RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	TRP5	P00931	707 aa	Known RBP	19.16	■□□□□ 0.66
CCC1	YLR220W	BOI2	P39969	1040 aa		19.16	■□□□□ 0.66
CCC1	YLR220W	SWC3	P31376	625 aa		19.15	■□□□□ 0.66
CCC1	YLR220W	PKH1	Q03407	766 aa		19.14	■□□□□ 0.65
CCC1	YLR220W	FCP1	Q03254	732 aa		19.13	■□□□□ 0.65
CCC1	YLR220W	ERT1	P38140	529 aa		19.12	■□□□□ 0.65
CCC1	YLR220W	PFF1	P38244	976 aa		19.12	■□□□□ 0.65
CCC1	YLR220W	UBP12	P39538	1254 aa		19.12	■□□□□ 0.65
CCC1	YLR220W	ITC1	P53125	1264 aa		19.12	■□□□□ 0.65
CCC1	YLR220W	POL32	P47110	350 aa		19.11	■□□□□ 0.65
CCC1	YLR220W	BDF2	Q07442	638 aa		19.11	■□□□□ 0.65
CCC1	YLR220W	MSN5	P52918	1224 aa		19.09	■□□□□ 0.65
CCC1	YLR220W	MTC5	Q03897	1148 aa		19.09	■□□□□ 0.65
CCC1	YLR220W	YNG2	P38806	282 aa	Known RBP	19.08	■□□□□ 0.64
CCC1	YLR220W	EAF6	P47128	113 aa		19.08	■□□□□ 0.64
CCC1	YLR220W	SAC3	P46674	1301 aa		19.07	■□□□□ 0.64
CCC1	YLR220W	YKL222C	P35995	705 aa		19.07	■□□□□ 0.64
CCC1	YLR220W	SIT4	P20604	311 aa		19.05	■□□□□ 0.64
CCC1	YLR220W	SYF1	Q04048	859 aa	Predicted RBP	19.05	■□□□□ 0.64
CCC1	YLR220W	PUF6	Q04373	656 aa	Known RBP	19.05	■□□□□ 0.64
CCC1	YLR220W	PSH1	Q12161	406 aa		19.05	■□□□□ 0.64
CCC1	YLR220W	CTT1	P06115	562 aa		19.04	■□□□□ 0.64
CCC1	YLR220W	GCD7	P32502	381 aa	Predicted RBP	19.04	■□□□□ 0.64
CCC1	YLR220W	HGH1	P48362	394 aa	Known RBP	19.04	■□□□□ 0.64
CCC1	YLR220W	UBP16	Q02863	499 aa		19.03	■□□□□ 0.64
CCC1	YLR220W	ILV3	P39522	585 aa	Known RBP	19.02	■□□□□ 0.64
CCC1	YLR220W	SPO1	P53541	631 aa		19.02	■□□□□ 0.64
CCC1	YLR220W	ERO1	Q03103	563 aa		19.01	■□□□□ 0.63
CCC1	YLR220W	SMY1	P32364	656 aa	Known RBP	19	■□□□□ 0.63
CCC1	YLR220W	CWH41	P53008	833 aa		19	■□□□□ 0.63
CCC1	YLR220W	KIN4	Q01919	800 aa		19	■□□□□ 0.63
CCC1	YLR220W	IRC3	Q06683	689 aa		19	■□□□□ 0.63
CCC1	YLR220W	SUP35	P05453	685 aa	Known RBP	18.99	■□□□□ 0.63
CCC1	YLR220W	HXT10	P43581	546 aa		18.99	■□□□□ 0.63
CCC1	YLR220W	FPR3	P38911	411 aa	Known RBP	18.96	■□□□□ 0.63
CCC1	YLR220W	PMD1	P32634	1753 aa		18.93	■□□□□ 0.62
CCC1	YLR220W	CAF20	P12962	161 aa	Known RBP	18.93	■□□□□ 0.62
CCC1	YLR220W	FRD1	P32614	470 aa	Known RBP	18.93	■□□□□ 0.62
CCC1	YLR220W	TFA1	P36100	482 aa		18.92	■□□□□ 0.62
CCC1	YLR220W	SSF1	P38789	453 aa	Predicted RBP	18.92	■□□□□ 0.62
CCC1	YLR220W	YER156C	P40093	338 aa	Known RBP	18.91	■□□□□ 0.62
CCC1	YLR220W	DPH6	Q12429	685 aa		18.91	■□□□□ 0.62
CCC1	YLR220W	ICP55	P40051	511 aa		18.9	■□□□□ 0.62
CCC1	YLR220W	RPN1	P38764	993 aa	Known RBP	18.89	■□□□□ 0.61
CCC1	YLR220W	SSA1	P10591	642 aa	Known RBP	18.88	■□□□□ 0.61
CCC1	YLR220W	SNU66	Q12420	587 aa	Predicted RBP	18.88	■□□□□ 0.61
CCC1	YLR220W	ADR1	P07248	1323 aa		18.87	■□□□□ 0.61
CCC1	YLR220W	SAS4	Q04003	481 aa		18.87	■□□□□ 0.61
CCC1	YLR220W	GYP5	Q12344	894 aa		18.84	■□□□□ 0.61
CCC1	YLR220W	KRE2	P27809	442 aa		18.83	■□□□□ 0.6
CCC1	YLR220W	NGR1	P32831	672 aa	Known RBP	18.83	■□□□□ 0.6
CCC1	YLR220W	GRX6	Q12438	231 aa		18.83	■□□□□ 0.6
CCC1	YLR220W	MGM1	P32266	881 aa		18.82	■□□□□ 0.6
CCC1	YLR220W	NMD2	P38798	1089 aa	Known RBP	18.82	■□□□□ 0.6
CCC1	YLR220W	THI3	Q07471	609 aa		18.82	■□□□□ 0.6
CCC1	YLR220W	SPL2	P38839	148 aa		18.81	■□□□□ 0.6
CCC1	YLR220W	NCB2	Q92317	146 aa		18.8	■□□□□ 0.6
CCC1	YLR220W	RPS9B	P05755	195 aa	Known RBP	18.79	■□□□□ 0.6
CCC1	YLR220W	SEC18	P18759	758 aa	Known RBP	18.79	■□□□□ 0.6
CCC1	YLR220W	RET1	P22276	1149 aa	Known RBP	18.79	■□□□□ 0.6
CCC1	YLR220W	YKU70	P32807	602 aa		18.79	■□□□□ 0.6
CCC1	YLR220W	NUG1	P40010	520 aa	Known RBP	18.79	■□□□□ 0.6
CCC1	YLR220W	ICL1	P28240	557 aa	Predicted RBP	18.77	■□□□□ 0.6
CCC1	YLR220W	SRC1	Q03707	834 aa		18.77	■□□□□ 0.6
CCC1	YLR220W	POM152	P39685	1337 aa		18.76	■□□□□ 0.59
CCC1	YLR220W	CDC16	P09798	840 aa		18.76	■□□□□ 0.59
CCC1	YLR220W	UBX2	Q04228	584 aa		18.76	■□□□□ 0.59
CCC1	YLR220W	YGL242C	P53066	181 aa		18.75	■□□□□ 0.59
CCC1	YLR220W	ECM16	Q04217	1267 aa	Known RBP	18.75	■□□□□ 0.59
CCC1	YLR220W	SHC1	P39000	512 aa		18.74	■□□□□ 0.59
CCC1	YLR220W	RPT4	P53549	437 aa	Known RBP	18.74	■□□□□ 0.59
CCC1	YLR220W	SLA1	P32790	1244 aa		18.73	■□□□□ 0.59
CCC1	YLR220W	AI2	P03876	854 aa		18.72	■□□□□ 0.59
CCC1	YLR220W	KTR3	P38130	404 aa	Predicted RBP	18.72	■□□□□ 0.59
CCC1	YLR220W	NOT3	P06102	836 aa	Known RBP	18.71	■□□□□ 0.59
CCC1	YLR220W	RFC1	P38630	861 aa	Known RBP	18.71	■□□□□ 0.59
CCC1	YLR220W	GLO3	P38682	493 aa	Known RBP	18.71	■□□□□ 0.59
CCC1	YLR220W	SET4	P42948	560 aa		18.71	■□□□□ 0.59
CCC1	YLR220W	HKR1	P41809	1802 aa		18.71	■□□□□ 0.59
CCC1	YLR220W	FIG2	P25653	1609 aa		18.71	■□□□□ 0.58
CCC1	YLR220W	DPL1	Q05567	589 aa		18.7	■□□□□ 0.58
CCC1	YLR220W	DIP2	Q12220	943 aa	Predicted RBP	18.7	■□□□□ 0.58
CCC1	YLR220W	DUR1,2	P32528	1835 aa	Known RBP	18.7	■□□□□ 0.58
CCC1	YLR220W	LCB1	P25045	558 aa	Known RBP	18.69	■□□□□ 0.58
CCC1	YLR220W	HAL5	P38970	855 aa	Known RBP	18.69	■□□□□ 0.58
CCC1	YLR220W	BDP1	P46678	594 aa		18.69	■□□□□ 0.58
CCC1	YLR220W	YNL193W	P53870	558 aa		18.69	■□□□□ 0.58
CCC1	YLR220W	NKP2	Q06162	153 aa		18.69	■□□□□ 0.58
CCC1	YLR220W	ECM21	P38167	1117 aa	Known RBP	18.68	■□□□□ 0.58
CCC1	YLR220W	MLC1	P53141	149 aa		18.68	■□□□□ 0.58
CCC1	YLR220W	RPN7	Q06103	429 aa	Known RBP	18.68	■□□□□ 0.58
CCC1	YLR220W	FPK1	P53739	893 aa		18.67	■□□□□ 0.58
CCC1	YLR220W	ALO1	P54783	526 aa	Known RBP	18.67	■□□□□ 0.58
CCC1	YLR220W	IRC4	Q03036	179 aa		18.67	■□□□□ 0.58
CCC1	YLR220W	PIF1	P07271	859 aa		18.66	■□□□□ 0.58
CCC1	YLR220W	FAS2	P19097	1887 aa	Known RBP	18.65	■□□□□ 0.58
CCC1	YLR220W	ATG20	Q07528	640 aa		18.65	■□□□□ 0.58
CCC1	YLR220W	TOP1	P04786	769 aa		18.64	■□□□□ 0.57
CCC1	YLR220W	SQS1	P53866	767 aa	Known RBP	18.64	■□□□□ 0.57
CCC1	YLR220W	PDR18	P53756	1333 aa		18.64	■□□□□ 0.57

Retrieved 100 of 5,963 RNA–protein pairs in 43.2 ms