RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 AEBP2Q6ZN18 517 aaPredicted RBP23.88■■□□□ 1.41
HMGB1-207ENST00000468384 CHIC1Q5VXU3 224 aa22.01■■□□□ 1.11
HMGB1-207ENST00000468384 POTEDQ86YR6 584 aa20.93■□□□□ 0.94
HMGB1-207ENST00000468384 SENP3Q9H4L4 574 aaPredicted RBP20.36■□□□□ 0.85
HMGB1-207ENST00000468384 PHF23Q9BUL5 403 aaPredicted RBP20■□□□□ 0.79
HMGB1-207ENST00000468384 FOXD1Q16676 465 aa19.35■□□□□ 0.69
HMGB1-207ENST00000468384 MSH5O43196 834 aa18.49■□□□□ 0.55
HMGB1-207ENST00000468384 PIAS4Q8N2W9 510 aaPredicted RBP17.65■□□□□ 0.42
HMGB1-207ENST00000468384 PPP6R1Q9UPN7 881 aa16.98■□□□□ 0.31
HMGB1-207ENST00000468384 CACNB1Q02641 598 aaPredicted RBP16.96■□□□□ 0.31
HMGB1-207ENST00000468384 ADRA2BP18089 450 aa16.81■□□□□ 0.28
HMGB1-207ENST00000468384 POTEHQ6S545 545 aa16.05■□□□□ 0.16
HMGB1-207ENST00000468384 MAPK8IP2Q13387 824 aaPredicted RBP15.97■□□□□ 0.15
HMGB1-207ENST00000468384 PLPPR3Q6T4P5 718 aa15.96■□□□□ 0.15
HMGB1-207ENST00000468384 DMRT2Q9Y5R5 561 aa15.95■□□□□ 0.14
HMGB1-207ENST00000468384 RNF39Q9H2S5 420 aa15.75■□□□□ 0.11
HMGB1-207ENST00000468384 DCAF8L1A6NGE4 600 aa15.49■□□□□ 0.07
HMGB1-207ENST00000468384 C1QBPQ07021 282 aaKnown RBP15.31■□□□□ 0.04
HMGB1-207ENST00000468384 DNAJC5BQ9UF47 199 aa15.13■□□□□ 0.01
HMGB1-207ENST00000468384 SCAF1Q9H7N4 1312 aaKnown RBP15.06■□□□□ 0
HMGB1-207ENST00000468384 DNAJC5Q9H3Z4 198 aa15.01□□□□□ -0.01
HMGB1-207ENST00000468384 HOXD11P31277 338 aaPredicted RBP14.73□□□□□ -0.05
HMGB1-207ENST00000468384 ABCC9O60706 1549 aa14.58□□□□□ -0.08
HMGB1-207ENST00000468384 SP7Q8TDD2 431 aaPredicted RBP14.27□□□□□ -0.13
HMGB1-207ENST00000468384 DSG3P32926 999 aa14.25□□□□□ -0.13
HMGB1-207ENST00000468384 RNF216Q9NWF9 866 aaPredicted RBP14.16□□□□□ -0.14
HMGB1-207ENST00000468384 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.07□□□□□ -0.162e-7■■□□□ 14.5
HMGB1-207ENST00000468384 SPINK5Q9NQ38 1064 aaPredicted RBP14.02□□□□□ -0.17
HMGB1-207ENST00000468384 PLSCR2Q9NRY7 297 aa13.97□□□□□ -0.17
HMGB1-207ENST00000468384 CAPN15O75808 1086 aa13.96□□□□□ -0.17
HMGB1-207ENST00000468384 CHRDL2Q6WN34 429 aa13.94□□□□□ -0.18
HMGB1-207ENST00000468384 NISCHQ9Y2I1 1504 aa13.91□□□□□ -0.18
HMGB1-207ENST00000468384 CNKSR2Q8WXI2 1034 aa13.9□□□□□ -0.18
HMGB1-207ENST00000468384 PPP4R3CPQ6ZMV5 832 aa13.89□□□□□ -0.19
HMGB1-207ENST00000468384 TRIM41Q8WV44 630 aa13.7□□□□□ -0.22
HMGB1-207ENST00000468384 U3KPZ7 1027 aaPredicted RBP13.66□□□□□ -0.22
HMGB1-207ENST00000468384 ABCB7O75027 752 aa13.62□□□□□ -0.23
HMGB1-207ENST00000468384 HAX1O00165 279 aa13.48□□□□□ -0.25
HMGB1-207ENST00000468384 RBM42Q9BTD8 480 aaKnown RBP13.44□□□□□ -0.26
HMGB1-207ENST00000468384 TRHP20396 242 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-207ENST00000468384 LHX8Q68G74 356 aa13.39□□□□□ -0.27
HMGB1-207ENST00000468384 PABPN1Q86U42 306 aaKnown RBP eCLIP13.39□□□□□ -0.27
HMGB1-207ENST00000468384 EVX2Q03828 476 aa13.36□□□□□ -0.27
HMGB1-207ENST00000468384 PIP4P2Q8N4L2 257 aa13.31□□□□□ -0.28
HMGB1-207ENST00000468384 CECR2Q9BXF3 1484 aa13.3□□□□□ -0.28
HMGB1-207ENST00000468384 CUX2O14529 1486 aa13.18□□□□□ -0.3
HMGB1-207ENST00000468384 ILDR1Q86SU0 546 aaPredicted RBP13.15□□□□□ -0.3
HMGB1-207ENST00000468384 RB1CC1Q8TDY2 1594 aa13.15□□□□□ -0.3
HMGB1-207ENST00000468384 ZNF219Q9P2Y4 722 aaPredicted RBP13.13□□□□□ -0.31
HMGB1-207ENST00000468384 CC2D2AQ9P2K1 1620 aa13.05□□□□□ -0.32
HMGB1-207ENST00000468384 CCDC180Q9P1Z9 1646 aa12.98□□□□□ -0.33
HMGB1-207ENST00000468384 FXR2P51116 673 aaKnown RBP eCLIP12.91□□□□□ -0.34
HMGB1-207ENST00000468384 REM2Q8IYK8 340 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-207ENST00000468384 AKT1S1Q96B36 256 aa12.87□□□□□ -0.35
HMGB1-207ENST00000468384 BICRAQ9NZM4 1560 aa12.85□□□□□ -0.35
HMGB1-207ENST00000468384 GABBR2O75899 941 aa12.82□□□□□ -0.36
HMGB1-207ENST00000468384 PITPNM1O00562 1244 aa12.79□□□□□ -0.36
HMGB1-207ENST00000468384 APLP2Q06481 763 aa12.78□□□□□ -0.36
HMGB1-207ENST00000468384 UNC13AQ9UPW8 1703 aa12.76□□□□□ -0.37
HMGB1-207ENST00000468384 NPM3O75607 178 aaKnown RBP12.73□□□□□ -0.37
HMGB1-207ENST00000468384 POTEMA6NI47 508 aa12.72□□□□□ -0.37
HMGB1-207ENST00000468384 NCBP3Q53F19 620 aaKnown RBP12.7□□□□□ -0.38
HMGB1-207ENST00000468384 NACADO15069 1562 aa12.69□□□□□ -0.38
HMGB1-207ENST00000468384 ERCC6Q03468 1493 aa12.69□□□□□ -0.38
HMGB1-207ENST00000468384 EIF4G1Q04637 1599 aaKnown RBP12.65□□□□□ -0.38
HMGB1-207ENST00000468384 POLA2Q14181 598 aa12.65□□□□□ -0.38
HMGB1-207ENST00000468384 POTEIP0CG38 1075 aa12.63□□□□□ -0.39
HMGB1-207ENST00000468384 POTEGQ6S5H5 508 aa12.63□□□□□ -0.39
HMGB1-207ENST00000468384 SLC4A2P04920 1241 aa12.61□□□□□ -0.39
HMGB1-207ENST00000468384 C19orf67A6NJJ6 358 aa12.57□□□□□ -0.4
HMGB1-207ENST00000468384 SHROOM4Q9ULL8 1493 aa12.5□□□□□ -0.41
HMGB1-207ENST00000468384 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.45□□□□□ -0.42
HMGB1-207ENST00000468384 HNRNPUL2Q1KMD3 747 aaKnown RBP12.45□□□□□ -0.42
HMGB1-207ENST00000468384 PRKAR2AP13861 404 aaKnown RBP12.41□□□□□ -0.42
HMGB1-207ENST00000468384 OTUD5Q96G74 571 aa12.41□□□□□ -0.42
HMGB1-207ENST00000468384 DCAF8L2P0C7V8 631 aa12.39□□□□□ -0.43
HMGB1-207ENST00000468384 SAMD1Q6SPF0 538 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-207ENST00000468384 OSCARQ8IYS5 282 aa12.38□□□□□ -0.43
HMGB1-207ENST00000468384 SOCS7O14512 581 aa12.34□□□□□ -0.43
HMGB1-207ENST00000468384 PCDH10Q9P2E7 1040 aa12.34□□□□□ -0.43
HMGB1-207ENST00000468384 RIMBP3CA6NJZ7 1639 aa12.31□□□□□ -0.44
HMGB1-207ENST00000468384 RIMBP3BA6NNM3 1639 aa12.31□□□□□ -0.44
HMGB1-207ENST00000468384 RIMBP3Q9UFD9 1639 aa12.31□□□□□ -0.44
HMGB1-207ENST00000468384 LMTK3Q96Q04 1460 aa12.31□□□□□ -0.44
HMGB1-207ENST00000468384 THOC2Q8NI27 1593 aaKnown RBP12.22□□□□□ -0.45
HMGB1-207ENST00000468384 POTEB2H3BUK9 544 aa12.21□□□□□ -0.45
HMGB1-207ENST00000468384 CYB5RLQ6IPT4 315 aa12.2□□□□□ -0.46
HMGB1-207ENST00000468384 BAZ1AQ9NRL2 1556 aaPredicted RBP12.2□□□□□ -0.46
HMGB1-207ENST00000468384 ILDR2Q71H61 639 aa12.16□□□□□ -0.46
HMGB1-207ENST00000468384 FBXO41Q8TF61 875 aa12.15□□□□□ -0.46
HMGB1-207ENST00000468384 ARHGEF11O15085 1522 aa12.14□□□□□ -0.47
HMGB1-207ENST00000468384 LCE2DQ5TA82 110 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-207ENST00000468384 NESP48681 1621 aa12.09□□□□□ -0.47
HMGB1-207ENST00000468384 DCBLD2Q96PD2 775 aa12.07□□□□□ -0.48
HMGB1-207ENST00000468384 CHADLQ6NUI6 762 aa12.06□□□□□ -0.48
HMGB1-207ENST00000468384 ZBTB12Q9Y330 459 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-207ENST00000468384 CLEC11AQ9Y240 323 aa12.02□□□□□ -0.49
HMGB1-207ENST00000468384 MYO15BQ96JP2 1530 aa12.01□□□□□ -0.49
HMGB1-207ENST00000468384 SMARCA2P51531 1590 aa11.99□□□□□ -0.49
HMGB1-207ENST00000468384 KDM4FA0A1W2PPD8 638 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms