RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NISCHQ9Y2I1 1504 aa12.08□□□□□ -0.48
USP28-213ENST00000544967 CCDC180Q9P1Z9 1646 aa10.95□□□□□ -0.66
USP28-213ENST00000544967 MYO15BQ96JP2 1530 aa10.27□□□□□ -0.77
USP28-213ENST00000544967 DCAF1Q9Y4B6 1507 aa10.23□□□□□ -0.77
USP28-213ENST00000544967 ZCCHC6Q5VYS8 1495 aaKnown RBP10.16□□□□□ -0.78
USP28-213ENST00000544967 NACADO15069 1562 aa10.12□□□□□ -0.79
USP28-213ENST00000544967 ABCC9O60706 1549 aa10.09□□□□□ -0.79
USP28-213ENST00000544967 RB1CC1Q8TDY2 1594 aa10.04□□□□□ -0.8
USP28-213ENST00000544967 UNC13AQ9UPW8 1703 aa9.97□□□□□ -0.81
USP28-213ENST00000544967 SHROOM4Q9ULL8 1493 aa9.88□□□□□ -0.83
USP28-213ENST00000544967 BICRAQ9NZM4 1560 aa9.8□□□□□ -0.84
USP28-213ENST00000544967 SCRIBQ14160 1630 aa9.64□□□□□ -0.87
USP28-213ENST00000544967 SLC24A1O60721 1099 aa9.59□□□□□ -0.87
USP28-213ENST00000544967 PEG3Q9GZU2 1588 aa9.47□□□□□ -0.89
USP28-213ENST00000544967 EIF4G1Q04637 1599 aaKnown RBP9.45□□□□□ -0.9
USP28-213ENST00000544967 SMARCA4P51532 1647 aa9.4□□□□□ -0.91
USP28-213ENST00000544967 BAZ1AQ9NRL2 1556 aaPredicted RBP9.37□□□□□ -0.91
USP28-213ENST00000544967 CC2D2AQ9P2K1 1620 aa9.35□□□□□ -0.91
USP28-213ENST00000544967 HMGXB3Q12766 1538 aa9.34□□□□□ -0.91
USP28-213ENST00000544967 SMARCA2P51531 1590 aa9.33□□□□□ -0.92
USP28-213ENST00000544967 DCAF8L2P0C7V8 631 aa9.31□□□□□ -0.92
USP28-213ENST00000544967 NCAPD3P42695 1498 aa9.27□□□□□ -0.92
USP28-213ENST00000544967 PABPN1Q86U42 306 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP28-213ENST00000544967 CECR2Q9BXF3 1484 aa9.25□□□□□ -0.93
USP28-213ENST00000544967 MROH2BQ7Z745 1585 aa9.23□□□□□ -0.93
USP28-213ENST00000544967 ATAD2BQ9ULI0 1458 aa9.23□□□□□ -0.93
USP28-213ENST00000544967 PRDM2Q13029 1718 aa9.17□□□□□ -0.94
USP28-213ENST00000544967 TOP2AP11388 1531 aaKnown RBP9.17□□□□□ -0.94
USP28-213ENST00000544967 WIZO95785 1651 aa9.16□□□□□ -0.94
USP28-213ENST00000544967 RSF1Q96T23 1441 aaPredicted RBP9.14□□□□□ -0.95
USP28-213ENST00000544967 DNAJC5BQ9UF47 199 aa9.12□□□□□ -0.95
USP28-213ENST00000544967 BAZ1BQ9UIG0 1483 aaKnown RBP9.08□□□□□ -0.96
USP28-213ENST00000544967 LAMC3Q9Y6N6 1575 aa9.06□□□□□ -0.96
USP28-213ENST00000544967 CFTRP13569 1480 aa8.96□□□□□ -0.98
USP28-213ENST00000544967 THOC2Q8NI27 1593 aaKnown RBP8.96□□□□□ -0.98
USP28-213ENST00000544967 KIF21AQ7Z4S6 1674 aa8.93□□□□□ -0.98
USP28-213ENST00000544967 PELP1Q8IZL8 1130 aaKnown RBP8.93□□□□□ -0.98
USP28-213ENST00000544967 CCDC88BA6NC98 1476 aa8.92□□□□□ -0.98
USP28-213ENST00000544967 WDR62O43379 1518 aa8.88□□□□□ -0.99
USP28-213ENST00000544967 CADPSQ9ULU8 1353 aa8.87□□□□□ -0.99
USP28-213ENST00000544967 WDR97A6NE52 1622 aa8.83□□□□□ -1
USP28-213ENST00000544967 CUX2O14529 1486 aa8.83□□□□□ -1
USP28-213ENST00000544967 CHIC1Q5VXU3 224 aa8.83□□□□□ -1
USP28-213ENST00000544967 NESP48681 1621 aa8.82□□□□□ -1
USP28-213ENST00000544967 BIVM-ERCC5R4GMW8 1640 aa8.81□□□□□ -1
USP28-213ENST00000544967 PDS5BQ9NTI5 1447 aa8.8□□□□□ -1
USP28-213ENST00000544967 MRC2Q9UBG0 1479 aa8.79□□□□□ -1
USP28-213ENST00000544967 DNMBPQ6XZF7 1577 aa8.78□□□□□ -1
USP28-213ENST00000544967 FANCD2Q9BXW9 1451 aa8.77□□□□□ -1.01
USP28-213ENST00000544967 ABCC8Q09428 1581 aa8.77□□□□□ -1.01
USP28-213ENST00000544967 HRCP23327 699 aa8.77□□□□□ -1.01
USP28-213ENST00000544967 CEP164Q9UPV0 1460 aa8.76□□□□□ -1.01
USP28-213ENST00000544967 DAXXQ9UER7 740 aaPredicted RBP8.76□□□□□ -1.01
USP28-213ENST00000544967 MYT1Q01538 1121 aa8.74□□□□□ -1.01
USP28-213ENST00000544967 URB2Q14146 1524 aaKnown RBP8.74□□□□□ -1.01
USP28-213ENST00000544967 TARBP1Q13395 1621 aaKnown RBP8.74□□□□□ -1.01
USP28-213ENST00000544967 TOP2BQ02880 1626 aa8.73□□□□□ -1.01
USP28-213ENST00000544967 EHMT2Q96KQ7 1210 aa8.72□□□□□ -1.01
USP28-213ENST00000544967 TOPBP1Q92547 1522 aa8.7□□□□□ -1.02
USP28-213ENST00000544967 CUX1P39880 1505 aa8.69□□□□□ -1.02
USP28-213ENST00000544967 ABCA5Q8WWZ7 1642 aa8.67□□□□□ -1.02
USP28-213ENST00000544967 ERCC6Q03468 1493 aa8.66□□□□□ -1.02
USP28-213ENST00000544967 PLPPR3Q6T4P5 718 aa8.66□□□□□ -1.02
USP28-213ENST00000544967 SYNJ1O43426 1573 aa8.66□□□□□ -1.02
USP28-213ENST00000544967 IFT140Q96RY7 1462 aa8.64□□□□□ -1.03
USP28-213ENST00000544967 PBRM1Q86U86 1689 aa8.62□□□□□ -1.03
USP28-213ENST00000544967 POLA1P09884 1462 aaPredicted RBP8.61□□□□□ -1.03
USP28-213ENST00000544967 ABCA10Q8WWZ4 1543 aa8.61□□□□□ -1.03
USP28-213ENST00000544967 PRKCSHP14314 528 aaPredicted RBP8.61□□□□□ -1.03
USP28-213ENST00000544967 EIF4G3O43432 1585 aaKnown RBP8.61□□□□□ -1.03
USP28-213ENST00000544967 FGD5Q6ZNL6 1462 aa8.57□□□□□ -1.04
USP28-213ENST00000544967 RTN4Q9NQC3 1192 aaKnown RBP8.56□□□□□ -1.04
USP28-213ENST00000544967 WRNQ14191 1432 aaPredicted RBP eCLIP8.56□□□□□ -1.04
USP28-213ENST00000544967 ERICH3Q5RHP9 1530 aa8.54□□□□□ -1.04
USP28-213ENST00000544967 APLP2Q06481 763 aa8.54□□□□□ -1.04
USP28-213ENST00000544967 CUL7Q14999 1698 aa8.53□□□□□ -1.04
USP28-213ENST00000544967 ADAMTS12P58397 1594 aa8.52□□□□□ -1.05
USP28-213ENST00000544967 TTBK1Q5TCY1 1321 aaPredicted RBP8.52□□□□□ -1.05
USP28-213ENST00000544967 MAGI1Q96QZ7 1491 aaPredicted RBP8.5□□□□□ -1.05
USP28-213ENST00000544967 NCBP3Q53F19 620 aaKnown RBP8.5□□□□□ -1.05
USP28-213ENST00000544967 CHD1O14646 1710 aa8.49□□□□□ -1.05
USP28-213ENST00000544967 SUPT5HO00267 1087 aaKnown RBP8.49□□□□□ -1.05
USP28-213ENST00000544967 ZNF608Q9ULD9 1512 aaPredicted RBP8.48□□□□□ -1.05
USP28-213ENST00000544967 CLASP1Q7Z460 1538 aa8.47□□□□□ -1.05
USP28-213ENST00000544967 SHROOM2Q13796 1616 aa8.47□□□□□ -1.05
USP28-213ENST00000544967 SOGA1O94964 1423 aa8.46□□□□□ -1.06
USP28-213ENST00000544967 GRIN2BQ13224 1484 aa8.46□□□□□ -1.06
USP28-213ENST00000544967 RAD54L2Q9Y4B4 1467 aa8.45□□□□□ -1.06
USP28-213ENST00000544967 GAPVD1Q14C86 1478 aa8.43□□□□□ -1.06
USP28-213ENST00000544967 SYNJ2O15056 1496 aa8.42□□□□□ -1.06
USP28-213ENST00000544967 RUSC2Q8N2Y8 1516 aa8.41□□□□□ -1.06
USP28-213ENST00000544967 KIF21BO75037 1637 aa8.4□□□□□ -1.07
USP28-213ENST00000544967 CTTNBP2Q8WZ74 1663 aa8.4□□□□□ -1.07
USP28-213ENST00000544967 NUP160Q12769 1436 aa8.39□□□□□ -1.07
USP28-213ENST00000544967 EEA1Q15075 1411 aa8.39□□□□□ -1.07
USP28-213ENST00000544967 SNAPC4Q5SXM2 1469 aa8.39□□□□□ -1.07
USP28-213ENST00000544967 CEP170Q5SW79 1584 aa8.38□□□□□ -1.07
USP28-213ENST00000544967 FHAD1B1AJZ9 1412 aa8.38□□□□□ -1.07
USP28-213ENST00000544967 ZEB1P37275 1124 aaPredicted RBP8.38□□□□□ -1.07
USP28-213ENST00000544967 AQRO60306 1485 aaKnown RBP eCLIP8.37□□□□□ -1.073e-6■■■■□ 20.6
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms