RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Srcin1Q9QWI6 1250 aa21.77■■□□□ 1.08
Shh-201ENSMUST00000002708 Hdac5Q9Z2V6 1113 aa21.77■■□□□ 1.08
Shh-201ENSMUST00000002708 Tmf1B9EKI3 1091 aa21.76■■□□□ 1.07
Shh-201ENSMUST00000002708 Plch2A2AP18 1501 aa21.75■■□□□ 1.07
Shh-201ENSMUST00000002708 Slc4a1apE9PX68 744 aa21.75■■□□□ 1.07
Shh-201ENSMUST00000002708 Os9Q8K2C7 672 aa21.75■■□□□ 1.07
Shh-201ENSMUST00000002708 NeflP08551 543 aa21.73■■□□□ 1.07
Shh-201ENSMUST00000002708 Zmym4A2A791 1549 aaKnown RBP21.72■■□□□ 1.07
Shh-201ENSMUST00000002708 Ylpm1Q9R0I7 1386 aaKnown RBP21.72■■□□□ 1.07
Shh-201ENSMUST00000002708 Abca9Q8K449 1623 aa21.72■■□□□ 1.07
Shh-201ENSMUST00000002708 B4galnt3Q6L8S8 986 aa21.71■■□□□ 1.07
Shh-201ENSMUST00000002708 Zfyve16Q80U44 1528 aa21.71■■□□□ 1.07
Shh-201ENSMUST00000002708 Stk24Q99KH8 431 aa21.71■■□□□ 1.07
Shh-201ENSMUST00000002708 Esx1O88933 382 aa21.7■■□□□ 1.07
Shh-201ENSMUST00000002708 PtprtQ99M80 1454 aa21.69■■□□□ 1.06
Shh-201ENSMUST00000002708 Lemd3Q9WU40 921 aa21.69■■□□□ 1.06
Shh-201ENSMUST00000002708 Uggt2E9Q4X2 1504 aa21.69■■□□□ 1.06
Shh-201ENSMUST00000002708 Gm20521D3Z5F7 333 aa21.68■■□□□ 1.06
Shh-201ENSMUST00000002708 Prkrip1Q9CWV6 186 aaKnown RBP21.68■■□□□ 1.06
Shh-201ENSMUST00000002708 Ak9G3UYQ4 1894 aa21.68■■□□□ 1.06
Shh-201ENSMUST00000002708 Nos1Q9Z0J4 1429 aa21.67■■□□□ 1.06
Shh-201ENSMUST00000002708 CrbnQ8C7D2 445 aa21.67■■□□□ 1.06
Shh-201ENSMUST00000002708 Abca6Q8K441 1624 aa21.67■■□□□ 1.06
Shh-201ENSMUST00000002708 Sbno1Q689Z5 1390 aa21.67■■□□□ 1.06
Shh-201ENSMUST00000002708 Ttc21bQ0HA38 1315 aa21.66■■□□□ 1.06
Shh-201ENSMUST00000002708 Tex14Q7M6U3 1450 aa21.66■■□□□ 1.06
Shh-201ENSMUST00000002708 Fndc1E9Q043 1732 aa21.66■■□□□ 1.06
Shh-201ENSMUST00000002708 Ttll13A4Q9F6 804 aa21.66■■□□□ 1.06
Shh-201ENSMUST00000002708 Iqcf3Q9D498 203 aa21.66■■□□□ 1.06
Shh-201ENSMUST00000002708 Gm16486A0A1D5RMD1 1434 aa21.65■■□□□ 1.06
Shh-201ENSMUST00000002708 Fam184bQ0KK56 942 aa21.65■■□□□ 1.06
Shh-201ENSMUST00000002708 Dbr1Q923B1 550 aa21.65■■□□□ 1.06
Shh-201ENSMUST00000002708 Pola1P33609 1465 aa21.64■■□□□ 1.05
Shh-201ENSMUST00000002708 Ppp2r1aQ76MZ3 589 aa21.64■■□□□ 1.05
Shh-201ENSMUST00000002708 ErbinQ80TH2 1402 aa21.63■■□□□ 1.05
Shh-201ENSMUST00000002708 Apbb1Q9QXJ1 710 aa21.62■■□□□ 1.05
Shh-201ENSMUST00000002708 Iqgap3F8VQ29 1632 aa21.62■■□□□ 1.05
Shh-201ENSMUST00000002708 Fan1Q69ZT1 1020 aa21.61■■□□□ 1.05
Shh-201ENSMUST00000002708 AnkarA2RT91 1465 aa21.61■■□□□ 1.05
Shh-201ENSMUST00000002708 Itsn2Q9Z0R6 1659 aa21.6■■□□□ 1.05
Shh-201ENSMUST00000002708 Znf518aB2RRF6 1478 aaKnown RBP21.6■■□□□ 1.05
Shh-201ENSMUST00000002708 Mink1Q9JM52 1308 aa21.59■■□□□ 1.05
Shh-201ENSMUST00000002708 Srpk2O54781 681 aaKnown RBP21.59■■□□□ 1.05
Shh-201ENSMUST00000002708 Cep152A2AUM9 1736 aaKnown RBP21.59■■□□□ 1.05
Shh-201ENSMUST00000002708 Gtf2e1Q9D0D5 440 aa21.59■■□□□ 1.05
Shh-201ENSMUST00000002708 Tmem131lQ3U3D7 1597 aa21.58■■□□□ 1.04
Shh-201ENSMUST00000002708 Usp40Q8BWR4 1235 aa21.58■■□□□ 1.04
Shh-201ENSMUST00000002708 Rab3gap2Q8BMG7 1366 aa21.57■■□□□ 1.04
Shh-201ENSMUST00000002708 Hsp90aa1P07901 733 aaKnown RBP21.57■■□□□ 1.04
Shh-201ENSMUST00000002708 Myo3aQ8K3H5 1613 aa21.57■■□□□ 1.04
Shh-201ENSMUST00000002708 Prex1Q69ZK0 1650 aa21.56■■□□□ 1.04
Shh-201ENSMUST00000002708 Arid4bA2CG63 1314 aaKnown RBP21.55■■□□□ 1.04
Shh-201ENSMUST00000002708 Kif16bB1AVY7 1312 aa21.55■■□□□ 1.04
Shh-201ENSMUST00000002708 Abca8aQ8K442 1620 aa21.55■■□□□ 1.04
Shh-201ENSMUST00000002708 Cdk5rap2Q8K389 1822 aa21.55■■□□□ 1.04
Shh-201ENSMUST00000002708 Kdm5aQ3UXZ9 1690 aa21.54■■□□□ 1.04
Shh-201ENSMUST00000002708 Prdm10Q3UTQ7 1184 aa21.53■■□□□ 1.04
Shh-201ENSMUST00000002708 Kif7B7ZNG0 1348 aa21.53■■□□□ 1.04
Shh-201ENSMUST00000002708 AatkQ80YE4 1365 aa21.52■■□□□ 1.04
Shh-201ENSMUST00000002708 DaxxO35613 739 aa21.51■■□□□ 1.03
Shh-201ENSMUST00000002708 CanxP35564 591 aaKnown RBP21.51■■□□□ 1.03
Shh-201ENSMUST00000002708 Dcaf11Q91VU6 549 aa21.51■■□□□ 1.03
Shh-201ENSMUST00000002708 Ehbp1l1Q99MS7 1716 aa21.5■■□□□ 1.03
Shh-201ENSMUST00000002708 TnikP83510 1323 aa21.49■■□□□ 1.03
Shh-201ENSMUST00000002708 Neurod2Q62414 383 aa21.48■■□□□ 1.03
Shh-201ENSMUST00000002708 Nlrp6Q91WS2 869 aa21.48■■□□□ 1.03
Shh-201ENSMUST00000002708 Col17a1Q07563 1470 aa21.48■■□□□ 1.03
Shh-201ENSMUST00000002708 Nkx1-2P42580 305 aa21.48■■□□□ 1.03
Shh-201ENSMUST00000002708 OvosQ3UU35 1456 aa21.48■■□□□ 1.03
Shh-201ENSMUST00000002708 Rims1Q99NE5 1463 aa21.48■■□□□ 1.03
Shh-201ENSMUST00000002708 Cnga1P29974 684 aa21.47■■□□□ 1.03
Shh-201ENSMUST00000002708 Prdm2A2A7B5 1709 aaKnown RBP21.47■■□□□ 1.03
Shh-201ENSMUST00000002708 Topbp1Q6ZQF0 1515 aa21.46■■□□□ 1.03
Shh-201ENSMUST00000002708 Nphp4P59240 1425 aa21.46■■□□□ 1.03
Shh-201ENSMUST00000002708 Sart3Q9JLI8 962 aaKnown RBP21.46■■□□□ 1.03
Shh-201ENSMUST00000002708 Adgrb3Q80ZF8 1522 aa21.46■■□□□ 1.03
Shh-201ENSMUST00000002708 Stard8Q8K031 1019 aa21.45■■□□□ 1.02
Shh-201ENSMUST00000002708 Gli2Q0VGT2 1544 aa21.45■■□□□ 1.02
Shh-201ENSMUST00000002708 Atf7ipQ7TT18 1306 aa21.45■■□□□ 1.02
Shh-201ENSMUST00000002708 Ptch1Q61115 1434 aa21.44■■□□□ 1.02
Shh-201ENSMUST00000002708 Puf60Q3UEB3 564 aaKnown RBP21.44■■□□□ 1.02
Shh-201ENSMUST00000002708 Kdm2bQ6P1G2 1309 aa21.44■■□□□ 1.02
Shh-201ENSMUST00000002708 Clasp1Q80TV8 1535 aaKnown RBP21.43■■□□□ 1.02
Shh-201ENSMUST00000002708 4933416C03RikQ3V063 378 aa21.43■■□□□ 1.02
Shh-201ENSMUST00000002708 Rwdd1Q9CQK7 243 aa21.42■■□□□ 1.02
Shh-201ENSMUST00000002708 Chmp5Q9D7S9 219 aa21.42■■□□□ 1.02
Shh-201ENSMUST00000002708 Sipa1l1Q8C0T5 1782 aa21.42■■□□□ 1.02
Shh-201ENSMUST00000002708 Speer4f1Q9D5Q6 258 aa21.42■■□□□ 1.02
Shh-201ENSMUST00000002708 Trpm1Q2TV84 1622 aa21.4■■□□□ 1.02
Shh-201ENSMUST00000002708 Gtf3c3Q3TMP1 882 aa21.39■■□□□ 1.02
Shh-201ENSMUST00000002708 Myom1Q62234 1667 aaKnown RBP21.39■■□□□ 1.01
Shh-201ENSMUST00000002708 Myom2Q14BI5 1463 aa21.38■■□□□ 1.01
Shh-201ENSMUST00000002708 DnmbpQ6TXD4 1580 aa21.37■■□□□ 1.01
Shh-201ENSMUST00000002708 Efcab6Q6P1E8 1516 aa21.37■■□□□ 1.01
Shh-201ENSMUST00000002708 Stag3O70576 1240 aa21.37■■□□□ 1.01
Shh-201ENSMUST00000002708 EspnQ9ET47 871 aa21.37■■□□□ 1.01
Shh-201ENSMUST00000002708 Depdc5P61460 1591 aa21.37■■□□□ 1.01
Shh-201ENSMUST00000002708 Usp19Q3UJD6 1360 aa21.37■■□□□ 1.01
Shh-201ENSMUST00000002708 Ttc41Q692V3 1318 aa21.36■■□□□ 1.01
Shh-201ENSMUST00000002708 Gas2l2Q5SSG4 860 aa21.36■■□□□ 1.01
Retrieved 100 of 22,080 RNA–protein pairs in 8.5 ms