00000378078 ZBTB47Q9UFB7 747 aaPredicted RBP23.24■■□□□ 1.31
RGP1-201ENST00000378078 FBLN2P98095 1184 aa23.22■■□□□ 1.31
RGP1-201ENST00000378078 TRIM26Q12899 539 aaPredicted RBP23.2■■□□□ 1.3
RGP1-201ENST00000378078 HRCP23327 699 aa23.18■■□□□ 1.3
RGP1-201ENST00000378078 ARID3CA6NKF2 412 aa23.17■■□□□ 1.3
RGP1-201ENST00000378078 CANXP27824 592 aaKnown RBP23.12■■□□□ 1.29
RGP1-201ENST00000378078 PLEKHG5O94827 1062 aa22.94■■□□□ 1.26
RGP1-201ENST00000378078 A0A0G2JS52 829 aa22.91■■□□□ 1.26
RGP1-201ENST00000378078 NPM2Q86SE8 214 aaKnown RBP22.9■■□□□ 1.26
RGP1-201ENST00000378078 DIEXFQ68CQ4 756 aaKnown RBP22.89■■□□□ 1.25
RGP1-201ENST00000378078 SENP3Q9H4L4 574 aaPredicted RBP22.88■■□□□ 1.25
RGP1-201ENST00000378078 SCAF1Q9H7N4 1312 aaKnown RBP22.86■■□□□ 1.25
RGP1-201ENST00000378078 PABPN1Q86U42 306 aaKnown RBP eCLIP22.82■■□□□ 1.24
RGP1-201ENST00000378078 NEFMP07197 916 aa22.78■■□□□ 1.24
RGP1-201ENST00000378078 P3H3Q8IVL6 736 aa22.77■■□□□ 1.24
RGP1-201ENST00000378078 ZNF777Q9ULD5 760 aaPredicted RBP22.74■■□□□ 1.23
RGP1-201ENST00000378078 CHGAP10645 457 aaKnown RBP22.73■■□□□ 1.23
RGP1-201ENST00000378078 CDK11AQ9UQ88 783 aaPredicted RBP22.71■■□□□ 1.23
RGP1-201ENST00000378078 ANP32CO43423 234 aa22.7■■□□□ 1.22
RGP1-201ENST00000378078 ARXQ96QS3 562 aa22.67■■□□□ 1.22
RGP1-201ENST00000378078 ZBTB7CA1YPR0 619 aa22.65■■□□□ 1.22
RGP1-201ENST00000378078 STAG3Q9UJ98 1225 aa22.65■■□□□ 1.22
RGP1-201ENST00000378078 ESF1Q9H501 851 aaKnown RBP22.63■■□□□ 1.21
RGP1-201ENST00000378078 SALL2Q9Y467 1007 aaPredicted RBP22.63■■□□□ 1.21
RGP1-201ENST00000378078 TULP1O00294 542 aaPredicted RBP22.6■■□□□ 1.21
RGP1-201ENST00000378078 GTF3C3Q9Y5Q9 886 aa22.55■■□□□ 1.2
RGP1-201ENST00000378078 EIF5BO60841 1220 aaKnown RBP22.55■■□□□ 1.2
RGP1-201ENST00000378078 HSP90AA1P07900 732 aaKnown RBP22.54■■□□□ 1.2
RGP1-201ENST00000378078 ANP32AP39687 249 aaKnown RBP22.37■■□□□ 1.17
RGP1-201ENST00000378078 TPRNQ4KMQ1 711 aa22.34■■□□□ 1.17
RGP1-201ENST00000378078 C14orf37Q86TY3 774 aa22.33■■□□□ 1.17
RGP1-201ENST00000378078 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.33■■□□□ 1.179e-7■□□□□ 8.9
RGP1-201ENST00000378078 ANP32BQ92688 251 aaKnown RBP22.32■■□□□ 1.16
RGP1-201ENST00000378078 TAOK2Q9UL54 1235 aa22.29■■□□□ 1.16
RGP1-201ENST00000378078 NCBP3Q53F19 620 aaKnown RBP22.26■■□□□ 1.15
RGP1-201ENST00000378078 NBR1Q14596 966 aa22.26■■□□□ 1.15
RGP1-201ENST00000378078 FAM9BQ8IZU0 186 aa22.25■■□□□ 1.15
RGP1-201ENST00000378078 ABCC9O60706 1549 aa22.25■■□□□ 1.15
RGP1-201ENST00000378078 CDK11BP21127 795 aaKnown RBP22.21■■□□□ 1.15
RGP1-201ENST00000378078 SENP3-EIF4A1A0A087X0R7 540 aa22.18■■□□□ 1.14
RGP1-201ENST00000378078 FKBP8Q14318 412 aa22.14■■□□□ 1.13
RGP1-201ENST00000378078 KDM2AQ9Y2K7 1162 aa22.12■■□□□ 1.13
RGP1-201ENST00000378078 UPF2Q9HAU5 1272 aaKnown RBP22.08■■□□□ 1.13
RGP1-201ENST00000378078 HAP1P54257 671 aaPredicted RBP22.07■■□□□ 1.12
RGP1-201ENST00000378078 IRX6P78412 446 aaPredicted RBP22.06■■□□□ 1.12
RGP1-201ENST00000378078 CHIC2Q9UKJ5 165 aa22.06■■□□□ 1.12
RGP1-201ENST00000378078 NPM1P06748 294 aaKnown RBP eCLIP22.03■■□□□ 1.12
RGP1-201ENST00000378078 HNRNPUQ00839 825 aaKnown RBP eCLIP22.02■■□□□ 1.11
RGP1-201ENST00000378078 HIRIP3Q9BW71 556 aaPredicted RBP21.95■■□□□ 1.1
RGP1-201ENST00000378078 DDX10Q13206 875 aaKnown RBP21.93■■□□□ 1.1
RGP1-201ENST00000378078 NPHP1O15259 732 aa21.92■■□□□ 1.1
RGP1-201ENST00000378078 WDR43Q15061 677 aaKnown RBP eCLIP21.92■■□□□ 1.1
RGP1-201ENST00000378078 PPM1GO15355 546 aaPredicted RBP21.87■■□□□ 1.09
RGP1-201ENST00000378078 ARID4BQ4LE39 1312 aaPredicted RBP21.87■■□□□ 1.09
RGP1-201ENST00000378078 LMOD2Q6P5Q4 547 aa21.86■■□□□ 1.09
RGP1-201ENST00000378078 TMC1Q8TDI8 760 aa21.85■■□□□ 1.09
RGP1-201ENST00000378078 NCLP19338 710 aaKnown RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms