RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CLTCL1P53675 1640 aa7.38□□□□□ -1.23
USP28-213ENST00000544967 CHMP4AQ9BY43 222 aa7.38□□□□□ -1.23
USP28-213ENST00000544967 RBM19Q9Y4C8 960 aaKnown RBP7.38□□□□□ -1.23
USP28-213ENST00000544967 KIF1BO60333 1816 aa7.38□□□□□ -1.23
USP28-213ENST00000544967 A2ML1A8K2U0 1454 aa7.37□□□□□ -1.23
USP28-213ENST00000544967 PRAG1Q86YV5 1406 aa7.37□□□□□ -1.23
USP28-213ENST00000544967 MED14O60244 1454 aa7.37□□□□□ -1.23
USP28-213ENST00000544967 UBE2Q2Q8WVN8 375 aa7.37□□□□□ -1.23
USP28-213ENST00000544967 DIP2AQ14689 1571 aa7.36□□□□□ -1.23
USP28-213ENST00000544967 DHX57Q6P158 1386 aaKnown RBP7.36□□□□□ -1.23
USP28-213ENST00000544967 KDM2AQ9Y2K7 1162 aa7.36□□□□□ -1.23
USP28-213ENST00000544967 NRXN3Q9Y4C0 1643 aa7.36□□□□□ -1.23
USP28-213ENST00000544967 KIAA1210Q9ULL0 1709 aa7.35□□□□□ -1.23
USP28-213ENST00000544967 NWD1Q149M9 1564 aa7.35□□□□□ -1.23
USP28-213ENST00000544967 SETD5Q9C0A6 1442 aa7.35□□□□□ -1.23
USP28-213ENST00000544967 TSPY4P0CV99 314 aa7.35□□□□□ -1.23
USP28-213ENST00000544967 TSPY10P0CW01 314 aa7.35□□□□□ -1.23
USP28-213ENST00000544967 ZBTB22O15209 634 aa7.35□□□□□ -1.23
USP28-213ENST00000544967 LAMC1P11047 1609 aa7.34□□□□□ -1.23
USP28-213ENST00000544967 SETBP1Q9Y6X0 1596 aa7.34□□□□□ -1.23
USP28-213ENST00000544967 NRXN1Q9ULB1 1477 aa7.34□□□□□ -1.23
USP28-213ENST00000544967 KNDC1Q76NI1 1749 aa7.34□□□□□ -1.23
USP28-213ENST00000544967 ZMYM3Q14202 1370 aa7.34□□□□□ -1.24
USP28-213ENST00000544967 CCER2I3L3R5 266 aa7.33□□□□□ -1.24
USP28-213ENST00000544967 NEXMIFQ5QGS0 1516 aa7.33□□□□□ -1.24
USP28-213ENST00000544967 IQGAP1P46940 1657 aa7.33□□□□□ -1.24
USP28-213ENST00000544967 SAMD1Q6SPF0 538 aaPredicted RBP7.33□□□□□ -1.24
USP28-213ENST00000544967 ZFYVE9O95405 1425 aa7.32□□□□□ -1.24
USP28-213ENST00000544967 NEFLP07196 543 aa7.32□□□□□ -1.24
USP28-213ENST00000544967 ZNF777Q9ULD5 760 aaPredicted RBP7.32□□□□□ -1.24
USP28-213ENST00000544967 DHX37Q8IY37 1157 aaKnown RBP7.31□□□□□ -1.24
USP28-213ENST00000544967 XRN1Q8IZH2 1706 aaKnown RBP7.31□□□□□ -1.24
USP28-213ENST00000544967 KANK1Q14678 1352 aa7.3□□□□□ -1.24
USP28-213ENST00000544967 MYOM2P54296 1465 aa7.3□□□□□ -1.24
USP28-213ENST00000544967 SPATA31E1Q6ZUB1 1445 aa7.3□□□□□ -1.24
USP28-213ENST00000544967 IQSEC2Q5JU85 1478 aa7.29□□□□□ -1.24
USP28-213ENST00000544967 CHD2O14647 1828 aaKnown RBP7.29□□□□□ -1.24
USP28-213ENST00000544967 RAB3GAP2Q9H2M9 1393 aa7.29□□□□□ -1.24
USP28-213ENST00000544967 PDE4CQ08493 712 aa7.29□□□□□ -1.24
USP28-213ENST00000544967 XIRP1Q702N8 1843 aaKnown RBP7.29□□□□□ -1.24
USP28-213ENST00000544967 MSH5O43196 834 aa7.29□□□□□ -1.24
USP28-213ENST00000544967 ADRA2BP18089 450 aa7.29□□□□□ -1.24
USP28-213ENST00000544967 STRCP1A6NGW2 1772 aa7.28□□□□□ -1.24
USP28-213ENST00000544967 VSIG10Q8N0Z9 540 aa7.28□□□□□ -1.24
USP28-213ENST00000544967 UHRF1BP1Q6BDS2 1440 aa7.28□□□□□ -1.24
USP28-213ENST00000544967 TNRQ92752 1358 aa7.28□□□□□ -1.24
USP28-213ENST00000544967 LTBP4Q8N2S1 1624 aa7.26□□□□□ -1.25
USP28-213ENST00000544967 FAM50AQ14320 339 aaKnown RBP7.26□□□□□ -1.25
USP28-213ENST00000544967 FKBP8Q14318 412 aa7.26□□□□□ -1.25
USP28-213ENST00000544967 RRP7BPQ9NSQ0 103 aa7.26□□□□□ -1.25
USP28-213ENST00000544967 ANKRD30BQ9BXX2 1392 aa7.26□□□□□ -1.25
USP28-213ENST00000544967 KIF3BO15066 747 aa7.25□□□□□ -1.25
USP28-213ENST00000544967 ALKQ9UM73 1620 aa7.25□□□□□ -1.25
USP28-213ENST00000544967 TRPM1Q7Z4N2 1603 aa7.24□□□□□ -1.25
USP28-213ENST00000544967 CPS1P31327 1500 aa7.24□□□□□ -1.25
USP28-213ENST00000544967 DEKP35659 375 aaKnown RBP7.24□□□□□ -1.25
USP28-213ENST00000544967 IGSF3O75054 1194 aa7.24□□□□□ -1.25
USP28-213ENST00000544967 SCAF11Q99590 1463 aaKnown RBP7.23□□□□□ -1.25
USP28-213ENST00000544967 NUP155O75694 1391 aa7.23□□□□□ -1.25
USP28-213ENST00000544967 ADGRB2O60241 1585 aa7.23□□□□□ -1.25
USP28-213ENST00000544967 ASXL1Q8IXJ9 1541 aa7.23□□□□□ -1.25
USP28-213ENST00000544967 CFAP65Q6ZU64 1925 aaKnown RBP7.22□□□□□ -1.25
USP28-213ENST00000544967 CNKSR2Q8WXI2 1034 aa7.22□□□□□ -1.25
USP28-213ENST00000544967 SLC52A1Q9NWF4 448 aa7.22□□□□□ -1.25
USP28-213ENST00000544967 ADGRB1O14514 1584 aa7.22□□□□□ -1.25
USP28-213ENST00000544967 WASHC2CQ9Y4E1 1318 aa7.22□□□□□ -1.25
USP28-213ENST00000544967 DLC1Q96QB1 1528 aa7.22□□□□□ -1.25
USP28-213ENST00000544967 TMEM2Q9UHN6 1383 aa7.22□□□□□ -1.25
USP28-213ENST00000544967 NKTRP30414 1462 aaKnown RBP7.22□□□□□ -1.25
USP28-213ENST00000544967 PLEKHG1Q9ULL1 1385 aa7.21□□□□□ -1.25
USP28-213ENST00000544967 PIK3C2GO75747 1445 aa7.21□□□□□ -1.25
USP28-213ENST00000544967 TECPR2O15040 1411 aa7.21□□□□□ -1.26
USP28-213ENST00000544967 ARHGEF28Q8N1W1 1705 aaKnown RBP7.21□□□□□ -1.26
USP28-213ENST00000544967 PIK3R4Q99570 1358 aa7.2□□□□□ -1.26
USP28-213ENST00000544967 PPP1R15AO75807 674 aaPredicted RBP7.2□□□□□ -1.26
USP28-213ENST00000544967 CHIC2Q9UKJ5 165 aa7.2□□□□□ -1.26
USP28-213ENST00000544967 ADAMTS13Q76LX8 1427 aa7.2□□□□□ -1.26
USP28-213ENST00000544967 C11orf95C9JLR9 678 aaPredicted RBP7.19□□□□□ -1.26
USP28-213ENST00000544967 NCOA3Q9Y6Q9 1424 aa7.19□□□□□ -1.26
USP28-213ENST00000544967 RPGRIP1LQ68CZ1 1315 aa7.19□□□□□ -1.26
USP28-213ENST00000544967 CDK11BP21127 795 aaKnown RBP7.19□□□□□ -1.26
USP28-213ENST00000544967 BRD2P25440 801 aaKnown RBP7.18□□□□□ -1.26
USP28-213ENST00000544967 MPHOSPH9Q99550 1183 aa7.18□□□□□ -1.26
USP28-213ENST00000544967 ARID4BQ4LE39 1312 aaPredicted RBP7.18□□□□□ -1.26
USP28-213ENST00000544967 TOPAZ1Q8N9V7 1692 aa7.18□□□□□ -1.26
USP28-213ENST00000544967 PKD2Q13563 968 aa7.18□□□□□ -1.26
USP28-213ENST00000544967 PKNOX2Q96KN3 472 aa7.18□□□□□ -1.26
USP28-213ENST00000544967 STAC3Q96MF2 364 aa7.18□□□□□ -1.26
USP28-213ENST00000544967 NALCNQ8IZF0 1738 aa7.18□□□□□ -1.26
USP28-213ENST00000544967 NPHP4O75161 1426 aaPredicted RBP7.17□□□□□ -1.26
USP28-213ENST00000544967 PTCH1Q13635 1447 aa7.17□□□□□ -1.26
USP28-213ENST00000544967 GGT6Q6P531 493 aa7.17□□□□□ -1.26
USP28-213ENST00000544967 PPP4R2Q9NY27 417 aa7.17□□□□□ -1.26
USP28-213ENST00000544967 USP35Q9P2H5 1018 aa7.17□□□□□ -1.26
USP28-213ENST00000544967 CCDC144AA2RUR9 1427 aa7.17□□□□□ -1.26
USP28-213ENST00000544967 RIMS2Q9UQ26 1411 aa7.17□□□□□ -1.26
USP28-213ENST00000544967 TAF7LQ5H9L4 462 aa7.16□□□□□ -1.26
USP28-213ENST00000544967 BCL11BQ9C0K0 894 aaPredicted RBP7.16□□□□□ -1.26
USP28-213ENST00000544967 NOP58Q9Y2X3 529 aaKnown RBP7.16□□□□□ -1.26
USP28-213ENST00000544967 USP54Q70EL1 1684 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms