Protein–RNA interactions for Protein: P0CH09

RPL40B, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40BP0CH09 YML009W-BYML009W-B 477 nt19.74■□□□□ 0.75
RPL40BP0CH09 NOP1YDL014W 984 nt19.53■□□□□ 0.72
RPL40BP0CH09 NSR1YGR159C 1245 nt18.86■□□□□ 0.61
RPL40BP0CH09 YKL036CYKL036C 393 nt18.8■□□□□ 0.6
RPL40BP0CH09 YJL027CYJL027C 417 nt17.71■□□□□ 0.43
RPL40BP0CH09 SCS3YGL126W 1143 nt17.52■□□□□ 0.4
RPL40BP0CH09 Q0297Q0297 156 nt17.34■□□□□ 0.37
RPL40BP0CH09 SRX1YKL086W 384 nt17.05■□□□□ 0.32
RPL40BP0CH09 SCJ1YMR214W 1134 nt16.59■□□□□ 0.25
RPL40BP0CH09 YCR051WYCR051W 669 nt16.26■□□□□ 0.19
RPL40BP0CH09 YOL085CYOL085C 342 nt16.23■□□□□ 0.19
RPL40BP0CH09 MDJ1YFL016C 1536 nt15.96■□□□□ 0.15
RPL40BP0CH09 PKP1YIL042C 1185 nt15.9■□□□□ 0.14
RPL40BP0CH09 ATS1YAL020C 1002 nt15.9■□□□□ 0.14
RPL40BP0CH09 RPP1BYDL130W 321 nt15.57■□□□□ 0.08
RPL40BP0CH09 RTC3YHR087W 336 nt15.06■□□□□ 0
RPL40BP0CH09 TRN1tP(UGG)A 72 nt14.92□□□□□ -0.02
RPL40BP0CH09 SUF9tP(UGG)F 72 nt14.92□□□□□ -0.02
RPL40BP0CH09 SUF8tP(UGG)H 72 nt14.92□□□□□ -0.02
RPL40BP0CH09 tP(UGG)LtP(UGG)L 72 nt14.92□□□□□ -0.02
RPL40BP0CH09 SUF7tP(UGG)M 72 nt14.92□□□□□ -0.02
RPL40BP0CH09 tP(UGG)N1tP(UGG)N1 72 nt14.92□□□□□ -0.02
RPL40BP0CH09 tP(UGG)N2tP(UGG)N2 72 nt14.92□□□□□ -0.02
RPL40BP0CH09 tP(UGG)O1tP(UGG)O1 72 nt14.92□□□□□ -0.02
RPL40BP0CH09 SUF11tP(UGG)O2 72 nt14.92□□□□□ -0.02
RPL40BP0CH09 SCR1SCR1 522 nt14.88□□□□□ -0.03
RPL40BP0CH09 CCC1YLR220W 969 nt14.79□□□□□ -0.04
RPL40BP0CH09 PET122YER153C 765 nt14.78□□□□□ -0.04
RPL40BP0CH09 PST2YDR032C 597 nt14.56□□□□□ -0.08
RPL40BP0CH09 YKL097CYKL097C 411 nt14.48□□□□□ -0.09
RPL40BP0CH09 RRN5YLR141W 1092 nt14.43□□□□□ -0.1
RPL40BP0CH09 DBP2YNL112W 1641 nt14.42□□□□□ -0.1
RPL40BP0CH09 RSB1YOR049C 1065 nt14.41□□□□□ -0.1
RPL40BP0CH09 tP(UGG)O3tP(UGG)O3 72 nt14.39□□□□□ -0.11
RPL40BP0CH09 YER088W-BYER088W-B 147 nt14.15□□□□□ -0.14
RPL40BP0CH09 YDJ1YNL064C 1230 nt13.92□□□□□ -0.18
RPL40BP0CH09 RVS167YDR388W 1449 nt13.83□□□□□ -0.2
RPL40BP0CH09 SHU1YHL006C 453 nt13.78□□□□□ -0.2
RPL40BP0CH09 YOR139CYOR139C 393 nt13.7□□□□□ -0.22
RPL40BP0CH09 SHR5YOL110W 714 nt13.52□□□□□ -0.25
RPL40BP0CH09 GAR1YHR089C 618 nt13.48□□□□□ -0.25
RPL40BP0CH09 NPL3YDR432W 1245 nt13.45□□□□□ -0.26
RPL40BP0CH09 YBR190WYBR190W 312 nt13.38□□□□□ -0.27
RPL40BP0CH09 YAL037C-BYAL037C-B 975 nt13.3□□□□□ -0.28
RPL40BP0CH09 BSC6YOL137W 1494 nt13.22□□□□□ -0.29
RPL40BP0CH09 SSA3YBL075C 1950 nt13.2□□□□□ -0.3
RPL40BP0CH09 tM(CAU)CtM(CAU)C 72 nt13.11□□□□□ -0.31
RPL40BP0CH09 IMT4tM(CAU)E 72 nt13.11□□□□□ -0.31
RPL40BP0CH09 IMT3tM(CAU)J3 72 nt13.11□□□□□ -0.31
RPL40BP0CH09 IMT1tM(CAU)O1 72 nt13.11□□□□□ -0.31
RPL40BP0CH09 IMT2tM(CAU)P 72 nt13.11□□□□□ -0.31
RPL40BP0CH09 TIR1YER011W 765 nt12.99□□□□□ -0.33
RPL40BP0CH09 MOT3YMR070W 1473 nt12.97□□□□□ -0.33
RPL40BP0CH09 YOL037CYOL037C 354 nt12.96□□□□□ -0.33
RPL40BP0CH09 RPN10YHR200W 807 nt12.95□□□□□ -0.34
RPL40BP0CH09 DEP1YAL013W 1218 nt12.85□□□□□ -0.35
RPL40BP0CH09 MNP1YGL068W 585 nt12.81□□□□□ -0.36
RPL40BP0CH09 YGR021WYGR021W 873 nt12.77□□□□□ -0.37
RPL40BP0CH09 MRPL8YJL063C 717 nt12.76□□□□□ -0.37
RPL40BP0CH09 YNL208WYNL208W 600 nt12.75□□□□□ -0.37
RPL40BP0CH09 HOM6YJR139C 1080 nt12.73□□□□□ -0.37
RPL40BP0CH09 PUS2YGL063W 1113 nt12.71□□□□□ -0.37
RPL40BP0CH09 UBX6YJL048C 1191 nt12.65□□□□□ -0.38
RPL40BP0CH09 SSA1YAL005C 1929 nt12.63□□□□□ -0.39
RPL40BP0CH09 URN1YPR152C 1398 nt12.61□□□□□ -0.39
RPL40BP0CH09 RKM5YLR137W 1104 nt12.56□□□□□ -0.4
RPL40BP0CH09 WWM1YFL010C 636 nt12.55□□□□□ -0.4
RPL40BP0CH09 SRB2YHR041C 633 nt12.55□□□□□ -0.4
RPL40BP0CH09 YLR281CYLR281C 468 nt12.54□□□□□ -0.4
RPL40BP0CH09 PUT4YOR348C 1884 nt12.51□□□□□ -0.41
RPL40BP0CH09 ADO1YJR105W 1023 nt12.51□□□□□ -0.41
RPL40BP0CH09 FMP45YDL222C 930 nt12.41□□□□□ -0.42
RPL40BP0CH09 WHI5YOR083W 888 nt12.38□□□□□ -0.43
RPL40BP0CH09 YFL021C-AYFL021C-A 855 nt12.35□□□□□ -0.43
RPL40BP0CH09 YCH1YGR203W 447 nt12.34□□□□□ -0.43
RPL40BP0CH09 YEL076C-AYEL076C-A 651 nt12.33□□□□□ -0.44
RPL40BP0CH09 YEL076CYEL076C 651 nt12.33□□□□□ -0.44
RPL40BP0CH09 YLR464WYLR464W 651 nt12.33□□□□□ -0.44
RPL40BP0CH09 OPI9YLR338W 858 nt12.25□□□□□ -0.45
RPL40BP0CH09 DSK2YMR276W 1122 nt12.24□□□□□ -0.45
RPL40BP0CH09 YPR011CYPR011C 981 nt12.22□□□□□ -0.45
RPL40BP0CH09 YFL015W-AYFL015W-A 318 nt12.21□□□□□ -0.45
RPL40BP0CH09 YLR236CYLR236C 324 nt12.15□□□□□ -0.46
RPL40BP0CH09 IMP2'YIL154C 1041 nt12.14□□□□□ -0.47
RPL40BP0CH09 RPP2BYDR382W 333 nt12.11□□□□□ -0.47
RPL40BP0CH09 SIS1YNL007C 1059 nt12.11□□□□□ -0.47
RPL40BP0CH09 ARE1YCR048W 1833 nt12.1□□□□□ -0.47
RPL40BP0CH09 YDR094WYDR094W 336 nt12.1□□□□□ -0.47
RPL40BP0CH09 RTG1YOL067C 534 nt12.1□□□□□ -0.47
RPL40BP0CH09 YJR018WYJR018W 363 nt12.09□□□□□ -0.47
RPL40BP0CH09 POA1YBR022W 534 nt12.05□□□□□ -0.48
RPL40BP0CH09 YJR120WYJR120W 351 nt12.04□□□□□ -0.48
RPL40BP0CH09 SPP1YPL138C 1062 nt11.99□□□□□ -0.49
RPL40BP0CH09 SBA1YKL117W 651 nt11.98□□□□□ -0.49
RPL40BP0CH09 BDH2YAL061W 1254 nt11.98□□□□□ -0.49
RPL40BP0CH09 LSM3YLR438C-A 270 nt11.98□□□□□ -0.49
RPL40BP0CH09 YHR049C-AYHR049C-A 297 nt11.96□□□□□ -0.49
RPL40BP0CH09 SAH1YER043C 1350 nt11.94□□□□□ -0.5
RPL40BP0CH09 PUN1YLR414C 792 nt11.93□□□□□ -0.5
RPL40BP0CH09 HUA1YGR268C 597 nt11.92□□□□□ -0.5
Retrieved 100 of 7,029 protein–RNA pairs in 12.4 ms