RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C YOR343CQ12484 108 aa-1.24□□□□□ -2.61
PCF11YDR228C APC1P53886 1748 aa-1.24□□□□□ -2.61
PCF11YDR228C YER039C-AP0CD97 72 aa-1.24□□□□□ -2.61
PCF11YDR228C RPS27AP35997 82 aaKnown RBP-1.24□□□□□ -2.61
PCF11YDR228C GEA1P47102 1408 aaPredicted RBP-1.25□□□□□ -2.61
PCF11YDR228C YLR146W-AQ2V2P1 62 aa-1.25□□□□□ -2.61
PCF11YDR228C YDR524C-BQ3E6R4 66 aa-1.25□□□□□ -2.61
PCF11YDR228C IRC20Q06554 1556 aa-1.26□□□□□ -2.61
PCF11YDR228C SUS1Q6WNK7 96 aa-1.26□□□□□ -2.61
PCF11YDR228C YDR042CQ03205 200 aa-1.26□□□□□ -2.61
PCF11YDR228C YDR119W-AQ2V2P9 66 aa-1.26□□□□□ -2.61
PCF11YDR228C YGL258W-AQ3E740 77 aa-1.26□□□□□ -2.61
PCF11YDR228C NOP10Q6Q547 58 aaPredicted RBP-1.26□□□□□ -2.61
PCF11YDR228C PDR11P40550 1411 aa-1.27□□□□□ -2.61
PCF11YDR228C KOG1P38873 1557 aa-1.27□□□□□ -2.61
PCF11YDR228C YPL225WQ08971 146 aaKnown RBP-1.27□□□□□ -2.61
PCF11YDR228C YLL006W-AQ3E814 58 aa-1.27□□□□□ -2.61
PCF11YDR228C KSH1Q8TGJ3 72 aa-1.27□□□□□ -2.61
PCF11YDR228C TRA1P38811 3744 aa-1.28□□□□□ -2.61
PCF11YDR228C YOR304C-AO14468 76 aa-1.29□□□□□ -2.62
PCF11YDR228C RRT15Q3E811 62 aa-1.29□□□□□ -2.62
PCF11YDR228C YOR394C-AQ8TGJ0 55 aa-1.29□□□□□ -2.62
PCF11YDR228C RPA190P10964 1664 aaKnown RBP-1.29□□□□□ -2.62
PCF11YDR228C UTP10P42945 1769 aaKnown RBP-1.29□□□□□ -2.62
PCF11YDR228C MSL1P40567 111 aaPredicted RBP-1.29□□□□□ -2.62
PCF11YDR228C SCP1Q08873 200 aa-1.29□□□□□ -2.62
PCF11YDR228C REV3P14284 1504 aa-1.3□□□□□ -2.62
PCF11YDR228C POL1P13382 1468 aa-1.3□□□□□ -2.62
PCF11YDR228C GEA2P39993 1459 aaKnown RBP-1.3□□□□□ -2.62
PCF11YDR228C TY3B-GQ99315 1547 aa-1.31□□□□□ -2.62
PCF11YDR228C YOR105WQ08504 108 aa-1.31□□□□□ -2.62
PCF11YDR228C VPS13Q07878 3144 aa-1.32□□□□□ -2.62
PCF11YDR228C YIL156W-BQ2V2P4 73 aa-1.32□□□□□ -2.62
PCF11YDR228C YOR072W-BQ3E832 53 aa-1.32□□□□□ -2.62
PCF11YDR228C RPS12P48589 143 aaKnown RBP-1.33□□□□□ -2.62
PCF11YDR228C YBR200W-AQ3E755 54 aa-1.33□□□□□ -2.62
PCF11YDR228C YOR011W-AQ3E807 68 aa-1.33□□□□□ -2.62
PCF11YDR228C GDB1Q06625 1536 aa-1.34□□□□□ -2.62
PCF11YDR228C TSC11P40061 1430 aa-1.34□□□□□ -2.62
PCF11YDR228C SWR1Q05471 1514 aa-1.36□□□□□ -2.63
PCF11YDR228C ATP17Q06405 101 aa-1.36□□□□□ -2.63
PCF11YDR228C VPS15P22219 1454 aa-1.36□□□□□ -2.63
PCF11YDR228C YBL039W-BP0C268 59 aa-1.37□□□□□ -2.63
PCF11YDR228C YOR314WQ12506 109 aa-1.37□□□□□ -2.63
PCF11YDR228C YKL065W-AQ2V2P2 73 aa-1.38□□□□□ -2.63
PCF11YDR228C YDL022C-AP0C5L6 82 aa-1.39□□□□□ -2.63
PCF11YDR228C YGR146C-AQ8TGT9 53 aa-1.39□□□□□ -2.63
PCF11YDR228C TOM1Q03280 3268 aa-1.4□□□□□ -2.63
PCF11YDR228C YER137CP40083 148 aaKnown RBP-1.4□□□□□ -2.63
PCF11YDR228C YMR082CQ04276 118 aa-1.41□□□□□ -2.63
PCF11YDR228C YCL001W-BQ96VH2 84 aa-1.41□□□□□ -2.63
PCF11YDR228C RPS27BP38711 82 aa-1.42□□□□□ -2.64
PCF11YDR228C HAP1P0CE41 1502 aa-1.43□□□□□ -2.64
PCF11YDR228C SIN3P22579 1536 aa-1.43□□□□□ -2.64
PCF11YDR228C PDR10P51533 1564 aa-1.44□□□□□ -2.64
PCF11YDR228C YBR230W-AQ3E762 66 aa-1.45□□□□□ -2.64
PCF11YDR228C YOR192C-CQ3E736 78 aa-1.46□□□□□ -2.64
PCF11YDR228C Q0017Q9ZZX8 53 aa-1.46□□□□□ -2.64
PCF11YDR228C FIG2P25653 1609 aa-1.46□□□□□ -2.64
PCF11YDR228C QCR9P22289 66 aa-1.48□□□□□ -2.65
PCF11YDR228C MDS3P53094 1487 aa-1.48□□□□□ -2.65
PCF11YDR228C HUB1Q6Q546 73 aa-1.48□□□□□ -2.65
PCF11YDR228C FKS3Q04952 1785 aa-1.48□□□□□ -2.65
PCF11YDR228C YGL194C-AQ2V2P6 80 aa-1.49□□□□□ -2.65
PCF11YDR228C YMR175W-AQ3E766 64 aa-1.49□□□□□ -2.65
PCF11YDR228C YOR032W-AQ8TGS1 66 aa-1.49□□□□□ -2.65
PCF11YDR228C SSS1P35179 80 aa-1.5□□□□□ -2.65
PCF11YDR228C PAU7P39545 55 aa-1.5□□□□□ -2.65
PCF11YDR228C YPR145C-AQ2V2P0 78 aa-1.5□□□□□ -2.65
PCF11YDR228C YSP2Q06681 1438 aa-1.5□□□□□ -2.65
PCF11YDR228C MMS22Q06164 1454 aa-1.52□□□□□ -2.65
PCF11YDR228C ZEO1Q08245 113 aa-1.52□□□□□ -2.65
PCF11YDR228C YGR121W-AQ3E816 71 aa-1.52□□□□□ -2.65
PCF11YDR228C SWM2P40342 146 aa-1.53□□□□□ -2.65
PCF11YDR228C YGR035W-AQ45U48 73 aa-1.53□□□□□ -2.65
PCF11YDR228C YMR105W-AQ8TGS8 64 aa-1.54□□□□□ -2.66
PCF11YDR228C DNF1P32660 1571 aa-1.54□□□□□ -2.66
PCF11YDR228C THO2P53552 1597 aaKnown RBP-1.55□□□□□ -2.66
PCF11YDR228C YML054C-AQ3E809 52 aa-1.56□□□□□ -2.66
PCF11YDR228C SPI1P40092 148 aa-1.56□□□□□ -2.66
PCF11YDR228C MLP1Q02455 1875 aaKnown RBP-1.58□□□□□ -2.66
PCF11YDR228C YCR075W-AQ3E830 75 aa-1.58□□□□□ -2.66
PCF11YDR228C LTE1P07866 1435 aa-1.59□□□□□ -2.66
PCF11YDR228C CWP2P43497 92 aa-1.59□□□□□ -2.66
PCF11YDR228C TIM12P32830 109 aa-1.6□□□□□ -2.67
PCF11YDR228C PDR12Q02785 1511 aa-1.61□□□□□ -2.67
PCF11YDR228C YLR157W-DP0CE99 70 aa-1.63□□□□□ -2.67
PCF11YDR228C SNQ2P32568 1501 aaKnown RBP-1.65□□□□□ -2.67
PCF11YDR228C ARO1P08566 1588 aaKnown RBP-1.66□□□□□ -2.67
PCF11YDR228C RPS30AP0CX33 63 aaKnown RBP-1.66□□□□□ -2.68
PCF11YDR228C RPS30BP0CX34 63 aaKnown RBP-1.66□□□□□ -2.68
PCF11YDR228C ERI1P62651 68 aaKnown RBP-1.67□□□□□ -2.68
PCF11YDR228C PDR15Q04182 1529 aaKnown RBP-1.68□□□□□ -2.68
PCF11YDR228C RRP5Q05022 1729 aaKnown RBP-1.68□□□□□ -2.68
PCF11YDR228C YDR034C-AP0C289 58 aa-1.68□□□□□ -2.68
PCF11YDR228C ESP1Q03018 1630 aa-1.68□□□□□ -2.68
PCF11YDR228C TY1B-DR4Q07793 1604 aa-1.68□□□□□ -2.68
PCF11YDR228C IQG1Q12280 1495 aa-1.68□□□□□ -2.68
PCF11YDR228C RPL29P05747 59 aaPredicted RBP-1.69□□□□□ -2.68
PCF11YDR228C DNF2Q12675 1612 aa-1.69□□□□□ -2.68
Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms