RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CDCA7LQ96GN5 454 aa6.94□□□□□ -1.3
SYNE1-220ENST00000471834 CARD11Q9BXL7 1154 aa6.94□□□□□ -1.3
SYNE1-220ENST00000471834 UGGT1Q9NYU2 1555 aa6.94□□□□□ -1.3
SYNE1-220ENST00000471834 MAP3K4Q9Y6R4 1608 aa6.94□□□□□ -1.3
SYNE1-220ENST00000471834 SENP3Q9H4L4 574 aaPredicted RBP6.94□□□□□ -1.3
SYNE1-220ENST00000471834 KIF16BQ96L93 1317 aa6.94□□□□□ -1.3
SYNE1-220ENST00000471834 ABCC11Q96J66 1382 aa6.93□□□□□ -1.3
SYNE1-220ENST00000471834 E9PSI1 815 aa6.93□□□□□ -1.3
SYNE1-220ENST00000471834 KCNA4P22459 653 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 WDR63Q8IWG1 891 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 TMC1Q8TDI8 760 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 KIF24Q5T7B8 1368 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 GOLGA2Q08379 1002 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 ABCA9Q8IUA7 1624 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 ERCC6L2Q5T890 1561 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 CDCA8Q53HL2 280 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 MLH3Q9UHC1 1453 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 IRX6P78412 446 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-220ENST00000471834 C20orf194Q5TEA3 1177 aa6.92□□□□□ -1.3
SYNE1-220ENST00000471834 FRAT1Q92837 279 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-220ENST00000471834 XRCC6P12956 609 aaKnown RBP eCLIP6.91□□□□□ -1.3
SYNE1-220ENST00000471834 ADAMTS8Q9UP79 889 aa6.91□□□□□ -1.3
SYNE1-220ENST00000471834 NEXMIFQ5QGS0 1516 aa6.91□□□□□ -1.3
SYNE1-220ENST00000471834 RRP9O43818 475 aaKnown RBP6.91□□□□□ -1.3
SYNE1-220ENST00000471834 SPINK5Q9NQ38 1064 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-220ENST00000471834 NBPF1Q3BBV0 1214 aa6.91□□□□□ -1.3
SYNE1-220ENST00000471834 RRAGDQ9NQL2 400 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-220ENST00000471834 ZCCHC11Q5TAX3 1644 aaKnown RBP6.91□□□□□ -1.3
SYNE1-220ENST00000471834 CHMP7Q8WUX9 453 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-220ENST00000471834 DIP2AQ14689 1571 aa6.9□□□□□ -1.3
SYNE1-220ENST00000471834 EPB41L2O43491 1005 aaKnown RBP6.9□□□□□ -1.3
SYNE1-220ENST00000471834 BRPF3Q9ULD4 1205 aa6.9□□□□□ -1.3
SYNE1-220ENST00000471834 ZNF777Q9ULD5 760 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-220ENST00000471834 CRBNQ96SW2 442 aa6.9□□□□□ -1.31
SYNE1-220ENST00000471834 CDK12Q9NYV4 1490 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-220ENST00000471834 FRAT2O75474 233 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-220ENST00000471834 JPH4Q96JJ6 628 aa6.9□□□□□ -1.31
SYNE1-220ENST00000471834 PTCH1Q13635 1447 aa6.9□□□□□ -1.31
SYNE1-220ENST00000471834 CD163L1Q9NR16 1453 aa6.89□□□□□ -1.31
SYNE1-220ENST00000471834 CLUAP1Q96AJ1 413 aa6.89□□□□□ -1.31
SYNE1-220ENST00000471834 KIF2CQ99661 725 aa6.89□□□□□ -1.31
SYNE1-220ENST00000471834 CHIC2Q9UKJ5 165 aa6.89□□□□□ -1.31
SYNE1-220ENST00000471834 ARHGAP45Q92619 1136 aa6.88□□□□□ -1.31
SYNE1-220ENST00000471834 CEP152O94986 1710 aa6.88□□□□□ -1.31
SYNE1-220ENST00000471834 FRMPD1Q5SYB0 1578 aa6.88□□□□□ -1.31
SYNE1-220ENST00000471834 NEFMP07197 916 aa6.88□□□□□ -1.31
SYNE1-220ENST00000471834 MCM4P33991 863 aa6.88□□□□□ -1.31
SYNE1-220ENST00000471834 CD109Q6YHK3 1445 aa6.88□□□□□ -1.31
SYNE1-220ENST00000471834 TMF1P82094 1093 aa6.88□□□□□ -1.31
SYNE1-220ENST00000471834 RPGRIP1LQ68CZ1 1315 aa6.88□□□□□ -1.31
SYNE1-220ENST00000471834 NBR1Q14596 966 aa6.87□□□□□ -1.31
SYNE1-220ENST00000471834 DMRT2Q9Y5R5 561 aa6.87□□□□□ -1.31
SYNE1-220ENST00000471834 MRE11P49959 708 aa6.87□□□□□ -1.31
SYNE1-220ENST00000471834 RARSP54136 660 aaKnown RBP6.87□□□□□ -1.31
SYNE1-220ENST00000471834 L1TD1Q5T7N2 865 aaKnown RBP6.87□□□□□ -1.31
SYNE1-220ENST00000471834 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.87□□□□□ -1.31
SYNE1-220ENST00000471834 TBC1D2Q9BYX2 928 aa6.87□□□□□ -1.31
SYNE1-220ENST00000471834 ZNF500O60304 480 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-220ENST00000471834 CARD14Q9BXL6 1004 aa6.87□□□□□ -1.31
SYNE1-220ENST00000471834 CLTCQ00610 1675 aaKnown RBP6.87□□□□□ -1.31
SYNE1-220ENST00000471834 CPSF1Q10570 1443 aaKnown RBP6.87□□□□□ -1.31
SYNE1-220ENST00000471834 PLEKHD1A6NEE1 506 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 ARXQ96QS3 562 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 ZC3H13Q5T200 1668 aaKnown RBP6.86□□□□□ -1.31
SYNE1-220ENST00000471834 TSPY4P0CV99 314 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 TSPY10P0CW01 314 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 DLC1Q96QB1 1528 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 IGHDP01880 384 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-220ENST00000471834 ZNF445P59923 1031 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 PANK3Q9H999 370 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 POGKQ9P215 609 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 HECW2Q9P2P5 1572 aa6.86□□□□□ -1.31
SYNE1-220ENST00000471834 MCM5P33992 734 aa6.85□□□□□ -1.31
SYNE1-220ENST00000471834 GTF2F1P35269 517 aaKnown RBP eCLIP6.85□□□□□ -1.31
SYNE1-220ENST00000471834 WWC1Q8IX03 1113 aa6.85□□□□□ -1.31
SYNE1-220ENST00000471834 TULP4Q9NRJ4 1543 aa6.85□□□□□ -1.31
SYNE1-220ENST00000471834 TECPR2O15040 1411 aa6.85□□□□□ -1.31
SYNE1-220ENST00000471834 PRDM4Q9UKN5 801 aa6.85□□□□□ -1.31
SYNE1-220ENST00000471834 ZNF853P0CG23 659 aa6.85□□□□□ -1.31
SYNE1-220ENST00000471834 BMP2KLQ5H9B9 411 aa6.84□□□□□ -1.31
SYNE1-220ENST00000471834 DNAJC5BQ9UF47 199 aa6.84□□□□□ -1.31
SYNE1-220ENST00000471834 ANKRD36BQ8N2N9 1353 aa6.84□□□□□ -1.31
SYNE1-220ENST00000471834 PCDHB15Q9Y5E8 787 aa6.84□□□□□ -1.31
SYNE1-220ENST00000471834 OFD1O75665 1012 aa6.84□□□□□ -1.31
SYNE1-220ENST00000471834 HSP90AB1P08238 724 aaKnown RBP6.84□□□□□ -1.31
SYNE1-220ENST00000471834 CALD1Q05682 793 aaKnown RBP6.84□□□□□ -1.31
SYNE1-220ENST00000471834 RAB3GAP1Q15042 981 aa6.84□□□□□ -1.32
SYNE1-220ENST00000471834 SSH2Q76I76 1423 aa6.84□□□□□ -1.32
SYNE1-220ENST00000471834 CHMP5Q9NZZ3 219 aa6.83□□□□□ -1.32
SYNE1-220ENST00000471834 ATP7AQ04656 1500 aa6.83□□□□□ -1.32
SYNE1-220ENST00000471834 FAM135BQ49AJ0 1406 aa6.83□□□□□ -1.32
SYNE1-220ENST00000471834 C14orf93Q9H972 538 aaKnown RBP6.83□□□□□ -1.32
SYNE1-220ENST00000471834 ERBB4Q15303 1308 aa6.83□□□□□ -1.32
SYNE1-220ENST00000471834 LMTK3Q96Q04 1460 aa6.83□□□□□ -1.32
SYNE1-220ENST00000471834 SEC24BO95487 1268 aa6.83□□□□□ -1.32
SYNE1-220ENST00000471834 ZBTB40Q9NUA8 1239 aa6.83□□□□□ -1.32
SYNE1-220ENST00000471834 KDM5AP29375 1690 aaKnown RBP6.83□□□□□ -1.32
SYNE1-220ENST00000471834 RGS12O14924 1447 aa6.83□□□□□ -1.32
SYNE1-220ENST00000471834 ATP10DQ9P241 1426 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms