RNA–Protein interactions for RNA: ENST00000264645.11

CASC3-201, Transcript of CASC3, exon junction complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CASC3, Length 4,116 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-201ENST00000264645 HNRNPLP14866 589 aaKnown RBP eCLIP15.36■□□□□ 0.053e-29■■■■■ 57.8
CASC3-201ENST00000264645 TIA1P31483 386 aaKnown RBP eCLIP14.4□□□□□ -0.13e-13■■■■■ 52.3
CASC3-201ENST00000264645 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.03■□□□□ -02e-12■□□□□ 8
CASC3-201ENST00000264645 GTF2F1P35269 517 aaKnown RBP eCLIP17.95■□□□□ 0.463e-11■■■□□ 18.8
CASC3-201ENST00000264645 AARSP49588 968 aaKnown RBP eCLIP16.37■□□□□ 0.217e-10■■■■□ 22.7
CASC3-201ENST00000264645 SMNDC1O75940 238 aaKnown RBP eCLIP15.85■□□□□ 0.132e-9■■■□□ 17.9
CASC3-201ENST00000264645 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.48■□□□□ 0.233e-9■■□□□ 12.5
CASC3-201ENST00000264645 LSM11P83369 360 aaKnown RBP eCLIP13.92□□□□□ -0.184e-9■■■□□ 19.1
CASC3-201ENST00000264645 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.12□□□□□ -0.159e-9■■□□□ 12.3
CASC3-201ENST00000264645 UPF1Q92900 1129 aaKnown RBP eCLIP14.39□□□□□ -0.111e-8■■■□□ 18.7
CASC3-201ENST00000264645 KHSRPQ92945 711 aaKnown RBP eCLIP14.53□□□□□ -0.081e-8■□□□□ 8.7
CASC3-201ENST00000264645 RBM15Q96T37 977 aaKnown RBP eCLIP16.09■□□□□ 0.173e-8■■■■■ 27.2
CASC3-201ENST00000264645 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.39■□□□□ 0.373e-8■■□□□ 13.5
CASC3-201ENST00000264645 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.93■□□□□ 0.144e-8■□□□□ 9.5
CASC3-201ENST00000264645 YBX3P16989 372 aaKnown RBP eCLIP15.18■□□□□ 0.024e-8■■■□□ 18.1
CASC3-201ENST00000264645 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.17■□□□□ 0.185e-8■■□□□ 13
CASC3-201ENST00000264645 AGGF1Q8N302 714 aaeCLIP16.2■□□□□ 0.187e-8■■■■□ 23.7
CASC3-201ENST00000264645 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.35■□□□□ 0.218e-8■■□□□ 12.1
CASC3-201ENST00000264645 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.56■□□□□ 0.721e-7■■□□□ 13.4
CASC3-201ENST00000264645 NOLC1Q14978 699 aaKnown RBP eCLIP18.08■□□□□ 0.492e-7■■■■□ 23.5
CASC3-201ENST00000264645 TROVE2P10155 538 aaKnown RBP eCLIP16.47■□□□□ 0.232e-7■□□□□ 11.1
CASC3-201ENST00000264645 U2AF1Q01081 240 aaKnown RBP eCLIP18.9■□□□□ 0.622e-7■■■□□ 15
CASC3-201ENST00000264645 ZRANB2O95218 330 aaKnown RBP eCLIP16.66■□□□□ 0.263e-7■■■■■ 27.8
CASC3-201ENST00000264645 PPIGQ13427 754 aaKnown RBP eCLIP14.62□□□□□ -0.073e-7■□□□□ 11.1
CASC3-201ENST00000264645 PUM1Q14671 1186 aaKnown RBP eCLIP14.23□□□□□ -0.133e-7■■■□□ 15.5
CASC3-201ENST00000264645 AKAP1Q92667 903 aaKnown RBP eCLIP14.77□□□□□ -0.053e-7■□□□□ 8.1
CASC3-201ENST00000264645 HNRNPCP07910 306 aaKnown RBP eCLIP16.21■□□□□ 0.193e-7■■■■□ 19.3
CASC3-201ENST00000264645 U2AF2P26368 475 aaKnown RBP eCLIP17.91■□□□□ 0.464e-7■■■□□ 14.7
CASC3-201ENST00000264645 ZNF622Q969S3 477 aaKnown RBP eCLIP16.79■□□□□ 0.284e-7■■■□□ 14.9
CASC3-201ENST00000264645 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.3■□□□□ 0.364e-7■■□□□ 13.3
CASC3-201ENST00000264645 EIF3HO15372 352 aaKnown RBP eCLIP16.65■□□□□ 0.265e-7■■□□□ 13.1
CASC3-201ENST00000264645 GPKOWQ92917 476 aaPredicted RBP eCLIP16.57■□□□□ 0.245e-7■■■■□ 23.9
CASC3-201ENST00000264645 RBM22Q9NW64 420 aaKnown RBP eCLIP15.23■□□□□ 0.036e-7■■■■□ 20.6
CASC3-201ENST00000264645 SF3B4Q15427 424 aaKnown RBP eCLIP14.87□□□□□ -0.036e-7■■■■□ 20
CASC3-201ENST00000264645 MATR3P43243 847 aaKnown RBP eCLIP17.37■□□□□ 0.376e-7■□□□□ 8.4
CASC3-201ENST00000264645 AQRO60306 1485 aaKnown RBP eCLIP18.36■□□□□ 0.537e-7■■■□□ 18.7
CASC3-201ENST00000264645 EFTUD2Q15029 972 aaKnown RBP eCLIP15.77■□□□□ 0.127e-7■■■■■ 42.4
CASC3-201ENST00000264645 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.64■□□□□ 0.267e-7■■■■■ 52.3
CASC3-201ENST00000264645 DDX6P26196 483 aaKnown RBP eCLIP14.27□□□□□ -0.131e-6■□□□□ 10.8
CASC3-201ENST00000264645 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.35■□□□□ 0.051e-6■□□□□ 8.4
CASC3-201ENST00000264645 PABPC4Q13310 644 aaKnown RBP eCLIP16.33■□□□□ 0.21e-6■■□□□ 14
CASC3-201ENST00000264645 LARP4Q71RC2 724 aaKnown RBP eCLIP14.74□□□□□ -0.051e-6■■■□□ 19.2
CASC3-201ENST00000264645 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.37□□□□□ -0.431e-6■■■■□ 22
CASC3-201ENST00000264645 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18■□□□□ 0.471e-6■■□□□ 14.4
CASC3-201ENST00000264645 TRA2AQ13595 282 aaKnown RBP eCLIP12.81□□□□□ -0.362e-6■■■□□ 15.8
CASC3-201ENST00000264645 PRPF4O43172 522 aaKnown RBP eCLIP15.59■□□□□ 0.092e-6■□□□□ 9.3
CASC3-201ENST00000264645 RBM5P52756 815 aaKnown RBP eCLIP16.52■□□□□ 0.232e-6■■■■□ 23
CASC3-201ENST00000264645 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.19■□□□□ 0.023e-6■■■■□ 23.8
CASC3-201ENST00000264645 FXR2P51116 673 aaKnown RBP eCLIP15.92■□□□□ 0.143e-6■■□□□ 14.2
CASC3-201ENST00000264645 ZC3H11AO75152 810 aaKnown RBP eCLIP15.53■□□□□ 0.083e-6■■■□□ 17.8
CASC3-201ENST00000264645 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.65■□□□□ 0.263e-6■■■□□ 15
CASC3-201ENST00000264645 SRSF1Q07955 248 aaKnown RBP eCLIP12.21□□□□□ -0.454e-6■■■■□ 20.2
CASC3-201ENST00000264645 TARDBPQ13148 414 aaKnown RBP eCLIP14.7□□□□□ -0.064e-6■■■■□ 19.5
CASC3-201ENST00000264645 HNRNPMP52272 730 aaKnown RBP eCLIP18.71■□□□□ 0.595e-6■■■■□ 21
CASC3-201ENST00000264645 SF3A3Q12874 501 aaKnown RBP eCLIP17.06■□□□□ 0.325e-6■■□□□ 14.3
CASC3-201ENST00000264645 PABPN1Q86U42 306 aaKnown RBP eCLIP20.47■□□□□ 0.875e-6■■■■□ 22.2
CASC3-201ENST00000264645 SF3B1O75533 1304 aaKnown RBP eCLIP15.22■□□□□ 0.035e-6■■■■□ 20.1
CASC3-201ENST00000264645 TIAL1Q01085 375 aaKnown RBP eCLIP14.03□□□□□ -0.166e-6■□□□□ 8.9
CASC3-201ENST00000264645 HLTFQ14527 1009 aaKnown RBP eCLIP17.27■□□□□ 0.369e-6■□□□□ 9.4
CASC3-201ENST00000264645 RBFOX2O43251 390 aaKnown RBP eCLIP12.69□□□□□ -0.381e-5■■■■□ 20.3
Retrieved 60 of 60 RNA–protein pairs in 17.3 ms