RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 PtprmP28828 1452 aa21.02■□□□□ 0.95
Shh-201ENSMUST00000002708 Spryd3E9Q9B3 442 aa21■□□□□ 0.95
Shh-201ENSMUST00000002708 Znf521Q6KAS7 1311 aa21■□□□□ 0.95
Shh-201ENSMUST00000002708 Trim58Q5NCC9 485 aa21■□□□□ 0.95
Shh-201ENSMUST00000002708 Afap1Q80YS6 731 aa21■□□□□ 0.95
Shh-201ENSMUST00000002708 Adgrl1Q80TR1 1466 aa20.99■□□□□ 0.95
Shh-201ENSMUST00000002708 Utp14aQ640M1 767 aaKnown RBP20.99■□□□□ 0.95
Shh-201ENSMUST00000002708 Kif13aQ9EQW7 1749 aa20.99■□□□□ 0.95
Shh-201ENSMUST00000002708 Zmym3Q9JLM4 1370 aa20.99■□□□□ 0.95
Shh-201ENSMUST00000002708 Cluap1Q8R3P7 413 aa20.99■□□□□ 0.95
Shh-201ENSMUST00000002708 Ppp1r18Q8BQ30 594 aa20.98■□□□□ 0.95
Shh-201ENSMUST00000002708 Gsto1O09131 240 aa20.97■□□□□ 0.95
Shh-201ENSMUST00000002708 Atp2b2Q9R0K7 1198 aa20.97■□□□□ 0.95
Shh-201ENSMUST00000002708 Pdlim2Q8R1G6 349 aa20.96■□□□□ 0.95
Shh-201ENSMUST00000002708 Arhgef28P97433 1693 aa20.96■□□□□ 0.95
Shh-201ENSMUST00000002708 Cdk19Q8BWD8 501 aa20.96■□□□□ 0.95
Shh-201ENSMUST00000002708 Dusp27Q148W8 1138 aa20.95■□□□□ 0.94
Shh-201ENSMUST00000002708 Hecw2Q6I6G8 1578 aa20.94■□□□□ 0.94
Shh-201ENSMUST00000002708 Med14A2ABV5 1459 aaKnown RBP20.94■□□□□ 0.94
Shh-201ENSMUST00000002708 NinlQ6ZQ12 1394 aa20.94■□□□□ 0.94
Shh-201ENSMUST00000002708 Abca14E9Q8F8 1683 aa20.94■□□□□ 0.94
Shh-201ENSMUST00000002708 Tnpo1Q8BFY9 898 aaKnown RBP20.93■□□□□ 0.94
Shh-201ENSMUST00000002708 Synj2Q9D2G5 1434 aa20.93■□□□□ 0.94
Shh-201ENSMUST00000002708 Ccar1Q8CH18 1146 aaKnown RBP20.91■□□□□ 0.94
Shh-201ENSMUST00000002708 CltcQ68FD5 1675 aaKnown RBP20.91■□□□□ 0.94
Shh-201ENSMUST00000002708 Ppp2r3aB2RXC8 1150 aa20.91■□□□□ 0.94
Shh-201ENSMUST00000002708 Fam135bQ9DAI6 1403 aa20.9■□□□□ 0.94
Shh-201ENSMUST00000002708 Itsn1Q9Z0R4 1714 aa20.89■□□□□ 0.93
Shh-201ENSMUST00000002708 Naip7Q9JIB3 1402 aa20.88■□□□□ 0.93
Shh-201ENSMUST00000002708 Sptbn5F6UCX4 1208 aa20.88■□□□□ 0.93
Shh-201ENSMUST00000002708 Znf330Q922H9 316 aa20.88■□□□□ 0.93
Shh-201ENSMUST00000002708 Fgd1P52734 960 aa20.87■□□□□ 0.93
Shh-201ENSMUST00000002708 Asxl2Q8BZ32 1370 aa20.87■□□□□ 0.93
Shh-201ENSMUST00000002708 Tmc1Q8R4P5 757 aa20.86■□□□□ 0.93
Shh-201ENSMUST00000002708 Ipo4Q8VI75 1082 aa20.86■□□□□ 0.93
Shh-201ENSMUST00000002708 Mfap1aC0HKD8 439 aaKnown RBP20.85■□□□□ 0.93
Shh-201ENSMUST00000002708 Mfap1bC0HKD9 439 aaKnown RBP20.85■□□□□ 0.93
Shh-201ENSMUST00000002708 Slc12a5Q91V14 1138 aa20.84■□□□□ 0.93
Shh-201ENSMUST00000002708 AU019823E9PUQ3 292 aa20.83■□□□□ 0.93
Shh-201ENSMUST00000002708 NktrP30415 1453 aa20.83■□□□□ 0.92
Shh-201ENSMUST00000002708 Cavin4A2AMM0 362 aa20.82■□□□□ 0.92
Shh-201ENSMUST00000002708 Znf316Q6PGE4 1016 aa20.82■□□□□ 0.92
Shh-201ENSMUST00000002708 PplQ9R269 1755 aa20.82■□□□□ 0.92
Shh-201ENSMUST00000002708 Senp3Q9EP97 568 aaKnown RBP20.81■□□□□ 0.92
Shh-201ENSMUST00000002708 Ercc6l2Q9JIM3 1537 aa20.81■□□□□ 0.92
Shh-201ENSMUST00000002708 FanciQ8K368 1330 aa20.81■□□□□ 0.92
Shh-201ENSMUST00000002708 CastP51125 788 aa20.81■□□□□ 0.92
Shh-201ENSMUST00000002708 Ncbp3Q8BZR9 615 aaKnown RBP20.81■□□□□ 0.92
Shh-201ENSMUST00000002708 PalmQ9Z0P4 383 aa20.81■□□□□ 0.92
Shh-201ENSMUST00000002708 Nutm1Q8BHP2 1126 aa20.8■□□□□ 0.92
Shh-201ENSMUST00000002708 Birc3O08863 600 aa20.79■□□□□ 0.92
Shh-201ENSMUST00000002708 Htatsf1Q8BGC0 757 aa20.79■□□□□ 0.92
Shh-201ENSMUST00000002708 Map3k19E9Q3S4 1311 aa20.79■□□□□ 0.92
Shh-201ENSMUST00000002708 Rbm25B2RY56 838 aaKnown RBP20.78■□□□□ 0.92
Shh-201ENSMUST00000002708 Aplp1Q03157 653 aa20.78■□□□□ 0.92
Shh-201ENSMUST00000002708 Tbc1d32Q3URV1 1296 aa20.78■□□□□ 0.92
Shh-201ENSMUST00000002708 Plekhg1F6S200 1446 aa20.78■□□□□ 0.92
Shh-201ENSMUST00000002708 Rsph4aQ8BYM7 716 aa20.78■□□□□ 0.92
Shh-201ENSMUST00000002708 Ccdc60Q8C4J0 545 aa20.78■□□□□ 0.92
Shh-201ENSMUST00000002708 Rabep1O35551 862 aa20.77■□□□□ 0.92
Shh-201ENSMUST00000002708 Zc3h13E9Q784 1729 aaKnown RBP20.77■□□□□ 0.92
Shh-201ENSMUST00000002708 Ankrd50F7BE84 1390 aa20.77■□□□□ 0.92
Shh-201ENSMUST00000002708 Kcnn1Q9EQR3 537 aa20.77■□□□□ 0.92
Shh-201ENSMUST00000002708 Catsper2A2ARP9 588 aa20.77■□□□□ 0.91
Shh-201ENSMUST00000002708 Nwd1A6H603 1563 aa20.76■□□□□ 0.91
Shh-201ENSMUST00000002708 NpatQ8BMA5 1420 aa20.76■□□□□ 0.91
Shh-201ENSMUST00000002708 Ttc21aQ8C0S4 1314 aa20.76■□□□□ 0.91
Shh-201ENSMUST00000002708 AampJ3QN89 436 aa20.76■□□□□ 0.91
Shh-201ENSMUST00000002708 Antxr1Q9CZ52 562 aa20.75■□□□□ 0.91
Shh-201ENSMUST00000002708 Q4VA45 678 aa20.75■□□□□ 0.91
Shh-201ENSMUST00000002708 Ciz1Q8VEH2 845 aa20.75■□□□□ 0.91
Shh-201ENSMUST00000002708 Kif2cQ922S8 721 aa20.74■□□□□ 0.91
Shh-201ENSMUST00000002708 Trim28Q62318 834 aa20.74■□□□□ 0.91
Shh-201ENSMUST00000002708 Maco1Q7TQE6 664 aaKnown RBP20.73■□□□□ 0.91
Shh-201ENSMUST00000002708 RictorQ6QI06 1708 aa20.73■□□□□ 0.91
Shh-201ENSMUST00000002708 Psme1P97371 249 aa20.73■□□□□ 0.91
Shh-201ENSMUST00000002708 Dnttip2Q8R2M2 758 aaKnown RBP20.73■□□□□ 0.91
Shh-201ENSMUST00000002708 Swt1Q9DBQ9 907 aa20.73■□□□□ 0.91
Shh-201ENSMUST00000002708 Uhrf1bp1B2KF50 1429 aa20.73■□□□□ 0.91
Shh-201ENSMUST00000002708 Txndc2Q6P902 515 aa20.73■□□□□ 0.91
Shh-201ENSMUST00000002708 PaskQ8CEE6 1383 aa20.72■□□□□ 0.91
Shh-201ENSMUST00000002708 Usp32F8VPZ3 1604 aa20.72■□□□□ 0.91
Shh-201ENSMUST00000002708 Nectin2P32507 530 aa20.72■□□□□ 0.91
Shh-201ENSMUST00000002708 Phlpp2Q8BXA7 1320 aa20.7■□□□□ 0.9
Shh-201ENSMUST00000002708 G3bp1P97855 465 aaKnown RBP20.7■□□□□ 0.9
Shh-201ENSMUST00000002708 Fchsd2Q3USJ8 740 aa20.7■□□□□ 0.9
Shh-201ENSMUST00000002708 Cog6Q8R3I3 657 aa20.69■□□□□ 0.9
Shh-201ENSMUST00000002708 Atl3Q91YH5 541 aa20.68■□□□□ 0.9
Shh-201ENSMUST00000002708 Uhrf1bp1lA2RSJ4 1457 aa20.68■□□□□ 0.9
Shh-201ENSMUST00000002708 Tmco5bQ80X59 307 aa20.68■□□□□ 0.9
Shh-201ENSMUST00000002708 Kif18aQ91WD7 886 aa20.68■□□□□ 0.9
Shh-201ENSMUST00000002708 Nsfl1cQ9CZ44 370 aaKnown RBP20.68■□□□□ 0.9
Shh-201ENSMUST00000002708 Znf541Q0GGX2 1363 aa20.67■□□□□ 0.9
Shh-201ENSMUST00000002708 Pik3r4Q8VD65 1358 aa20.67■□□□□ 0.9
Shh-201ENSMUST00000002708 Ccdc171E9Q1U1 1324 aa20.66■□□□□ 0.9
Shh-201ENSMUST00000002708 Dip2aQ8BWT5 1523 aa20.66■□□□□ 0.9
Shh-201ENSMUST00000002708 Ppp1r15aP17564 657 aa20.66■□□□□ 0.9
Shh-201ENSMUST00000002708 Chd4Q6PDQ2 1915 aaKnown RBP20.66■□□□□ 0.9
Shh-201ENSMUST00000002708 Mcm10Q0VBD2 885 aa20.65■□□□□ 0.9
Shh-201ENSMUST00000002708 IghaA0A0A6YXW6 389 aa20.65■□□□□ 0.9
Retrieved 100 of 22,080 RNA–protein pairs in 14.8 ms