RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 NischQ80TM9 1593 aa31.61■■■□□ 2.65
Shh-201ENSMUST00000002708 Gm35339A0A140LHH9 1649 aa31■■■□□ 2.55
Shh-201ENSMUST00000002708 Abcc9P70170 1546 aa30.66■■■□□ 2.5
Shh-201ENSMUST00000002708 Abcc8B2RUS7 1588 aa29.98■■■□□ 2.39
Shh-201ENSMUST00000002708 Rhox8Q6VSS7 320 aa29.42■■■□□ 2.3
Shh-201ENSMUST00000002708 Rtl1Q7M732 1744 aa28.88■■■□□ 2.21
Shh-201ENSMUST00000002708 Ccdc180J3QNE4 1664 aa28.36■■■□□ 2.13
Shh-201ENSMUST00000002708 ScribQ80U72 1612 aa28■■■□□ 2.07
Shh-201ENSMUST00000002708 Zcchc6Q5BLK4 1491 aaKnown RBP27.87■■■□□ 2.05
Shh-201ENSMUST00000002708 Dcaf1Q80TR8 1506 aa27.86■■■□□ 2.05
Shh-201ENSMUST00000002708 Rb1cc1Q9ESK9 1588 aa27.73■■■□□ 2.03
Shh-201ENSMUST00000002708 Kdm5dQ62240 1548 aa27.47■■□□□ 1.99
Shh-201ENSMUST00000002708 Baz1aO88379 1555 aa27.35■■□□□ 1.97
Shh-201ENSMUST00000002708 Ccdc136Q3TVA9 1136 aa27.31■■□□□ 1.96
Shh-201ENSMUST00000002708 Rpgrip1Q9EPQ2 1331 aa27.29■■□□□ 1.96
Shh-201ENSMUST00000002708 Ehmt2Q9Z148 1263 aaKnown RBP27.23■■□□□ 1.95
Shh-201ENSMUST00000002708 NacadQ5SWP3 1504 aa27.18■■□□□ 1.94
Shh-201ENSMUST00000002708 Acin1Q9JIX8 1338 aaKnown RBP27■■□□□ 1.91
Shh-201ENSMUST00000002708 HrcG5E8J6 738 aa26.98■■□□□ 1.91
Shh-201ENSMUST00000002708 Smarca2Q6DIC0 1577 aa26.74■■□□□ 1.87
Shh-201ENSMUST00000002708 Crybg2B7ZCC2 1516 aa26.73■■□□□ 1.87
Shh-201ENSMUST00000002708 Trim41Q5NCC3 630 aa26.61■■□□□ 1.85
Shh-201ENSMUST00000002708 Sycp2Q9CUU3 1500 aa26.6■■□□□ 1.85
Shh-201ENSMUST00000002708 Pcgf6Q99NA9 353 aa26.3■■□□□ 1.8
Shh-201ENSMUST00000002708 Cep164Q5DU05 1446 aa26.23■■□□□ 1.79
Shh-201ENSMUST00000002708 Cecr2E9Q2Z1 1453 aa26.15■■□□□ 1.78
Shh-201ENSMUST00000002708 Cngb1E1AZ71 1325 aa26.11■■□□□ 1.77
Shh-201ENSMUST00000002708 Brd4Q9ESU6 1400 aaKnown RBP26.08■■□□□ 1.77
Shh-201ENSMUST00000002708 BicraF8VPZ9 1578 aa26.06■■□□□ 1.76
Shh-201ENSMUST00000002708 Chic1Q8CBW7 227 aa25.97■■□□□ 1.75
Shh-201ENSMUST00000002708 Rsf1E9PWW9 1441 aaKnown RBP25.97■■□□□ 1.75
Shh-201ENSMUST00000002708 Synj1Q8CHC4 1574 aa25.94■■□□□ 1.74
Shh-201ENSMUST00000002708 Supt5hO55201 1082 aaKnown RBP25.86■■□□□ 1.73
Shh-201ENSMUST00000002708 Golga3P55937 1487 aa25.84■■□□□ 1.73
Shh-201ENSMUST00000002708 Gab3Q8BSM5 595 aa25.83■■□□□ 1.73
Shh-201ENSMUST00000002708 Ccdc88bQ4QRL3 1481 aa25.81■■□□□ 1.72
Shh-201ENSMUST00000002708 CftrP26361 1476 aa25.72■■□□□ 1.71
Shh-201ENSMUST00000002708 Esf1Q3V1V3 845 aaKnown RBP25.7■■□□□ 1.7
Shh-201ENSMUST00000002708 Cttnbp2B9EJA2 1648 aa25.6■■□□□ 1.69
Shh-201ENSMUST00000002708 Top2bQ64511 1612 aa25.57■■□□□ 1.68
Shh-201ENSMUST00000002708 Smarca4Q3TKT4 1613 aaKnown RBP25.49■■□□□ 1.67
Shh-201ENSMUST00000002708 Zeb1Q64318 1117 aa25.46■■□□□ 1.67
Shh-201ENSMUST00000002708 Cc2d2aQ8CFW7 1633 aa25.43■■□□□ 1.66
Shh-201ENSMUST00000002708 Neurod1Q60867 357 aa25.33■■□□□ 1.65
Shh-201ENSMUST00000002708 Mier1Q5UAK0 511 aa25.28■■□□□ 1.64
Shh-201ENSMUST00000002708 Iqgap2Q3UQ44 1575 aa25.16■■□□□ 1.62
Shh-201ENSMUST00000002708 Fmn1Q05860 1466 aa25.14■■□□□ 1.62
Shh-201ENSMUST00000002708 Sall2Q9QX96 1004 aa25.08■■□□□ 1.6
Shh-201ENSMUST00000002708 NefmP08553 848 aa25.07■■□□□ 1.6
Shh-201ENSMUST00000002708 Top2aQ01320 1528 aaKnown RBP25.06■■□□□ 1.6
Shh-201ENSMUST00000002708 Rapgef2Q8CHG7 1496 aa25.06■■□□□ 1.6
Shh-201ENSMUST00000002708 Atad2bE9Q166 1460 aaKnown RBP24.95■■□□□ 1.59
Shh-201ENSMUST00000002708 Myt1lP97500 1187 aa24.89■■□□□ 1.58
Shh-201ENSMUST00000002708 Cep162Q6ZQ06 1403 aa24.87■■□□□ 1.57
Shh-201ENSMUST00000002708 UbtfP25976 765 aaKnown RBP24.85■■□□□ 1.57
Shh-201ENSMUST00000002708 Pds5bQ4VA53 1446 aaKnown RBP24.81■■□□□ 1.56
Shh-201ENSMUST00000002708 Npm2Q80W85 207 aa24.8■■□□□ 1.56
Shh-201ENSMUST00000002708 Aebp2Q9Z248 504 aaKnown RBP24.72■■□□□ 1.55
Shh-201ENSMUST00000002708 TnnQ80Z71 1560 aa24.71■■□□□ 1.55
Shh-201ENSMUST00000002708 Wdr66E9Q743 1299 aa24.68■■□□□ 1.54
Shh-201ENSMUST00000002708 Ppargc1bQ8VHJ7 1014 aa24.68■■□□□ 1.54
Shh-201ENSMUST00000002708 Frmpd1A2AKB4 1549 aa24.66■■□□□ 1.54
Shh-201ENSMUST00000002708 Eif4g1Q6NZJ6 1600 aaKnown RBP24.64■■□□□ 1.54
Shh-201ENSMUST00000002708 Wdr62Q3U3T8 1523 aa24.62■■□□□ 1.53
Shh-201ENSMUST00000002708 Clip1Q922J3 1391 aa24.54■■□□□ 1.52
Shh-201ENSMUST00000002708 Csrnp3P59055 597 aa24.53■■□□□ 1.52
Shh-201ENSMUST00000002708 Las1lA2BE28 776 aaKnown RBP24.51■■□□□ 1.51
Shh-201ENSMUST00000002708 Il27Q8K3I6 234 aa24.5■■□□□ 1.51
Shh-201ENSMUST00000002708 Unc13aQ4KUS2 1712 aa24.5■■□□□ 1.51
Shh-201ENSMUST00000002708 Plekhg3Q4VAC9 1341 aa24.49■■□□□ 1.51
Shh-201ENSMUST00000002708 Lamc3Q9R0B6 1581 aa24.49■■□□□ 1.51
Shh-201ENSMUST00000002708 PtprkP35822 1457 aa24.49■■□□□ 1.51
Shh-201ENSMUST00000002708 Anks4bQ8K3X6 423 aa24.48■■□□□ 1.51
Shh-201ENSMUST00000002708 Arhgap35Q91YM2 1499 aa24.45■■□□□ 1.51
Shh-201ENSMUST00000002708 1700123L14RikQ3V2K7 440 aa24.45■■□□□ 1.5
Shh-201ENSMUST00000002708 Kif15Q6P9L6 1387 aa24.44■■□□□ 1.5
Shh-201ENSMUST00000002708 Ercc6F8VPZ5 1481 aa24.42■■□□□ 1.5
Shh-201ENSMUST00000002708 NrkQ9R0G8 1455 aa24.38■■□□□ 1.49
Shh-201ENSMUST00000002708 Camsap1A2AHC3 1581 aa24.34■■□□□ 1.49
Shh-201ENSMUST00000002708 ClspnQ80YR7 1315 aa24.32■■□□□ 1.48
Shh-201ENSMUST00000002708 Nop58Q6DFW4 536 aaKnown RBP24.3■■□□□ 1.48
Shh-201ENSMUST00000002708 Shroom4Q1W617 1475 aa24.29■■□□□ 1.48
Shh-201ENSMUST00000002708 Cdk11bP24788 784 aaKnown RBP24.29■■□□□ 1.48
Shh-201ENSMUST00000002708 Ap3b1Q9Z1T1 1105 aa24.26■■□□□ 1.47
Shh-201ENSMUST00000002708 Arap1Q4LDD4 1452 aa24.25■■□□□ 1.47
Shh-201ENSMUST00000002708 Eea1Q8BL66 1411 aa24.25■■□□□ 1.47
Shh-201ENSMUST00000002708 Ncapd3Q6ZQK0 1506 aa24.23■■□□□ 1.47
Shh-201ENSMUST00000002708 TonslQ6NZL6 1363 aa24.22■■□□□ 1.47
Shh-201ENSMUST00000002708 Ccdc18Q640L5 1455 aa24.18■■□□□ 1.46
Shh-201ENSMUST00000002708 Setd5Q5XJV7 1441 aa24.17■■□□□ 1.46
Shh-201ENSMUST00000002708 Grin2bQ01097 1482 aa24.17■■□□□ 1.46
Shh-201ENSMUST00000002708 Map3k1P53349 1493 aa24.15■■□□□ 1.46
Shh-201ENSMUST00000002708 Arhgef5E9Q7D5 1581 aa24.14■■□□□ 1.46
Shh-201ENSMUST00000002708 Gm38655A0A286YDK6 273 aa24.12■■□□□ 1.45
Shh-201ENSMUST00000002708 Mroh2bQ7M6Y6 1581 aa24.07■■□□□ 1.44
Shh-201ENSMUST00000002708 Baz1bQ9Z277 1479 aa24.06■■□□□ 1.44
Shh-201ENSMUST00000002708 Phldb1Q6PDH0 1371 aaKnown RBP24.03■■□□□ 1.44
Shh-201ENSMUST00000002708 Cux2P70298 1426 aa24.01■■□□□ 1.43
Shh-201ENSMUST00000002708 Eid3Q3V124 375 aa24■■□□□ 1.43
Shh-201ENSMUST00000002708 Tiam1Q60610 1591 aa23.99■■□□□ 1.43
Retrieved 100 of 22,080 RNA–protein pairs in 129.8 ms