RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	KDM5D	Q9BY66	1539 aa		12.03	□□□□□ -0.48
SNHG1-223	ENST00000545440	DHX29	Q7Z478	1369 aa	Known RBP	12.03	□□□□□ -0.48
SNHG1-223	ENST00000545440	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.02	□□□□□ -0.49
SNHG1-223	ENST00000545440	ZFP91	Q96JP5	570 aa	Predicted RBP	12.02	□□□□□ -0.49
SNHG1-223	ENST00000545440	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.02	□□□□□ -0.49
SNHG1-223	ENST00000545440	ESF1	Q9H501	851 aa	Known RBP	12.02	□□□□□ -0.49
SNHG1-223	ENST00000545440	FGD6	Q6ZV73	1430 aa		12.02	□□□□□ -0.49
SNHG1-223	ENST00000545440	CEP152	O94986	1710 aa		12.01	□□□□□ -0.49
SNHG1-223	ENST00000545440	MROH1	Q8NDA8	1641 aa		12	□□□□□ -0.49
SNHG1-223	ENST00000545440	PDAP1	Q13442	181 aa	Known RBP	12	□□□□□ -0.49
SNHG1-223	ENST00000545440	DUOX2	Q9NRD8	1548 aa		12	□□□□□ -0.49
SNHG1-223	ENST00000545440	DEPDC5	O75140	1603 aa		12	□□□□□ -0.49
SNHG1-223	ENST00000545440	CEBPA	P49715	358 aa	Predicted RBP	11.99	□□□□□ -0.49
SNHG1-223	ENST00000545440	CCDC61	Q9Y6R9	512 aa		11.99	□□□□□ -0.49
SNHG1-223	ENST00000545440	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.99	□□□□□ -0.49
SNHG1-223	ENST00000545440	CAMSAP1	Q5T5Y3	1602 aa		11.98	□□□□□ -0.49
SNHG1-223	ENST00000545440	PRDM15	P57071	1507 aa	Predicted RBP	11.98	□□□□□ -0.49
SNHG1-223	ENST00000545440	ZMYM3	Q14202	1370 aa		11.98	□□□□□ -0.49
SNHG1-223	ENST00000545440	TSPY4	P0CV99	314 aa		11.98	□□□□□ -0.49
SNHG1-223	ENST00000545440	TSPY10	P0CW01	314 aa		11.98	□□□□□ -0.49
SNHG1-223	ENST00000545440	ZNF579	Q8NAF0	562 aa	Known RBP	11.98	□□□□□ -0.49
SNHG1-223	ENST00000545440	PCDHB13	Q9Y5F0	798 aa		11.98	□□□□□ -0.49
SNHG1-223	ENST00000545440	POLR1A	O95602	1720 aa	Predicted RBP	11.97	□□□□□ -0.49
SNHG1-223	ENST00000545440	DAPK1	P53355	1430 aa		11.97	□□□□□ -0.49
SNHG1-223	ENST00000545440	PTPRK	Q15262	1439 aa		11.97	□□□□□ -0.49
SNHG1-223	ENST00000545440	CD44	P16070	742 aa	Known RBP	11.97	□□□□□ -0.49
SNHG1-223	ENST00000545440	ZRANB1	Q9UGI0	708 aa		11.97	□□□□□ -0.49
SNHG1-223	ENST00000545440	PZP	P20742	1482 aa		11.96	□□□□□ -0.49
SNHG1-223	ENST00000545440	ABCC5	O15440	1437 aa		11.96	□□□□□ -0.49
SNHG1-223	ENST00000545440	HSPA2	P54652	639 aa		11.96	□□□□□ -0.49
SNHG1-223	ENST00000545440	ABCC3	O15438	1527 aa		11.96	□□□□□ -0.5
SNHG1-223	ENST00000545440	CFAP65	Q6ZU64	1925 aa	Known RBP	11.96	□□□□□ -0.5
SNHG1-223	ENST00000545440	ERBIN	Q96RT1	1412 aa		11.95	□□□□□ -0.5
SNHG1-223	ENST00000545440	GGT6	Q6P531	493 aa		11.95	□□□□□ -0.5
SNHG1-223	ENST00000545440	KIF3B	O15066	747 aa		11.93	□□□□□ -0.5
SNHG1-223	ENST00000545440	ADGRL2	O95490	1459 aa		11.93	□□□□□ -0.5
SNHG1-223	ENST00000545440	NCOA1	Q15788	1441 aa		11.93	□□□□□ -0.5
SNHG1-223	ENST00000545440	KIF15	Q9NS87	1388 aa		11.92	□□□□□ -0.5
SNHG1-223	ENST00000545440	SPATA31D1	Q6ZQQ2	1576 aa		11.92	□□□□□ -0.5
SNHG1-223	ENST00000545440	PLA2R1	Q13018	1463 aa		11.92	□□□□□ -0.5
SNHG1-223	ENST00000545440	PCDHB8	Q9UN66	801 aa		11.92	□□□□□ -0.5
SNHG1-223	ENST00000545440	PSEN1	P49768	467 aa		11.91	□□□□□ -0.5
SNHG1-223	ENST00000545440	A2ML1	A8K2U0	1454 aa		11.9	□□□□□ -0.5
SNHG1-223	ENST00000545440	VWDE	Q8N2E2	1590 aa		11.89	□□□□□ -0.51
SNHG1-223	ENST00000545440	PTPRT	O14522	1441 aa		11.89	□□□□□ -0.51
SNHG1-223	ENST00000545440	ANKRD30A	Q9BXX3	1397 aa		11.89	□□□□□ -0.51
SNHG1-223	ENST00000545440	NLRP1	Q9C000	1473 aa		11.89	□□□□□ -0.51
SNHG1-223	ENST00000545440	WASHC2C	Q9Y4E1	1318 aa		11.88	□□□□□ -0.51
SNHG1-223	ENST00000545440	UBR1	Q8IWV7	1749 aa		11.88	□□□□□ -0.51
SNHG1-223	ENST00000545440	UNC13B	O14795	1591 aa		11.88	□□□□□ -0.51
SNHG1-223	ENST00000545440	KDM5A	P29375	1690 aa	Known RBP	11.87	□□□□□ -0.51
SNHG1-223	ENST00000545440	GCC2	Q8IWJ2	1684 aa		11.87	□□□□□ -0.51
SNHG1-223	ENST00000545440	MAP3K13	O43283	966 aa		11.87	□□□□□ -0.51
SNHG1-223	ENST00000545440	KIF12	Q96FN5	646 aa		11.87	□□□□□ -0.51
SNHG1-223	ENST00000545440	BCAN	Q96GW7	911 aa		11.87	□□□□□ -0.51
SNHG1-223	ENST00000545440	TSHZ2	Q9NRE2	1034 aa		11.87	□□□□□ -0.51
SNHG1-223	ENST00000545440	TNR	Q92752	1358 aa		11.87	□□□□□ -0.51
SNHG1-223	ENST00000545440	ERVK-7	P63135	1459 aa		11.87	□□□□□ -0.51
SNHG1-223	ENST00000545440	LMTK2	Q8IWU2	1503 aa		11.86	□□□□□ -0.51
SNHG1-223	ENST00000545440	NEURL4	Q96JN8	1562 aa		11.86	□□□□□ -0.51
SNHG1-223	ENST00000545440	EFCAB6	Q5THR3	1501 aa		11.86	□□□□□ -0.51
SNHG1-223	ENST00000545440	TET3	O43151	1660 aa		11.85	□□□□□ -0.51
SNHG1-223	ENST00000545440	UGGT1	Q9NYU2	1555 aa		11.85	□□□□□ -0.51
SNHG1-223	ENST00000545440	GTPBP6	O43824	516 aa	Predicted RBP	11.85	□□□□□ -0.51
SNHG1-223	ENST00000545440	GOLGA2	Q08379	1002 aa		11.85	□□□□□ -0.51
SNHG1-223	ENST00000545440	NKX1-1	Q15270	411 aa	Predicted RBP	11.85	□□□□□ -0.51
SNHG1-223	ENST00000545440	ARHGAP31	Q2M1Z3	1444 aa		11.85	□□□□□ -0.51
SNHG1-223	ENST00000545440	IFNL1	Q8IU54	200 aa		11.84	□□□□□ -0.51
SNHG1-223	ENST00000545440	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.83	□□□□□ -0.52	7e-33	■□□□□ 8.4
SNHG1-223	ENST00000545440	ILDR1	Q86SU0	546 aa	Predicted RBP	11.83	□□□□□ -0.52
SNHG1-223	ENST00000545440	RRP7BP	Q9NSQ0	103 aa		11.83	□□□□□ -0.52
SNHG1-223	ENST00000545440	IQGAP1	P46940	1657 aa		11.83	□□□□□ -0.52
SNHG1-223	ENST00000545440	LTBP4	Q8N2S1	1624 aa		11.82	□□□□□ -0.52
SNHG1-223	ENST00000545440	FAM50A	Q14320	339 aa	Known RBP	11.82	□□□□□ -0.52
SNHG1-223	ENST00000545440	PIK3C2B	O00750	1634 aa		11.82	□□□□□ -0.52
SNHG1-223	ENST00000545440	IQGAP3	Q86VI3	1631 aa		11.82	□□□□□ -0.52
SNHG1-223	ENST00000545440	ROCK1	Q13464	1354 aa		11.81	□□□□□ -0.52
SNHG1-223	ENST00000545440	KANK1	Q14678	1352 aa		11.81	□□□□□ -0.52
SNHG1-223	ENST00000545440	ANKRD50	Q9ULJ7	1429 aa		11.81	□□□□□ -0.52
SNHG1-223	ENST00000545440	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.81	□□□□□ -0.52
SNHG1-223	ENST00000545440	MYO5B	Q9ULV0	1848 aa		11.81	□□□□□ -0.52
SNHG1-223	ENST00000545440	SYNM	O15061	1565 aa		11.8	□□□□□ -0.52
SNHG1-223	ENST00000545440	IQSEC2	Q5JU85	1478 aa		11.8	□□□□□ -0.52
SNHG1-223	ENST00000545440	RRBP1	Q9P2E9	1410 aa	Known RBP	11.79	□□□□□ -0.52
SNHG1-223	ENST00000545440		E9PCH4	1651 aa		11.79	□□□□□ -0.52
SNHG1-223	ENST00000545440	RPRD2	Q5VT52	1461 aa	Known RBP	11.79	□□□□□ -0.52
SNHG1-223	ENST00000545440	FBXO41	Q8TF61	875 aa		11.79	□□□□□ -0.52
SNHG1-223	ENST00000545440	PHF12	Q96QT6	1004 aa		11.79	□□□□□ -0.52
SNHG1-223	ENST00000545440	CHIC2	Q9UKJ5	165 aa		11.79	□□□□□ -0.52
SNHG1-223	ENST00000545440	MED14	O60244	1454 aa		11.77	□□□□□ -0.52
SNHG1-223	ENST00000545440	SLIT1	O75093	1534 aa		11.77	□□□□□ -0.52
SNHG1-223	ENST00000545440	C19orf67	A6NJJ6	358 aa		11.77	□□□□□ -0.53
SNHG1-223	ENST00000545440	SOX12	O15370	315 aa		11.76	□□□□□ -0.53
SNHG1-223	ENST00000545440	CLCN6	P51797	869 aa		11.76	□□□□□ -0.53
SNHG1-223	ENST00000545440	CERK	Q8TCT0	537 aa		11.76	□□□□□ -0.53
SNHG1-223	ENST00000545440	CABP2	Q9NPB3	220 aa		11.76	□□□□□ -0.53
SNHG1-223	ENST00000545440	KDM2A	Q9Y2K7	1162 aa		11.76	□□□□□ -0.53
SNHG1-223	ENST00000545440	NCKAP5L	Q9HCH0	1330 aa		11.76	□□□□□ -0.53
SNHG1-223	ENST00000545440	ADGRB3	O60242	1522 aa		11.76	□□□□□ -0.53
SNHG1-223	ENST00000545440	SPHKAP	Q2M3C7	1700 aa		11.75	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms