RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W SPT23P35210 1082 aa6.44□□□□□ -1.38
VPS29YHR012W RGA1P39083 1007 aa6.43□□□□□ -1.38
VPS29YHR012W YER156CP40093 338 aaKnown RBP6.43□□□□□ -1.38
VPS29YHR012W RRD1P40454 393 aaKnown RBP6.43□□□□□ -1.38
VPS29YHR012W ATH1P48016 1211 aa6.43□□□□□ -1.38
VPS29YHR012W INP54Q08227 384 aaKnown RBP6.43□□□□□ -1.38
VPS29YHR012W RPS9BP05755 195 aaKnown RBP6.41□□□□□ -1.38
VPS29YHR012W KAR2P16474 682 aaKnown RBP6.41□□□□□ -1.38
VPS29YHR012W GUT1P32190 709 aa6.41□□□□□ -1.38
VPS29YHR012W MDG1P53885 366 aa6.41□□□□□ -1.38
VPS29YHR012W PEX29Q03370 554 aa6.41□□□□□ -1.38
VPS29YHR012W HIM1Q06674 414 aa6.41□□□□□ -1.38
VPS29YHR012W HSP104P31539 908 aaKnown RBP6.4□□□□□ -1.38
VPS29YHR012W ERT1P38140 529 aa6.4□□□□□ -1.38
VPS29YHR012W PEX21P50091 288 aa6.4□□□□□ -1.38
VPS29YHR012W SRC1Q03707 834 aa6.4□□□□□ -1.38
VPS29YHR012W DSD1P53095 428 aa6.39□□□□□ -1.39
VPS29YHR012W NST1P53935 1240 aa6.39□□□□□ -1.39
VPS29YHR012W MHP1P43638 1398 aa6.39□□□□□ -1.39
VPS29YHR012W BUB1P41695 1021 aaKnown RBP RIP-Chip data6.38□□□□□ -1.39not detected
VPS29YHR012W MID1P41821 548 aa6.38□□□□□ -1.39
VPS29YHR012W CWH41P53008 833 aa6.38□□□□□ -1.39
VPS29YHR012W PDS5Q04264 1277 aa6.38□□□□□ -1.39
VPS29YHR012W AUS1Q08409 1394 aa6.38□□□□□ -1.39
VPS29YHR012W PFF1P38244 976 aa6.37□□□□□ -1.39
VPS29YHR012W PAP2P53632 584 aaKnown RBP6.37□□□□□ -1.39
VPS29YHR012W FPK1P53739 893 aa6.37□□□□□ -1.39
VPS29YHR012W SQS1P53866 767 aaKnown RBP6.37□□□□□ -1.39
VPS29YHR012W RMT2Q03305 412 aa6.37□□□□□ -1.39
VPS29YHR012W AOS1Q06624 347 aa6.37□□□□□ -1.39
VPS29YHR012W NYV1Q12255 253 aa6.37□□□□□ -1.39
VPS29YHR012W NUP145P49687 1317 aa6.36□□□□□ -1.39
VPS29YHR012W HAP5Q02516 242 aa6.36□□□□□ -1.39
VPS29YHR012W TUM1Q08686 304 aaKnown RBP6.36□□□□□ -1.39
VPS29YHR012W LPD1P09624 499 aaKnown RBP6.35□□□□□ -1.39
VPS29YHR012W KIN4Q01919 800 aa6.35□□□□□ -1.39
VPS29YHR012W RIX7Q07844 837 aaKnown RBP6.35□□□□□ -1.39
VPS29YHR012W KCC4P25389 1037 aa6.34□□□□□ -1.39
VPS29YHR012W AKL1P38080 1108 aaKnown RBP6.34□□□□□ -1.39
VPS29YHR012W POL5P39985 1022 aaKnown RBP6.34□□□□□ -1.39
VPS29YHR012W BUD27P43573 796 aaKnown RBP RIP-Chip data6.34□□□□□ -1.39not detected
VPS29YHR012W YFR016CP43597 1233 aaKnown RBP6.34□□□□□ -1.39
VPS29YHR012W BNI4P53858 892 aa6.34□□□□□ -1.39
VPS29YHR012W RAT1Q02792 1006 aaKnown RBP6.34□□□□□ -1.39
VPS29YHR012W DIB1Q06819 143 aaPredicted RBP6.34□□□□□ -1.39
VPS29YHR012W CTI6Q08923 506 aa6.34□□□□□ -1.39
VPS29YHR012W PHM7Q12252 991 aa6.34□□□□□ -1.39
VPS29YHR012W SSA4P22202 642 aaKnown RBP6.33□□□□□ -1.4
VPS29YHR012W SER1P33330 395 aaKnown RBP6.33□□□□□ -1.4
VPS29YHR012W PTC3P34221 468 aaKnown RBP6.33□□□□□ -1.4
VPS29YHR012W TEA1P47988 759 aa6.33□□□□□ -1.4
VPS29YHR012W YML082WQ04533 649 aaKnown RBP6.33□□□□□ -1.4
VPS29YHR012W PUS5Q06244 254 aa6.33□□□□□ -1.4
VPS29YHR012W IRC3Q06683 689 aa6.33□□□□□ -1.4
VPS29YHR012W NOP53Q12080 455 aaKnown RBP6.33□□□□□ -1.4
VPS29YHR012W AI4P03878 556 aa6.32□□□□□ -1.4
VPS29YHR012W PTC2P39966 464 aaKnown RBP6.32□□□□□ -1.4
VPS29YHR012W SSP2Q08646 371 aa6.32□□□□□ -1.4
VPS29YHR012W MAK11P20484 414 aaKnown RBP6.31□□□□□ -1.4
VPS29YHR012W ERO1Q03103 563 aa6.31□□□□□ -1.4
VPS29YHR012W MPH3P0CE00 602 aa6.3□□□□□ -1.4
VPS29YHR012W UGA3P26370 528 aa6.3□□□□□ -1.4
VPS29YHR012W YKU70P32807 602 aa6.3□□□□□ -1.4
VPS29YHR012W SLI15P38283 698 aa6.3□□□□□ -1.4
VPS29YHR012W SIT4P20604 311 aa6.29□□□□□ -1.4
VPS29YHR012W SMY1P32364 656 aaKnown RBP6.29□□□□□ -1.4
VPS29YHR012W NTH2P35172 780 aa6.29□□□□□ -1.4
VPS29YHR012W SHC1P39000 512 aa6.29□□□□□ -1.4
VPS29YHR012W NSE3Q05541 303 aa6.29□□□□□ -1.4
VPS29YHR012W BDF2Q07442 638 aa6.29□□□□□ -1.4
VPS29YHR012W RET1P22276 1149 aaKnown RBP6.28□□□□□ -1.4
VPS29YHR012W ATG20Q07528 640 aa6.28□□□□□ -1.4
VPS29YHR012W GRX6Q12438 231 aa6.28□□□□□ -1.4
VPS29YHR012W TOP1P04786 769 aa6.27□□□□□ -1.41
VPS29YHR012W ICL1P28240 557 aaPredicted RBP6.27□□□□□ -1.41
VPS29YHR012W EDS1P38073 919 aa6.27□□□□□ -1.41
VPS29YHR012W YGL082WP53155 381 aa6.27□□□□□ -1.41
VPS29YHR012W ALE1Q08548 619 aa6.27□□□□□ -1.41
VPS29YHR012W RTG2P32608 588 aaKnown RBP6.26□□□□□ -1.41
VPS29YHR012W MSM1P22438 575 aa6.25□□□□□ -1.41
VPS29YHR012W YNL050CP53952 270 aa6.25□□□□□ -1.41
VPS29YHR012W THS1P04801 734 aaKnown RBP6.24□□□□□ -1.41
VPS29YHR012W SOL3P38858 249 aa6.24□□□□□ -1.41
VPS29YHR012W SYF1Q04048 859 aaPredicted RBP6.24□□□□□ -1.41
VPS29YHR012W HAT1Q12341 374 aa6.24□□□□□ -1.41
VPS29YHR012W TRK1P12685 1235 aa6.23□□□□□ -1.41
VPS29YHR012W ZDS1P50111 915 aaKnown RBP6.23□□□□□ -1.41
VPS29YHR012W SAS4Q04003 481 aa6.23□□□□□ -1.41
VPS29YHR012W MAM1P40065 302 aa6.22□□□□□ -1.41
VPS29YHR012W MPC54Q08550 464 aa6.22□□□□□ -1.41
VPS29YHR012W FRD1P32614 470 aaKnown RBP6.21□□□□□ -1.42
VPS29YHR012W RPN1P38764 993 aaKnown RBP6.21□□□□□ -1.42
VPS29YHR012W IOC4Q04213 475 aa6.21□□□□□ -1.42
VPS29YHR012W SSK22P25390 1331 aaPredicted RBP6.21□□□□□ -1.42
VPS29YHR012W UTP10P42945 1769 aaKnown RBP6.21□□□□□ -1.42
VPS29YHR012W GLC3P32775 704 aa6.2□□□□□ -1.42
VPS29YHR012W VHR2P40041 505 aa6.2□□□□□ -1.42
VPS29YHR012W DPL1Q05567 589 aa6.2□□□□□ -1.42
VPS29YHR012W YLR278CQ05854 1341 aa6.2□□□□□ -1.42
VPS29YHR012W FAS2P19097 1887 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms