RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	YLR152C	P54072	576 aa		3.13	□□□□□ -1.91
SSL1	YLR005W	SNZ1	Q03148	297 aa		3.13	□□□□□ -1.91
SSL1	YLR005W	HOT1	Q03213	719 aa		3.13	□□□□□ -1.91
SSL1	YLR005W	UPS1	Q05776	175 aa		3.13	□□□□□ -1.91
SSL1	YLR005W	MRX9	Q07349	420 aa	Known RBP	3.13	□□□□□ -1.91
SSL1	YLR005W	BBP1	Q12365	385 aa		3.13	□□□□□ -1.91
SSL1	YLR005W	KIN28	P06242	306 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	ATP10	P18496	279 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	TOM40	P23644	387 aa	Known RBP	3.12	□□□□□ -1.91
SSL1	YLR005W	PUT3	P25502	979 aa	Predicted RBP	3.12	□□□□□ -1.91
SSL1	YLR005W	VPS17	P32913	551 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	DDI1	P40087	428 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	RIO2	P40160	425 aa	Known RBP	3.12	□□□□□ -1.91
SSL1	YLR005W	ERJ5	P43613	295 aa	Predicted RBP	3.12	□□□□□ -1.91
SSL1	YLR005W	YGR016W	P53209	190 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	SAY1	P53324	424 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	YMD8	Q03697	442 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	YMR166C	Q03829	368 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	SMP3	Q04174	516 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	CAC2	Q04199	468 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	YDR114C	Q04597	100 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	TSR2	Q06672	205 aa	Known RBP	3.12	□□□□□ -1.91
SSL1	YLR005W	DTD1	Q07648	150 aa	Known RBP	3.12	□□□□□ -1.91
SSL1	YLR005W	SIR2	P06700	562 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	SNF4	P12904	322 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	IDP1	P21954	428 aa	Known RBP	3.12	□□□□□ -1.91
SSL1	YLR005W	MIG1	P27705	504 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	TIF3	P34167	436 aa	Known RBP	3.12	□□□□□ -1.91
SSL1	YLR005W	MRPL36	P36531	177 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	NOP16	P40007	231 aa	Known RBP	3.12	□□□□□ -1.91
SSL1	YLR005W	YND1	P40009	630 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	MRX5	P47007	382 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	SPG4	Q04438	115 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	YOR029W	Q12243	111 aa		3.12	□□□□□ -1.91
SSL1	YLR005W	RPL24A	P04449	155 aa	Known RBP	3.11	□□□□□ -1.91
SSL1	YLR005W	COX9	P07255	59 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	PET122	P10355	254 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	PMR1	P13586	950 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	FAR1	P21268	830 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	RPL5	P26321	297 aa	Known RBP	3.11	□□□□□ -1.91
SSL1	YLR005W	CBT1	P36038	271 aa	Predicted RBP	3.11	□□□□□ -1.91
SSL1	YLR005W	YKL075C	P36083	450 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	SSH1	P38353	490 aa	Known RBP	3.11	□□□□□ -1.91
SSL1	YLR005W	PRS2	P38620	318 aa	Known RBP	3.11	□□□□□ -1.91
SSL1	YLR005W	IMD2	P38697	523 aa	Known RBP	3.11	□□□□□ -1.91
SSL1	YLR005W	MDM31	P38880	579 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	FLO5	P38894	1075 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	YIL024C	P40543	189 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	SNL1	P40548	159 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	TTI2	P47168	421 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	SSN8	P47821	323 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	IMD3	P50095	523 aa	Known RBP	3.11	□□□□□ -1.91
SSL1	YLR005W	YMR087W	Q04299	284 aa		3.11	□□□□□ -1.91
SSL1	YLR005W	CDC28	P00546	298 aa	Known RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	RPL25	P04456	142 aa	Known RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	MATALPHA1	P0CY06	175 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	HMLALPHA1	P0CY07	175 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	MRP1	P10662	321 aa	Known RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	ATG22	P25568	528 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	YCR101C	P25607	182 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	IMP1	P28627	190 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	PDB1	P32473	366 aa	Known RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	ZRT3	P34240	503 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	CPR5	P35176	225 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	ADH5	P38113	351 aa	Known RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	SOP4	P39543	234 aa	Predicted RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	YIP1	P53039	248 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	YGL204C	P53089	101 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	RPL21A	Q02753	160 aa	Known RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	SRL4	Q03085	281 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	YMR099C	Q03161	297 aa	Known RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	VPS71	Q03433	280 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	FIN1	Q03898	291 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	RRP17	Q04031	235 aa	Predicted RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	PEX30	Q06169	523 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	YLR173W	Q06247	608 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	LOT6	Q07923	191 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	YOR186W	Q08560	144 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	RFM1	Q12192	310 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	EAF3	Q12432	401 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	FRE6	Q12473	712 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	RPL21B	Q12672	160 aa	Known RBP	3.1	□□□□□ -1.91
SSL1	YLR005W	ATG40	Q99325	256 aa		3.1	□□□□□ -1.91
SSL1	YLR005W	ADK1	P07170	222 aa	Known RBP	3.09	□□□□□ -1.92
SSL1	YLR005W	ATR1	P13090	542 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	NDC1	P32500	655 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	RCN1	P36054	211 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	PMU1	P36069	295 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	SHE1	P38200	338 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	GDT1	P38301	280 aa	Predicted RBP	3.09	□□□□□ -1.92
SSL1	YLR005W	SDS24	P38314	527 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	RPA43	P46669	326 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	FMP33	P46998	180 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	DUO1	P53168	247 aa	Known RBP	3.09	□□□□□ -1.92
SSL1	YLR005W	PAU12	P53343	120 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	STD1	Q02794	444 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	YLR345W	Q06137	509 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	VAM3	Q12241	283 aa		3.09	□□□□□ -1.92
SSL1	YLR005W	MPD1	Q12404	318 aa	Known RBP	3.09	□□□□□ -1.92
SSL1	YLR005W	HUT1	Q12520	339 aa		3.09	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms