Protein–RNA interactions for Protein: P0CG63

UBI4, Polyubiquitin, yeastyeast

Known RBP Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBI4P0CG63 NSR1YGR159C 1245 nt16.66■□□□□ 0.26
UBI4P0CG63 YML009W-BYML009W-B 477 nt16.23■□□□□ 0.19
UBI4P0CG63 NOP1YDL014W 984 nt15.55■□□□□ 0.08
UBI4P0CG63 MDJ1YFL016C 1536 nt15.36■□□□□ 0.05
UBI4P0CG63 YJL027CYJL027C 417 nt14.13□□□□□ -0.15
UBI4P0CG63 YKL036CYKL036C 393 nt13.75□□□□□ -0.21
UBI4P0CG63 SRX1YKL086W 384 nt13.56□□□□□ -0.24
UBI4P0CG63 Q0297Q0297 156 nt13.39□□□□□ -0.27
UBI4P0CG63 DBP2YNL112W 1641 nt13.33□□□□□ -0.28
UBI4P0CG63 YBR190WYBR190W 312 nt13.27□□□□□ -0.29
UBI4P0CG63 SSA3YBL075C 1950 nt13.2□□□□□ -0.3
UBI4P0CG63 RTC3YHR087W 336 nt12.93□□□□□ -0.34
UBI4P0CG63 YCR051WYCR051W 669 nt12.81□□□□□ -0.36
UBI4P0CG63 TRN1tP(UGG)A 72 nt12.64□□□□□ -0.39
UBI4P0CG63 SUF9tP(UGG)F 72 nt12.64□□□□□ -0.39
UBI4P0CG63 SUF8tP(UGG)H 72 nt12.64□□□□□ -0.39
UBI4P0CG63 tP(UGG)LtP(UGG)L 72 nt12.64□□□□□ -0.39
UBI4P0CG63 SUF7tP(UGG)M 72 nt12.64□□□□□ -0.39
UBI4P0CG63 tP(UGG)N1tP(UGG)N1 72 nt12.64□□□□□ -0.39
UBI4P0CG63 tP(UGG)N2tP(UGG)N2 72 nt12.64□□□□□ -0.39
UBI4P0CG63 tP(UGG)O1tP(UGG)O1 72 nt12.64□□□□□ -0.39
UBI4P0CG63 SUF11tP(UGG)O2 72 nt12.64□□□□□ -0.39
UBI4P0CG63 PUT4YOR348C 1884 nt12.51□□□□□ -0.41
UBI4P0CG63 CCC1YLR220W 969 nt12.46□□□□□ -0.41
UBI4P0CG63 RVS167YDR388W 1449 nt12.45□□□□□ -0.42
UBI4P0CG63 SCJ1YMR214W 1134 nt12.22□□□□□ -0.45
UBI4P0CG63 SCS3YGL126W 1143 nt12.19□□□□□ -0.46
UBI4P0CG63 ARE1YCR048W 1833 nt12.1□□□□□ -0.47
UBI4P0CG63 POA1YBR022W 534 nt12.05□□□□□ -0.48
UBI4P0CG63 RPP1BYDL130W 321 nt12.01□□□□□ -0.49
UBI4P0CG63 YHR049C-AYHR049C-A 297 nt11.96□□□□□ -0.49
UBI4P0CG63 BSC6YOL137W 1494 nt11.93□□□□□ -0.5
UBI4P0CG63 YOL085CYOL085C 342 nt11.91□□□□□ -0.5
UBI4P0CG63 SAH1YER043C 1350 nt11.91□□□□□ -0.5
UBI4P0CG63 URN1YPR152C 1398 nt11.89□□□□□ -0.51
UBI4P0CG63 SHR5YOL110W 714 nt11.85□□□□□ -0.51
UBI4P0CG63 OPI9YLR338W 858 nt11.84□□□□□ -0.51
UBI4P0CG63 SPT5YML010W 3192 nt11.83□□□□□ -0.52
UBI4P0CG63 PKP1YIL042C 1185 nt11.79□□□□□ -0.52
UBI4P0CG63 tP(UGG)O3tP(UGG)O3 72 nt11.73□□□□□ -0.53
UBI4P0CG63 SSA4YER103W 1929 nt11.72□□□□□ -0.53
UBI4P0CG63 DEP1YAL013W 1218 nt11.68□□□□□ -0.54
UBI4P0CG63 BUD23YCR047C 828 nt11.62□□□□□ -0.55
UBI4P0CG63 RPN10YHR200W 807 nt11.61□□□□□ -0.55
UBI4P0CG63 PET122YER153C 765 nt11.54□□□□□ -0.56
UBI4P0CG63 PUN1YLR414C 792 nt11.51□□□□□ -0.57
UBI4P0CG63 YNL208WYNL208W 600 nt11.47□□□□□ -0.57
UBI4P0CG63 PTC2YER089C 1395 nt11.45□□□□□ -0.58
UBI4P0CG63 NAB2YGL122C 1578 nt11.41□□□□□ -0.58
UBI4P0CG63 YDJ1YNL064C 1230 nt11.37□□□□□ -0.59
UBI4P0CG63 BDF1YLR399C 2061 nt11.32□□□□□ -0.6
UBI4P0CG63 YJR018WYJR018W 363 nt11.3□□□□□ -0.6
UBI4P0CG63 SCR1SCR1 522 nt11.28□□□□□ -0.6
UBI4P0CG63 MEP2YNL142W 1500 nt11.27□□□□□ -0.61
UBI4P0CG63 GAR1YHR089C 618 nt11.19□□□□□ -0.62
UBI4P0CG63 FIS1YIL065C 468 nt11.19□□□□□ -0.62
UBI4P0CG63 TAT1YBR069C 1860 nt11.19□□□□□ -0.62
UBI4P0CG63 DAL1YIR027C 1383 nt11.14□□□□□ -0.63
UBI4P0CG63 RRN5YLR141W 1092 nt11.12□□□□□ -0.63
UBI4P0CG63 FPR4YLR449W 1179 nt11.08□□□□□ -0.64
UBI4P0CG63 DCW1YKL046C 1350 nt11.05□□□□□ -0.64
UBI4P0CG63 YPS1YLR120C 1710 nt11.04□□□□□ -0.64
UBI4P0CG63 PHO4YFR034C 939 nt11.03□□□□□ -0.64
UBI4P0CG63 INM2YDR287W 879 nt10.98□□□□□ -0.65
UBI4P0CG63 YJR120WYJR120W 351 nt10.98□□□□□ -0.65
UBI4P0CG63 YHR165W-AYHR165W-A 312 nt10.95□□□□□ -0.66
UBI4P0CG63 RPP2BYDR382W 333 nt10.93□□□□□ -0.66
UBI4P0CG63 PAC11YDR488C 1602 nt10.91□□□□□ -0.66
UBI4P0CG63 EMI2YDR516C 1503 nt10.91□□□□□ -0.66
UBI4P0CG63 YER088W-BYER088W-B 147 nt10.91□□□□□ -0.66
UBI4P0CG63 YMR090WYMR090W 684 nt10.91□□□□□ -0.66
UBI4P0CG63 YBR220CYBR220C 1683 nt10.91□□□□□ -0.66
UBI4P0CG63 YDR095CYDR095C 411 nt10.87□□□□□ -0.67
UBI4P0CG63 TIR1YER011W 765 nt10.85□□□□□ -0.67
UBI4P0CG63 SSA1YAL005C 1929 nt10.84□□□□□ -0.67
UBI4P0CG63 YDL221WYDL221W 552 nt10.79□□□□□ -0.68
UBI4P0CG63 YBL100CYBL100C 315 nt10.79□□□□□ -0.68
UBI4P0CG63 SDH1YKL148C 1923 nt10.77□□□□□ -0.69
UBI4P0CG63 RSB1YOR049C 1065 nt10.73□□□□□ -0.69
UBI4P0CG63 ATS1YAL020C 1002 nt10.72□□□□□ -0.69
UBI4P0CG63 CAC2YML102W 1407 nt10.67□□□□□ -0.7
UBI4P0CG63 PCH2YBR186W 1695 nt10.66□□□□□ -0.7
UBI4P0CG63 PTP1YDL230W 1008 nt10.66□□□□□ -0.7
UBI4P0CG63 RPP2AYOL039W 321 nt10.66□□□□□ -0.7
UBI4P0CG63 SEC11YIR022W 504 nt10.64□□□□□ -0.71
UBI4P0CG63 FUN26YAL022C 1554 nt10.62□□□□□ -0.71
UBI4P0CG63 ALF1YNL148C 765 nt10.62□□□□□ -0.71
UBI4P0CG63 GUT2YIL155C 1950 nt10.62□□□□□ -0.71
UBI4P0CG63 SCC4YER147C 1875 nt10.61□□□□□ -0.71
UBI4P0CG63 BDH2YAL061W 1254 nt10.6□□□□□ -0.71
UBI4P0CG63 NVJ2YPR091C 2313 nt10.57□□□□□ -0.72
UBI4P0CG63 IRC15YPL017C 1500 nt10.53□□□□□ -0.72
UBI4P0CG63 SRB2YHR041C 633 nt10.51□□□□□ -0.73
UBI4P0CG63 TRM9YML014W 840 nt10.49□□□□□ -0.73
UBI4P0CG63 GIS3YLR094C 1509 nt10.48□□□□□ -0.73
UBI4P0CG63 SIS1YNL007C 1059 nt10.45□□□□□ -0.74
UBI4P0CG63 CCT6YDR188W 1641 nt10.44□□□□□ -0.74
UBI4P0CG63 YSC84YHR016C 1407 nt10.43□□□□□ -0.74
UBI4P0CG63 PIB2YGL023C 1908 nt10.43□□□□□ -0.74
UBI4P0CG63 SUF2tP(AGG)C 72 nt10.41□□□□□ -0.74
Retrieved 100 of 7,029 protein–RNA pairs in 12.7 ms