Protein–RNA interactions for Protein: P38353

SSH1, Sec sixty-one protein homolog, yeastyeast

Known RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSH1P38353 NSR1YGR159C 1245 nt17.8■□□□□ 0.44
SSH1P38353 YML009W-BYML009W-B 477 nt17.63■□□□□ 0.41
SSH1P38353 NOP1YDL014W 984 nt17.08■□□□□ 0.32
SSH1P38353 MDJ1YFL016C 1536 nt15.99■□□□□ 0.15
SSH1P38353 YKL036CYKL036C 393 nt15.49■□□□□ 0.07
SSH1P38353 SRX1YKL086W 384 nt14.91□□□□□ -0.02
SSH1P38353 Q0297Q0297 156 nt14.86□□□□□ -0.03
SSH1P38353 YJL027CYJL027C 417 nt14.77□□□□□ -0.05
SSH1P38353 YCR051WYCR051W 669 nt14.1□□□□□ -0.15
SSH1P38353 DBP2YNL112W 1641 nt14.06□□□□□ -0.16
SSH1P38353 SCS3YGL126W 1143 nt13.95□□□□□ -0.18
SSH1P38353 YBR190WYBR190W 312 nt13.76□□□□□ -0.21
SSH1P38353 TRN1tP(UGG)A 72 nt13.63□□□□□ -0.23
SSH1P38353 SUF9tP(UGG)F 72 nt13.63□□□□□ -0.23
SSH1P38353 SUF8tP(UGG)H 72 nt13.63□□□□□ -0.23
SSH1P38353 tP(UGG)LtP(UGG)L 72 nt13.63□□□□□ -0.23
SSH1P38353 SUF7tP(UGG)M 72 nt13.63□□□□□ -0.23
SSH1P38353 tP(UGG)N1tP(UGG)N1 72 nt13.63□□□□□ -0.23
SSH1P38353 tP(UGG)N2tP(UGG)N2 72 nt13.63□□□□□ -0.23
SSH1P38353 tP(UGG)O1tP(UGG)O1 72 nt13.63□□□□□ -0.23
SSH1P38353 SUF11tP(UGG)O2 72 nt13.63□□□□□ -0.23
SSH1P38353 CCC1YLR220W 969 nt13.46□□□□□ -0.25
SSH1P38353 YOL085CYOL085C 342 nt13.42□□□□□ -0.26
SSH1P38353 RTC3YHR087W 336 nt13.41□□□□□ -0.26
SSH1P38353 RPP1BYDL130W 321 nt13.33□□□□□ -0.28
SSH1P38353 PKP1YIL042C 1185 nt13.21□□□□□ -0.29
SSH1P38353 RVS167YDR388W 1449 nt13.2□□□□□ -0.3
SSH1P38353 SSA3YBL075C 1950 nt13.14□□□□□ -0.31
SSH1P38353 SCJ1YMR214W 1134 nt13.03□□□□□ -0.32
SSH1P38353 tP(UGG)O3tP(UGG)O3 72 nt12.8□□□□□ -0.36
SSH1P38353 PET122YER153C 765 nt12.74□□□□□ -0.37
SSH1P38353 PUT4YOR348C 1884 nt12.68□□□□□ -0.38
SSH1P38353 SHR5YOL110W 714 nt12.67□□□□□ -0.38
SSH1P38353 SCR1SCR1 522 nt12.56□□□□□ -0.4
SSH1P38353 URN1YPR152C 1398 nt12.45□□□□□ -0.42
SSH1P38353 ATS1YAL020C 1002 nt12.41□□□□□ -0.42
SSH1P38353 YDJ1YNL064C 1230 nt12.41□□□□□ -0.42
SSH1P38353 ARE1YCR048W 1833 nt12.36□□□□□ -0.43
SSH1P38353 DEP1YAL013W 1218 nt12.35□□□□□ -0.43
SSH1P38353 OPI9YLR338W 858 nt12.35□□□□□ -0.43
SSH1P38353 RRN5YLR141W 1092 nt12.34□□□□□ -0.43
SSH1P38353 SAH1YER043C 1350 nt12.31□□□□□ -0.44
SSH1P38353 RPN10YHR200W 807 nt12.25□□□□□ -0.45
SSH1P38353 POA1YBR022W 534 nt12.24□□□□□ -0.45
SSH1P38353 YHR049C-AYHR049C-A 297 nt12.2□□□□□ -0.46
SSH1P38353 YNL208WYNL208W 600 nt12.17□□□□□ -0.46
SSH1P38353 GAR1YHR089C 618 nt12.13□□□□□ -0.47
SSH1P38353 YER088W-BYER088W-B 147 nt12.11□□□□□ -0.47
SSH1P38353 BSC6YOL137W 1494 nt12.03□□□□□ -0.48
SSH1P38353 RSB1YOR049C 1065 nt12.01□□□□□ -0.49
SSH1P38353 PUN1YLR414C 792 nt12□□□□□ -0.49
SSH1P38353 BUD23YCR047C 828 nt11.88□□□□□ -0.51
SSH1P38353 YJR018WYJR018W 363 nt11.88□□□□□ -0.51
SSH1P38353 PTC2YER089C 1395 nt11.87□□□□□ -0.51
SSH1P38353 NAB2YGL122C 1578 nt11.77□□□□□ -0.53
SSH1P38353 TIR1YER011W 765 nt11.76□□□□□ -0.53
SSH1P38353 SPT5YML010W 3192 nt11.69□□□□□ -0.54
SSH1P38353 SSA1YAL005C 1929 nt11.66□□□□□ -0.54
SSH1P38353 YJR120WYJR120W 351 nt11.62□□□□□ -0.55
SSH1P38353 RPP2BYDR382W 333 nt11.58□□□□□ -0.56
SSH1P38353 FIS1YIL065C 468 nt11.57□□□□□ -0.56
SSH1P38353 DAL1YIR027C 1383 nt11.56□□□□□ -0.56
SSH1P38353 PST2YDR032C 597 nt11.54□□□□□ -0.56
SSH1P38353 INM2YDR287W 879 nt11.51□□□□□ -0.57
SSH1P38353 FPR4YLR449W 1179 nt11.5□□□□□ -0.57
SSH1P38353 PHO4YFR034C 939 nt11.45□□□□□ -0.58
SSH1P38353 FPS1YLL043W 2010 nt11.4□□□□□ -0.58
SSH1P38353 SRB2YHR041C 633 nt11.38□□□□□ -0.59
SSH1P38353 SSA4YER103W 1929 nt11.37□□□□□ -0.59
SSH1P38353 NVJ2YPR091C 2313 nt11.36□□□□□ -0.59
SSH1P38353 YBL100CYBL100C 315 nt11.34□□□□□ -0.59
SSH1P38353 MEP2YNL142W 1500 nt11.34□□□□□ -0.59
SSH1P38353 YPS1YLR120C 1710 nt11.32□□□□□ -0.6
SSH1P38353 PAC11YDR488C 1602 nt11.32□□□□□ -0.6
SSH1P38353 BDH2YAL061W 1254 nt11.3□□□□□ -0.6
SSH1P38353 YDR095CYDR095C 411 nt11.21□□□□□ -0.61
SSH1P38353 YHR165W-AYHR165W-A 312 nt11.2□□□□□ -0.62
SSH1P38353 FUN26YAL022C 1554 nt11.2□□□□□ -0.62
SSH1P38353 WWM1YFL010C 636 nt11.18□□□□□ -0.62
SSH1P38353 LSM3YLR438C-A 270 nt11.13□□□□□ -0.63
SSH1P38353 TRM9YML014W 840 nt11.13□□□□□ -0.63
SSH1P38353 DCW1YKL046C 1350 nt11.13□□□□□ -0.63
SSH1P38353 SHU1YHL006C 453 nt11.11□□□□□ -0.63
SSH1P38353 ALF1YNL148C 765 nt11.09□□□□□ -0.63
SSH1P38353 YGR021WYGR021W 873 nt11.08□□□□□ -0.64
SSH1P38353 CCT6YDR188W 1641 nt11.05□□□□□ -0.64
SSH1P38353 YFL021C-AYFL021C-A 855 nt11.04□□□□□ -0.64
SSH1P38353 HOM6YJR139C 1080 nt11□□□□□ -0.65
SSH1P38353 RPP2AYOL039W 321 nt11□□□□□ -0.65
SSH1P38353 EMI2YDR516C 1503 nt10.99□□□□□ -0.65
SSH1P38353 YAL037C-BYAL037C-B 975 nt10.99□□□□□ -0.65
SSH1P38353 PTP1YDL230W 1008 nt10.97□□□□□ -0.65
SSH1P38353 SUF2tP(AGG)C 72 nt10.97□□□□□ -0.65
SSH1P38353 SUF10tP(AGG)N 72 nt10.97□□□□□ -0.65
SSH1P38353 YMR090WYMR090W 684 nt10.97□□□□□ -0.65
SSH1P38353 BDF1YLR399C 2061 nt10.96□□□□□ -0.65
SSH1P38353 YKL097CYKL097C 411 nt10.94□□□□□ -0.66
SSH1P38353 SIS1YNL007C 1059 nt10.94□□□□□ -0.66
SSH1P38353 YDL221WYDL221W 552 nt10.91□□□□□ -0.66
SSH1P38353 CAC2YML102W 1407 nt10.91□□□□□ -0.66
Retrieved 100 of 7,029 protein–RNA pairs in 13.2 ms