RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C UTP10P42945 1769 aaKnown RBP0.78□□□□□ -2.28
UBP11YKR098C ULS1Q08562 1619 aa0.78□□□□□ -2.28
UBP11YKR098C POL1P13382 1468 aa0.78□□□□□ -2.28
UBP11YKR098C YMR082CQ04276 118 aa0.78□□□□□ -2.28
UBP11YKR098C YLR307C-AQ3E825 87 aa0.78□□□□□ -2.28
UBP11YKR098C KSH1Q8TGJ3 72 aa0.78□□□□□ -2.28
UBP11YKR098C SWR1Q05471 1514 aa0.78□□□□□ -2.28
UBP11YKR098C PEP1P32319 1579 aa0.78□□□□□ -2.28
UBP11YKR098C RPO21P04050 1733 aaKnown RBP0.78□□□□□ -2.29
UBP11YKR098C ATX1P38636 73 aa0.77□□□□□ -2.29
UBP11YKR098C RRT15Q3E811 62 aa0.77□□□□□ -2.29
UBP11YKR098C YNR034W-AQ3E841 98 aa0.77□□□□□ -2.29
UBP11YKR098C MYO1P08964 1928 aa0.77□□□□□ -2.29
UBP11YKR098C PRP8P33334 2413 aaKnown RBP0.77□□□□□ -2.29
UBP11YKR098C TY4B-HP0C2J7 1802 aa0.77□□□□□ -2.29
UBP11YKR098C SNQ2P32568 1501 aaKnown RBP0.77□□□□□ -2.29
UBP11YKR098C IRC20Q06554 1556 aa0.77□□□□□ -2.29
UBP11YKR098C YCR085WP25650 117 aa0.77□□□□□ -2.29
UBP11YKR098C YHR138CP38841 114 aaPredicted RBP0.77□□□□□ -2.29
UBP11YKR098C RSM19P53733 91 aaPredicted RBP0.77□□□□□ -2.29
UBP11YKR098C SPO14P36126 1683 aa0.77□□□□□ -2.29
UBP11YKR098C YLR419WQ06698 1435 aaKnown RBP0.77□□□□□ -2.29
UBP11YKR098C STU1P38198 1513 aa0.76□□□□□ -2.29
UBP11YKR098C BPT1P14772 1559 aa0.76□□□□□ -2.29
UBP11YKR098C THO2P53552 1597 aaKnown RBP0.76□□□□□ -2.29
UBP11YKR098C YLR157W-EP0CF00 54 aa0.76□□□□□ -2.29
UBP11YKR098C UBC4P15731 148 aa0.76□□□□□ -2.29
UBP11YKR098C SWM2P40342 146 aa0.76□□□□□ -2.29
UBP11YKR098C PAU23Q07987 124 aa0.76□□□□□ -2.29
UBP11YKR098C POC4Q12245 148 aaPredicted RBP0.76□□□□□ -2.29
UBP11YKR098C PAU17Q12370 124 aa0.76□□□□□ -2.29
UBP11YKR098C SUS1Q6WNK7 96 aa0.76□□□□□ -2.29
UBP11YKR098C SPT6P23615 1451 aaKnown RBP0.76□□□□□ -2.29
UBP11YKR098C BLM10P43583 2143 aa0.76□□□□□ -2.29
UBP11YKR098C CHC1P22137 1653 aaKnown RBP0.76□□□□□ -2.29
UBP11YKR098C NTE1Q04958 1679 aa0.76□□□□□ -2.29
UBP11YKR098C RRP5Q05022 1729 aaKnown RBP0.76□□□□□ -2.29
UBP11YKR098C RPA12P32529 125 aaKnown RBP0.76□□□□□ -2.29
UBP11YKR098C YNL198CP40166 100 aa0.76□□□□□ -2.29
UBP11YKR098C SMX2P40204 77 aaKnown RBP0.76□□□□□ -2.29
UBP11YKR098C YPR145C-AQ2V2P0 78 aa0.76□□□□□ -2.29
UBP11YKR098C YCL048W-AQ2V2Q2 79 aa0.76□□□□□ -2.29
UBP11YKR098C GDB1Q06625 1536 aa0.75□□□□□ -2.29
UBP11YKR098C RPA190P10964 1664 aaKnown RBP0.75□□□□□ -2.29
UBP11YKR098C MLP2P40457 1679 aa0.75□□□□□ -2.29
UBP11YKR098C POL2P21951 2222 aaKnown RBP0.75□□□□□ -2.29
UBP11YKR098C PDX3P38075 228 aaKnown RBP0.75□□□□□ -2.29
UBP11YKR098C YBR292CP38357 123 aa0.75□□□□□ -2.29
UBP11YKR098C YDR042CQ03205 200 aa0.75□□□□□ -2.29
UBP11YKR098C YOL118CQ08259 102 aa0.75□□□□□ -2.29
UBP11YKR098C TY3B-IQ7LHG5 1498 aaKnown RBP0.75□□□□□ -2.29
UBP11YKR098C PDR12Q02785 1511 aa0.75□□□□□ -2.29
UBP11YKR098C DNF1P32660 1571 aa0.75□□□□□ -2.29
UBP11YKR098C RKR1Q04781 1562 aa0.75□□□□□ -2.29
UBP11YKR098C DOP1Q03921 1698 aa0.75□□□□□ -2.29
UBP11YKR098C ECM29P38737 1868 aa0.75□□□□□ -2.29
UBP11YKR098C VTH1P40438 1549 aa0.74□□□□□ -2.29
UBP11YKR098C VTH2P40890 1549 aa0.74□□□□□ -2.29
UBP11YKR098C MRP17P28778 131 aa0.74□□□□□ -2.29
UBP11YKR098C YDR119W-AQ2V2P9 66 aa0.74□□□□□ -2.29
UBP11YKR098C VMA9Q3E7B6 73 aa0.74□□□□□ -2.29
UBP11YKR098C PDR5P33302 1511 aaKnown RBP0.74□□□□□ -2.29
UBP11YKR098C UFD4P33202 1483 aa0.74□□□□□ -2.29
UBP11YKR098C YLR255CO13574 117 aa0.74□□□□□ -2.29
UBP11YKR098C NHP2P32495 156 aaPredicted RBP0.74□□□□□ -2.29
UBP11YKR098C TOM6P33448 61 aa0.74□□□□□ -2.29
UBP11YKR098C GCV3P39726 170 aaPredicted RBP0.74□□□□□ -2.29
UBP11YKR098C MIX14Q04341 121 aa0.74□□□□□ -2.29
UBP11YKR098C YRF1-1P0CX20 1796 aa0.74□□□□□ -2.29
UBP11YKR098C YRF1-5P0CX21 1796 aa0.74□□□□□ -2.29
UBP11YKR098C YRF1-8P0CX22 1796 aa0.74□□□□□ -2.29
UBP11YKR098C ESP1Q03018 1630 aa0.74□□□□□ -2.29
UBP11YKR098C CDC25P04821 1589 aa0.74□□□□□ -2.29
UBP11YKR098C AUA1P32450 94 aa0.73□□□□□ -2.29
UBP11YKR098C RSM18P40033 138 aa0.73□□□□□ -2.29
UBP11YKR098C IMP2P46972 177 aa0.73□□□□□ -2.29
UBP11YKR098C ICY1Q04329 127 aa0.73□□□□□ -2.29
UBP11YKR098C YIL102C-AQ2V2P5 75 aa0.73□□□□□ -2.29
UBP11YKR098C YMR175W-AQ3E766 64 aa0.73□□□□□ -2.29
UBP11YKR098C YFL041W-AQ3E817 63 aa0.73□□□□□ -2.29
UBP11YKR098C BCK1Q01389 1478 aa0.73□□□□□ -2.29
UBP11YKR098C TIM12P32830 109 aa0.73□□□□□ -2.29
UBP11YKR098C PAU5P43575 122 aa0.73□□□□□ -2.29
UBP11YKR098C YOR105WQ08504 108 aa0.73□□□□□ -2.29
UBP11YKR098C YDR381C-AQ3E6R5 114 aa0.73□□□□□ -2.29
UBP11YKR098C YPL038W-AQ3E7B4 63 aa0.73□□□□□ -2.29
UBP11YKR098C TY3B-GQ99315 1547 aa0.73□□□□□ -2.29
UBP11YKR098C BPH1P25356 2167 aa0.73□□□□□ -2.29
UBP11YKR098C RIM15P43565 1770 aa0.72□□□□□ -2.29
UBP11YKR098C FKS3Q04952 1785 aa0.72□□□□□ -2.29
UBP11YKR098C GCN2P15442 1659 aa0.72□□□□□ -2.29
UBP11YKR098C HIR3P47171 1648 aa0.72□□□□□ -2.29
UBP11YKR098C FPR2P32472 135 aa0.72□□□□□ -2.29
UBP11YKR098C MHF2Q3E829 80 aa0.72□□□□□ -2.29
UBP11YKR098C YBT1P32386 1661 aa0.72□□□□□ -2.29
UBP11YKR098C CCW14O13547 238 aa0.72□□□□□ -2.29
UBP11YKR098C YHR214C-DP0CX93 97 aa0.72□□□□□ -2.29
UBP11YKR098C ROX3P25046 220 aa0.72□□□□□ -2.29
UBP11YKR098C SPC1P46965 94 aa0.72□□□□□ -2.29
UBP11YKR098C APC1P53886 1748 aa0.71□□□□□ -2.29
Retrieved 100 of 5,963 RNA–protein pairs in 50.5 ms