RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	CDC1	P40986	491 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	SHR5	P41912	237 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	YJR111C	P47148	283 aa	Known RBP	4.56	□□□□□ -1.68
CDC4	YFL009W	MGA1	P53050	456 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	MEP3	P53390	489 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	EFM6	P53970	246 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	ASI3	P53983	676 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	AVO2	Q04749	426 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	CRF1	Q04930	467 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	AIM45	Q12480	344 aa	Known RBP	4.56	□□□□□ -1.68
CDC4	YFL009W	YNR034W-A	Q3E841	98 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	PRB1	P09232	635 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	UBI4	P0CG63	381 aa	Known RBP	4.56	□□□□□ -1.68
CDC4	YFL009W	RPL40A	P0CH08	128 aa	Known RBP	4.56	□□□□□ -1.68
CDC4	YFL009W	RPL40B	P0CH09	128 aa	Known RBP	4.56	□□□□□ -1.68
CDC4	YFL009W	ADE1	P27616	306 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	NTH1	P32356	751 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	YKL075C	P36083	450 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	VPS52	P39904	641 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	EMC5	P40540	141 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	CAT5	P41735	233 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	POP1	P41812	875 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	DLD2	P46681	530 aa	Known RBP	4.56	□□□□□ -1.68
CDC4	YFL009W	YGL114W	P53134	725 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	APJ1	P53940	528 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	YMR253C	Q04835	414 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	KEI1	Q06346	221 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	MRX9	Q07349	420 aa	Known RBP	4.56	□□□□□ -1.68
CDC4	YFL009W	LDB18	Q07887	179 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	YLR040C	Q07988	224 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	YDR056C	Q12025	205 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	ADH2	P00331	348 aa	Known RBP	4.55	□□□□□ -1.68
CDC4	YFL009W	CTT1	P06115	562 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.55	□□□□□ -1.68	not detected
CDC4	YFL009W	TRS65	P32893	560 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	SOF1	P33750	489 aa	Known RBP	4.55	□□□□□ -1.68
CDC4	YFL009W	GMH1	P36125	273 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	YCR087C-A	P37263	153 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	URA8	P38627	578 aa	Predicted RBP	4.55	□□□□□ -1.68
CDC4	YFL009W	SDP1	P40479	209 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	MOB2	P43563	287 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	YHC3	P47040	408 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	PET130	P47065	347 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	YHM2	Q04013	314 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	SHH3	Q04487	196 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	YMR321C	Q04898	105 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	ERP1	Q05359	219 aa	Known RBP	4.55	□□□□□ -1.68
CDC4	YFL009W	HRD3	Q05787	833 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	IPK1	Q06667	281 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	YOR365C	Q08844	703 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	PER33	Q12144	273 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	INP53	Q12271	1107 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	TFC7	Q12415	435 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	Q0144	Q9ZZW2	109 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	PAU19	P0CE85	124 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	PAU21	P0CE86	164 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	PAU22	P0CE87	164 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	SEC12	P11655	471 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	PPH21	P23594	369 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	PAU3	P25610	124 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	TCA17	P32613	152 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	SKN1	P33336	771 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	THI80	P35202	319 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	RMA1	P36001	430 aa	Known RBP	4.55	□□□□□ -1.68
CDC4	YFL009W	AIM3	P38266	947 aa	Known RBP	4.55	□□□□□ -1.68
CDC4	YFL009W	YHL041W	P38730	149 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	GET2	P40056	285 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	TES1	P41903	349 aa	Known RBP	4.55	□□□□□ -1.68
CDC4	YFL009W	YGR151C	P53287	111 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	TRM44	Q02648	567 aa	Known RBP	4.55	□□□□□ -1.68
CDC4	YFL009W	MSC3	Q05812	728 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	YOR385W	Q08909	290 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	BSC1	Q12140	328 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	ATG5	Q12380	294 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	YIL134C-A	Q45U18	67 aa		4.55	□□□□□ -1.68
CDC4	YFL009W	CYC7	P00045	113 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	COX5B	P00425	151 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	EXG1	P23776	448 aa	Known RBP	4.54	□□□□□ -1.68
CDC4	YFL009W	SUA7	P29055	345 aa	Predicted RBP	4.54	□□□□□ -1.68
CDC4	YFL009W	MTH1	P35198	433 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	TRS20	P38334	175 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	SPC25	P40014	221 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	FAU1	P40099	211 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	LSB3	P43603	459 aa	Known RBP	4.54	□□□□□ -1.68
CDC4	YFL009W	YJR011C	P47086	261 aa	Predicted RBP	4.54	□□□□□ -1.68
CDC4	YFL009W	IBA57	P47158	497 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	MRX6	P48564	524 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	CTR3	Q06686	241 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	YJR112W-A	Q3E743	109 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	PDA1	P16387	420 aa	Known RBP	4.54	□□□□□ -1.68
CDC4	YFL009W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
CDC4	YFL009W	MSN4	P33749	630 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	FIG1	P38224	298 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	PTH1	P38876	190 aa	Known RBP	4.54	□□□□□ -1.68
CDC4	YFL009W	POP2	P39008	433 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	PMT6	P42934	759 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	OST3	P48439	350 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	YDR366C	P87287	132 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	RIM13	Q03792	727 aa		4.54	□□□□□ -1.68
CDC4	YFL009W	CRT10	Q08226	957 aa		4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 74.8 ms