RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RAT1	YOR048C	WAR1	Q03631	944 aa		6.15	□□□□□ -1.43
RAT1	YOR048C	APL4	Q12028	832 aa		6.15	□□□□□ -1.43
RAT1	YOR048C	CDC15	P27636	974 aa		6.14	□□□□□ -1.43
RAT1	YOR048C	MCM4	P30665	933 aa	Known RBP	6.14	□□□□□ -1.43
RAT1	YOR048C	MSH4	P40965	878 aa	Predicted RBP	6.14	□□□□□ -1.43
RAT1	YOR048C	PEX14	P53112	341 aa		6.14	□□□□□ -1.43
RAT1	YOR048C	BRE1	Q07457	700 aa	Known RBP	6.14	□□□□□ -1.43
RAT1	YOR048C	HSP82	P02829	709 aa	Known RBP	6.14	□□□□□ -1.43
RAT1	YOR048C	GDT1	P38301	280 aa	Predicted RBP	6.14	□□□□□ -1.43
RAT1	YOR048C	TCB1	Q12466	1186 aa		6.14	□□□□□ -1.43
RAT1	YOR048C	RPT3	P33298	428 aa	Known RBP	6.13	□□□□□ -1.43
RAT1	YOR048C	EPS1	P40557	701 aa		6.13	□□□□□ -1.43
RAT1	YOR048C	HDA1	P53973	706 aa		6.13	□□□□□ -1.43
RAT1	YOR048C	MEC3	Q02574	474 aa		6.13	□□□□□ -1.43
RAT1	YOR048C	YPR204W	Q08995	1032 aa		6.13	□□□□□ -1.43
RAT1	YOR048C	TMA16	Q08687	178 aa		6.13	□□□□□ -1.43
RAT1	YOR048C	PSH1	Q12161	406 aa		6.12	□□□□□ -1.43
RAT1	YOR048C	SEC18	P18759	758 aa	Known RBP	6.12	□□□□□ -1.43
RAT1	YOR048C	PSY4	P38193	441 aa		6.12	□□□□□ -1.43
RAT1	YOR048C	RRB1	Q04225	511 aa	Known RBP	6.12	□□□□□ -1.43
RAT1	YOR048C	MLC1	P53141	149 aa		6.12	□□□□□ -1.43
RAT1	YOR048C	YBP2	P53169	641 aa		6.12	□□□□□ -1.43
RAT1	YOR048C	RGP1	P16664	663 aa		6.11	□□□□□ -1.43
RAT1	YOR048C	LTV1	P34078	463 aa		6.11	□□□□□ -1.43
RAT1	YOR048C	FKS3	Q04952	1785 aa		6.11	□□□□□ -1.43
RAT1	YOR048C	PET123	P17558	318 aa		6.11	□□□□□ -1.43
RAT1	YOR048C	VPS1	P21576	704 aa	Known RBP	6.11	□□□□□ -1.43
RAT1	YOR048C	TLG2	Q08144	397 aa		6.11	□□□□□ -1.43
RAT1	YOR048C	ARG8	P18544	423 aa		6.1	□□□□□ -1.43
RAT1	YOR048C	BUD6	P41697	788 aa		6.1	□□□□□ -1.43
RAT1	YOR048C	PTK2	P47116	818 aa	Known RBP	6.1	□□□□□ -1.43
RAT1	YOR048C	AFT2	Q08957	416 aa		6.1	□□□□□ -1.43
RAT1	YOR048C	ELG1	Q12050	791 aa		6.1	□□□□□ -1.43
RAT1	YOR048C	YGR130C	P53278	816 aa		6.1	□□□□□ -1.43
RAT1	YOR048C	APP1	P53933	587 aa		6.1	□□□□□ -1.43
RAT1	YOR048C	GSY2	P27472	705 aa		6.09	□□□□□ -1.43
RAT1	YOR048C	SER1	P33330	395 aa	Known RBP	6.09	□□□□□ -1.43
RAT1	YOR048C	RRM3	P38766	723 aa		6.09	□□□□□ -1.43
RAT1	YOR048C	HYR1	P40581	163 aa	Known RBP	6.09	□□□□□ -1.43
RAT1	YOR048C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	6.09	□□□□□ -1.43	not detected
RAT1	YOR048C	CHO2	P05374	869 aa	Known RBP	6.09	□□□□□ -1.43
RAT1	YOR048C	ATG13	Q06628	738 aa		6.09	□□□□□ -1.43
RAT1	YOR048C	YKL068W-A	Q3E826	78 aa		6.09	□□□□□ -1.43
RAT1	YOR048C	STR2	P47164	639 aa		6.09	□□□□□ -1.44
RAT1	YOR048C	DDP1	Q99321	188 aa	Known RBP	6.09	□□□□□ -1.44
RAT1	YOR048C	FBP26	P32604	452 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	TTI1	P36097	1038 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	STU2	P46675	888 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	GYL1	Q04322	720 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	ELM1	P32801	640 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	YKL133C	P36066	463 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	SEC9	P40357	651 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	YIR042C	P40586	236 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	CTF4	Q01454	927 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	YOL098C	Q12496	1037 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	LAM4	P38800	1345 aa		6.08	□□□□□ -1.44
RAT1	YOR048C	PDC1	P06169	563 aa	Known RBP	6.07	□□□□□ -1.44
RAT1	YOR048C	SAC6	P32599	642 aa	Known RBP	6.07	□□□□□ -1.44
RAT1	YOR048C	SIS2	P36024	562 aa		6.07	□□□□□ -1.44
RAT1	YOR048C	NOP53	Q12080	455 aa	Known RBP	6.07	□□□□□ -1.44
RAT1	YOR048C	SEC65	P29478	273 aa		6.07	□□□□□ -1.44
RAT1	YOR048C	RMT2	Q03305	412 aa		6.07	□□□□□ -1.44
RAT1	YOR048C	CDC6	P09119	513 aa		6.07	□□□□□ -1.44
RAT1	YOR048C	MSH3	P25336	1018 aa		6.07	□□□□□ -1.44
RAT1	YOR048C	MPE1	P35728	441 aa	Known RBP	6.07	□□□□□ -1.44
RAT1	YOR048C	RPN1	P38764	993 aa	Known RBP	6.07	□□□□□ -1.44
RAT1	YOR048C	YKE2	P52553	114 aa		6.07	□□□□□ -1.44
RAT1	YOR048C	YPL150W	Q12152	901 aa		6.07	□□□□□ -1.44
RAT1	YOR048C	GYP5	Q12344	894 aa		6.07	□□□□□ -1.44
RAT1	YOR048C	MGA2	P40578	1113 aa		6.06	□□□□□ -1.44
RAT1	YOR048C	LSC2	P53312	427 aa		6.06	□□□□□ -1.44
RAT1	YOR048C	YPL216W	Q08964	1102 aa		6.06	□□□□□ -1.44
RAT1	YOR048C	RRI2	Q12348	645 aa		6.06	□□□□□ -1.44
RAT1	YOR048C	ENT1	Q12518	454 aa		6.06	□□□□□ -1.44
RAT1	YOR048C	REB1	P21538	810 aa		6.06	□□□□□ -1.44
RAT1	YOR048C	PEP3	P27801	918 aa		6.06	□□□□□ -1.44
RAT1	YOR048C	AKR1	P39010	764 aa		6.06	□□□□□ -1.44
RAT1	YOR048C	PSR2	Q07949	397 aa		6.06	□□□□□ -1.44
RAT1	YOR048C	RPS6A	P0CX37	236 aa	Known RBP	6.05	□□□□□ -1.44
RAT1	YOR048C	RPS6B	P0CX38	236 aa	Predicted RBP	6.05	□□□□□ -1.44
RAT1	YOR048C	SSF1	P38789	453 aa	Predicted RBP	6.05	□□□□□ -1.44
RAT1	YOR048C	YGL140C	P53120	1219 aa		6.05	□□□□□ -1.44
RAT1	YOR048C	ALD3	P54114	506 aa		6.05	□□□□□ -1.44
RAT1	YOR048C	SNU66	Q12420	587 aa	Predicted RBP	6.05	□□□□□ -1.44
RAT1	YOR048C	SHM1	P37292	490 aa	Predicted RBP	6.05	□□□□□ -1.44
RAT1	YOR048C	SPT8	P38915	602 aa		6.05	□□□□□ -1.44
RAT1	YOR048C	EIS1	Q05050	843 aa	Known RBP	6.05	□□□□□ -1.44
RAT1	YOR048C	YLR001C	Q07895	862 aa		6.05	□□□□□ -1.44
RAT1	YOR048C	COB	P00163	385 aa		6.04	□□□□□ -1.44
RAT1	YOR048C	HXK1	P04806	485 aa	Known RBP	6.04	□□□□□ -1.44
RAT1	YOR048C	MATALPHA2	P0CY08	210 aa		6.04	□□□□□ -1.44
RAT1	YOR048C	HMLALPHA2	P0CY09	210 aa		6.04	□□□□□ -1.44
RAT1	YOR048C	CAF20	P12962	161 aa	Known RBP	6.04	□□□□□ -1.44
RAT1	YOR048C	CLB1	P24868	471 aa		6.04	□□□□□ -1.44
RAT1	YOR048C	YOL075C	Q08234	1294 aa		6.04	□□□□□ -1.44
RAT1	YOR048C	NOP14	Q99207	810 aa	Known RBP	6.04	□□□□□ -1.44
RAT1	YOR048C	REI1	P38344	393 aa	Predicted RBP	6.04	□□□□□ -1.44
RAT1	YOR048C	IES2	P40154	320 aa		6.04	□□□□□ -1.44
RAT1	YOR048C	PKH3	Q03306	898 aa	Predicted RBP	6.04	□□□□□ -1.44
RAT1	YOR048C	YLR407W	Q06070	228 aa		6.04	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms