RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C DRS1P32892 752 aaKnown RBP6.5□□□□□ -1.37
UBP11YKR098C MTC1P47018 478 aaKnown RBP6.23□□□□□ -1.41
UBP11YKR098C FAP1P53971 965 aa6.16□□□□□ -1.42
UBP11YKR098C PRY3P47033 881 aa5.82□□□□□ -1.48
UBP11YKR098C BFR2Q06631 534 aaKnown RBP5.72□□□□□ -1.49
UBP11YKR098C TFA1P36100 482 aa5.57□□□□□ -1.52
UBP11YKR098C YCK3P39962 524 aa5.49□□□□□ -1.53
UBP11YKR098C AVT3P36062 692 aa5.46□□□□□ -1.54
UBP11YKR098C DIP2Q12220 943 aaPredicted RBP5.45□□□□□ -1.54
UBP11YKR098C AAD16Q02895 342 aa5.42□□□□□ -1.54
UBP11YKR098C PRI1P10363 409 aa5.38□□□□□ -1.55
UBP11YKR098C HAA1Q12753 694 aaKnown RBP5.38□□□□□ -1.55
UBP11YKR098C TSR3Q12094 313 aaKnown RBP5.06□□□□□ -1.6
UBP11YKR098C RSE1Q04693 1361 aaKnown RBP5.06□□□□□ -1.6
UBP11YKR098C ISW2Q08773 1120 aa5.01□□□□□ -1.61
UBP11YKR098C RPG1P38249 964 aaKnown RBP5.01□□□□□ -1.61
UBP11YKR098C RQC2Q12532 1038 aaKnown RBP4.96□□□□□ -1.62
UBP11YKR098C RPL17AP05740 184 aaKnown RBP4.85□□□□□ -1.63
UBP11YKR098C RPL17BP46990 184 aaKnown RBP4.85□□□□□ -1.63
UBP11YKR098C YGL015CP33199 130 aa4.84□□□□□ -1.64
UBP11YKR098C MRPL32P25348 183 aa4.83□□□□□ -1.64
UBP11YKR098C BUD31P25337 157 aaPredicted RBP4.78□□□□□ -1.64
UBP11YKR098C REB1P21538 810 aa4.77□□□□□ -1.65
UBP11YKR098C SPT21P35209 758 aa4.72□□□□□ -1.65
UBP11YKR098C RIM101P33400 625 aa4.71□□□□□ -1.66
UBP11YKR098C DMA1P38823 416 aa4.69□□□□□ -1.66
UBP11YKR098C PTP3P40048 928 aa4.69□□□□□ -1.66
UBP11YKR098C SSP1P38871 571 aa4.6□□□□□ -1.67
UBP11YKR098C OXP1P28273 1286 aa4.57□□□□□ -1.68
UBP11YKR098C SIS1P25294 352 aaKnown RBP4.51□□□□□ -1.69
UBP11YKR098C YAH1Q12184 172 aaKnown RBP4.51□□□□□ -1.69
UBP11YKR098C YKR023WP36119 530 aaKnown RBP4.51□□□□□ -1.69
UBP11YKR098C CDC27P38042 758 aa4.49□□□□□ -1.69
UBP11YKR098C YLR271WQ06152 274 aa4.49□□□□□ -1.69
UBP11YKR098C YIL055CP40523 627 aaKnown RBP4.48□□□□□ -1.69
UBP11YKR098C ARP8Q12386 881 aaKnown RBP RIP-Chip data4.48□□□□□ -1.69not detected
UBP11YKR098C MAP2P38174 421 aaKnown RBP4.43□□□□□ -1.7
UBP11YKR098C TAF7Q05021 590 aa4.43□□□□□ -1.7
UBP11YKR098C MGA2P40578 1113 aa4.42□□□□□ -1.7
UBP11YKR098C RSM7P47150 247 aa4.42□□□□□ -1.7
UBP11YKR098C TFC8Q12308 588 aa4.42□□□□□ -1.7
UBP11YKR098C UBP10P53874 792 aaPredicted RBP4.41□□□□□ -1.7
UBP11YKR098C HOP09932 586 aa4.41□□□□□ -1.7
UBP11YKR098C LEO1P38439 464 aa4.4□□□□□ -1.71
UBP11YKR098C DCD1P06773 312 aa4.37□□□□□ -1.71
UBP11YKR098C CST9Q06032 482 aa4.37□□□□□ -1.71
UBP11YKR098C SAS10Q12136 610 aaPredicted RBP4.37□□□□□ -1.71
UBP11YKR098C PSD2P53037 1138 aaKnown RBP4.34□□□□□ -1.71
UBP11YKR098C AI2P03876 854 aa4.33□□□□□ -1.72
UBP11YKR098C UBP9P39967 754 aa4.32□□□□□ -1.72
UBP11YKR098C LEU3P08638 886 aa4.31□□□□□ -1.72
UBP11YKR098C BCH2P36122 765 aa4.3□□□□□ -1.72
UBP11YKR098C BBC1P47068 1157 aa4.27□□□□□ -1.73
UBP11YKR098C RAM2P29703 316 aa4.24□□□□□ -1.73
UBP11YKR098C TIF4632P39936 914 aaKnown RBP4.24□□□□□ -1.73
UBP11YKR098C TGL3P40308 642 aa4.23□□□□□ -1.73
UBP11YKR098C EPS1P40557 701 aa4.23□□□□□ -1.73
UBP11YKR098C MRM1P25270 412 aa4.21□□□□□ -1.74
UBP11YKR098C BDF1P35817 686 aa4.21□□□□□ -1.74
UBP11YKR098C RCR1P38212 213 aa4.2□□□□□ -1.74
UBP11YKR098C SET1P38827 1080 aaKnown RBP4.2□□□□□ -1.74
UBP11YKR098C SCY1P53009 804 aa4.2□□□□□ -1.74
UBP11YKR098C SLX5P32828 619 aaKnown RBP4.17□□□□□ -1.74
UBP11YKR098C YPR148CQ06523 435 aa4.17□□□□□ -1.74
UBP11YKR098C RTG3P38165 486 aa4.17□□□□□ -1.74
UBP11YKR098C RPN1P38764 993 aaKnown RBP4.17□□□□□ -1.74
UBP11YKR098C CKB1P43639 278 aa4.16□□□□□ -1.74
UBP11YKR098C MAK11P20484 414 aaKnown RBP4.15□□□□□ -1.75
UBP11YKR098C VPS70P47161 811 aa4.15□□□□□ -1.75
UBP11YKR098C IFH1P39520 1085 aa4.14□□□□□ -1.75
UBP11YKR098C SPB4P25808 606 aaPredicted RBP4.14□□□□□ -1.75
UBP11YKR098C VPS29P38759 282 aa4.12□□□□□ -1.75
UBP11YKR098C DMA2P53924 522 aa4.1□□□□□ -1.75
UBP11YKR098C COQ8P27697 501 aa4.09□□□□□ -1.76
UBP11YKR098C DSF2P38213 736 aa4.09□□□□□ -1.76
UBP11YKR098C PBS2P08018 668 aa4.07□□□□□ -1.76
UBP11YKR098C YBL029C-AQ3E756 94 aa4.06□□□□□ -1.76
UBP11YKR098C NOP53Q12080 455 aaKnown RBP4.06□□□□□ -1.76
UBP11YKR098C STS1P38637 319 aa4.05□□□□□ -1.76
UBP11YKR098C YMR1P47147 688 aaKnown RBP RIP-Chip data4.05□□□□□ -1.76not detected
UBP11YKR098C EDS1P38073 919 aa4.04□□□□□ -1.76
UBP11YKR098C MIF2P35201 549 aa4.03□□□□□ -1.76
UBP11YKR098C DBP1P24784 617 aaKnown RBP4.03□□□□□ -1.76
UBP11YKR098C YNR021WP53723 404 aaKnown RBP4.02□□□□□ -1.77
UBP11YKR098C REF2P42073 533 aaPredicted RBP4.02□□□□□ -1.77
UBP11YKR098C ABP1P15891 592 aaKnown RBP4.01□□□□□ -1.77
UBP11YKR098C YFR006WP43590 535 aa4.01□□□□□ -1.77
UBP11YKR098C MAM3Q12296 706 aa4.01□□□□□ -1.77
UBP11YKR098C KIN1P13185 1064 aa4□□□□□ -1.77
UBP11YKR098C YOR238WQ08634 303 aa4□□□□□ -1.77
UBP11YKR098C IES2P40154 320 aa3.99□□□□□ -1.77
UBP11YKR098C NUP42P49686 430 aaKnown RBP3.99□□□□□ -1.77
UBP11YKR098C GLC3P32775 704 aa3.99□□□□□ -1.77
UBP11YKR098C PTC3P34221 468 aaKnown RBP3.99□□□□□ -1.77
UBP11YKR098C AIM7Q12156 149 aa3.99□□□□□ -1.77
UBP11YKR098C DIT2P21595 489 aa3.98□□□□□ -1.77
UBP11YKR098C MST1P07236 462 aa3.97□□□□□ -1.77
UBP11YKR098C RLF2Q12495 606 aa3.97□□□□□ -1.77
UBP11YKR098C COX6P00427 148 aa3.97□□□□□ -1.77
UBP11YKR098C NSR1P27476 414 aaKnown RBP RIP-Chip data3.97□□□□□ -1.77not detected
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms