RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ESF1Q9H501 851 aaKnown RBP9.72□□□□□ -0.85
HMGB1-207ENST00000468384 NPATQ14207 1427 aa9.72□□□□□ -0.85
HMGB1-207ENST00000468384 PSDA5PKW4 1024 aaPredicted RBP9.69□□□□□ -0.86
HMGB1-207ENST00000468384 RBM6P78332 1123 aaKnown RBP9.69□□□□□ -0.86
HMGB1-207ENST00000468384 LSM11P83369 360 aaKnown RBP eCLIP9.69□□□□□ -0.86
HMGB1-207ENST00000468384 HECW1Q76N89 1606 aa9.67□□□□□ -0.86
HMGB1-207ENST00000468384 SPDYE4A6NLX3 237 aa9.67□□□□□ -0.86
HMGB1-207ENST00000468384 CDK13Q14004 1512 aaKnown RBP9.66□□□□□ -0.86
HMGB1-207ENST00000468384 SPATA31A6Q5VVP1 1343 aa9.66□□□□□ -0.86
HMGB1-207ENST00000468384 NEURL4Q96JN8 1562 aa9.66□□□□□ -0.86
HMGB1-207ENST00000468384 ZNF142P52746 1687 aaPredicted RBP9.65□□□□□ -0.86
HMGB1-207ENST00000468384 LOC100996750A0A140TA64 210 aa9.65□□□□□ -0.86
HMGB1-207ENST00000468384 DOK7Q18PE1 504 aa9.65□□□□□ -0.86
HMGB1-207ENST00000468384 KRTAP4-6Q9BYQ5 205 aa9.65□□□□□ -0.86
HMGB1-207ENST00000468384 CEP170BQ9Y4F5 1589 aaPredicted RBP9.65□□□□□ -0.86
HMGB1-207ENST00000468384 SUPT6HQ7KZ85 1726 aaKnown RBP9.65□□□□□ -0.87
HMGB1-207ENST00000468384 AFF2P51816 1311 aa9.64□□□□□ -0.87
HMGB1-207ENST00000468384 LCE2BO14633 110 aa9.64□□□□□ -0.87
HMGB1-207ENST00000468384 BCL9LQ86UU0 1499 aa9.64□□□□□ -0.87
HMGB1-207ENST00000468384 QTRT2Q9H974 415 aaKnown RBP9.63□□□□□ -0.87
HMGB1-207ENST00000468384 CNTLNQ9NXG0 1405 aa9.63□□□□□ -0.87
HMGB1-207ENST00000468384 RGS20O76081 388 aa9.62□□□□□ -0.87
HMGB1-207ENST00000468384 SYNMO15061 1565 aa9.62□□□□□ -0.87
HMGB1-207ENST00000468384 ABCA8O94911 1581 aa9.62□□□□□ -0.87
HMGB1-207ENST00000468384 MYO3AQ8NEV4 1616 aa9.61□□□□□ -0.87
HMGB1-207ENST00000468384 DEFB132Q7Z7B7 95 aa9.61□□□□□ -0.87
HMGB1-207ENST00000468384 IQGAP2Q13576 1575 aa9.61□□□□□ -0.87
HMGB1-207ENST00000468384 ROBO1Q9Y6N7 1651 aa9.61□□□□□ -0.87
HMGB1-207ENST00000468384 GIGYF1O75420 1035 aaPredicted RBP9.6□□□□□ -0.87
HMGB1-207ENST00000468384 COL13A1Q5TAT6 717 aaPredicted RBP9.6□□□□□ -0.87
HMGB1-207ENST00000468384 STRCP1A6NGW2 1772 aa9.6□□□□□ -0.87
HMGB1-207ENST00000468384 NWD1Q149M9 1564 aa9.59□□□□□ -0.87
HMGB1-207ENST00000468384 NGLY1Q96IV0 654 aa9.59□□□□□ -0.87
HMGB1-207ENST00000468384 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.59□□□□□ -0.878e-9■■■□□ 17.4
HMGB1-207ENST00000468384 DPY19L2Q6NUT2 758 aa9.58□□□□□ -0.88
HMGB1-207ENST00000468384 ZMYM3Q14202 1370 aa9.58□□□□□ -0.88
HMGB1-207ENST00000468384 AGLP35573 1532 aa9.57□□□□□ -0.88
HMGB1-207ENST00000468384 POLR1AO95602 1720 aaPredicted RBP9.57□□□□□ -0.88
HMGB1-207ENST00000468384 ARID3CA6NKF2 412 aa9.57□□□□□ -0.88
HMGB1-207ENST00000468384 TNS4Q8IZW8 715 aa9.57□□□□□ -0.88
HMGB1-207ENST00000468384 ANKLE2Q86XL3 938 aa9.56□□□□□ -0.88
HMGB1-207ENST00000468384 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.56□□□□□ -0.885e-6■■■■□ 21.7
HMGB1-207ENST00000468384 UTRNP46939 3433 aa9.56□□□□□ -0.88
HMGB1-207ENST00000468384 PHLPP1O60346 1717 aa9.55□□□□□ -0.88
HMGB1-207ENST00000468384 NPHP4O75161 1426 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-207ENST00000468384 BLMP54132 1417 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-207ENST00000468384 FGD6Q6ZV73 1430 aa9.55□□□□□ -0.88
HMGB1-207ENST00000468384 CFAP74Q9C0B2 1584 aa9.54□□□□□ -0.88
HMGB1-207ENST00000468384 A2ML1A8K2U0 1454 aa9.53□□□□□ -0.88
HMGB1-207ENST00000468384 DNMT1P26358 1616 aaKnown RBP9.53□□□□□ -0.88
HMGB1-207ENST00000468384 POTEEQ6S8J3 1075 aa9.53□□□□□ -0.88
HMGB1-207ENST00000468384 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.53□□□□□ -0.882e-13■□□□□ 10.7
HMGB1-207ENST00000468384 SCAPERQ9BY12 1400 aa9.53□□□□□ -0.88
HMGB1-207ENST00000468384 ATP10BO94823 1461 aa9.53□□□□□ -0.88
HMGB1-207ENST00000468384 UGGT2Q9NYU1 1516 aa9.52□□□□□ -0.88
HMGB1-207ENST00000468384 RIMBP2O15034 1052 aa9.52□□□□□ -0.89
HMGB1-207ENST00000468384 KDM5CP41229 1560 aa9.52□□□□□ -0.89
HMGB1-207ENST00000468384 GPR153Q6NV75 609 aa9.52□□□□□ -0.89
HMGB1-207ENST00000468384 PCDHB8Q9UN66 801 aa9.52□□□□□ -0.89
HMGB1-207ENST00000468384 MED14O60244 1454 aa9.52□□□□□ -0.89
HMGB1-207ENST00000468384 IGF1RP08069 1367 aa9.51□□□□□ -0.89
HMGB1-207ENST00000468384 COL16A1Q07092 1604 aaPredicted RBP9.5□□□□□ -0.89
HMGB1-207ENST00000468384 MROH2AA6NES4 1674 aa9.49□□□□□ -0.89
HMGB1-207ENST00000468384 LRRC9Q6ZRR7 1453 aa9.49□□□□□ -0.89
HMGB1-207ENST00000468384 R3HDM1Q15032 1099 aaKnown RBP9.49□□□□□ -0.89
HMGB1-207ENST00000468384 REREQ9P2R6 1566 aa9.49□□□□□ -0.89
HMGB1-207ENST00000468384 RTEL1-TNFRSF6BF6WH68 1400 aa9.48□□□□□ -0.89
HMGB1-207ENST00000468384 SCAF11Q99590 1463 aaKnown RBP9.48□□□□□ -0.89
HMGB1-207ENST00000468384 XIRP1Q702N8 1843 aaKnown RBP9.48□□□□□ -0.89
HMGB1-207ENST00000468384 SF3B2Q13435 895 aaKnown RBP9.48□□□□□ -0.89
HMGB1-207ENST00000468384 HSPA6P17066 643 aa9.47□□□□□ -0.89
HMGB1-207ENST00000468384 C8orf37Q96NL8 207 aa9.47□□□□□ -0.89
HMGB1-207ENST00000468384 AXIN2Q9Y2T1 843 aa9.47□□□□□ -0.89
HMGB1-207ENST00000468384 KDM5DQ9BY66 1539 aa9.46□□□□□ -0.89
HMGB1-207ENST00000468384 A0A0G2JS52 829 aa9.46□□□□□ -0.9
HMGB1-207ENST00000468384 MKRN3Q13064 507 aaKnown RBP9.46□□□□□ -0.9
HMGB1-207ENST00000468384 NINLQ9Y2I6 1382 aa9.46□□□□□ -0.9
HMGB1-207ENST00000468384 SHPRHQ149N8 1683 aa9.45□□□□□ -0.9
HMGB1-207ENST00000468384 DIP2CQ9Y2E4 1556 aa9.44□□□□□ -0.9
HMGB1-207ENST00000468384 BIVM-ERCC5R4GMW8 1640 aa9.44□□□□□ -0.9
HMGB1-207ENST00000468384 CAMTA1Q9Y6Y1 1673 aa9.44□□□□□ -0.9
HMGB1-207ENST00000468384 IQGAP1P46940 1657 aa9.43□□□□□ -0.9
HMGB1-207ENST00000468384 DEPDC5O75140 1603 aa9.43□□□□□ -0.9
HMGB1-207ENST00000468384 NUBP1P53384 320 aa9.43□□□□□ -0.9
HMGB1-207ENST00000468384 SLAIN2Q9P270 581 aa9.43□□□□□ -0.9
HMGB1-207ENST00000468384 PPP1R1BQ9UD71 204 aaPredicted RBP9.42□□□□□ -0.9
HMGB1-207ENST00000468384 ABCC1P33527 1531 aa9.41□□□□□ -0.9
HMGB1-207ENST00000468384 TMEM94Q12767 1356 aa9.41□□□□□ -0.9
HMGB1-207ENST00000468384 MIER1Q8N108 512 aa9.41□□□□□ -0.9
HMGB1-207ENST00000468384 THEMISQ8N1K5 641 aaPredicted RBP9.41□□□□□ -0.9
HMGB1-207ENST00000468384 KHSRPQ92945 711 aaKnown RBP eCLIP9.41□□□□□ -0.9
HMGB1-207ENST00000468384 ZNF775Q96BV0 537 aaPredicted RBP9.41□□□□□ -0.9
HMGB1-207ENST00000468384 ZSWIM6Q9HCJ5 1215 aa9.41□□□□□ -0.9
HMGB1-207ENST00000468384 BOLA1Q9Y3E2 137 aa9.41□□□□□ -0.9
HMGB1-207ENST00000468384 CARMIL1Q5VZK9 1371 aa9.4□□□□□ -0.9
HMGB1-207ENST00000468384 ARSIQ5FYB1 569 aa9.4□□□□□ -0.9
HMGB1-207ENST00000468384 ZNF316A6NFI3 1004 aaPredicted RBP9.39□□□□□ -0.91
HMGB1-207ENST00000468384 TRAF7Q6Q0C0 670 aa9.39□□□□□ -0.91
HMGB1-207ENST00000468384 AFAP1Q8N556 730 aa9.39□□□□□ -0.91
HMGB1-207ENST00000468384 TRPC5Q9UL62 973 aaPredicted RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms