Protein–RNA interactions for Protein: Q05787

HRD3, ERAD-associated E3 ubiquitin-protein ligase component HRD3, yeastyeast

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
HRD3Q05787 YML009W-BYML009W-B 477 nt21.41■■□□□ 1.02
HRD3Q05787 NSR1YGR159C 1245 nt21.14■□□□□ 0.97
HRD3Q05787 NOP1YDL014W 984 nt20.83■□□□□ 0.93
HRD3Q05787 YKL036CYKL036C 393 nt19.37■□□□□ 0.69
HRD3Q05787 MDJ1YFL016C 1536 nt18.69■□□□□ 0.58
HRD3Q05787 Q0297Q0297 156 nt18.3■□□□□ 0.52
HRD3Q05787 SRX1YKL086W 384 nt18.23■□□□□ 0.51
HRD3Q05787 YJL027CYJL027C 417 nt18.11■□□□□ 0.49
HRD3Q05787 SCS3YGL126W 1143 nt17.72■□□□□ 0.43
HRD3Q05787 YCR051WYCR051W 669 nt17.31■□□□□ 0.36
HRD3Q05787 YOL085CYOL085C 342 nt16.78■□□□□ 0.28
HRD3Q05787 DBP2YNL112W 1641 nt16.59■□□□□ 0.25
HRD3Q05787 PKP1YIL042C 1185 nt16.53■□□□□ 0.24
HRD3Q05787 RPP1BYDL130W 321 nt16.42■□□□□ 0.22
HRD3Q05787 TRN1tP(UGG)A 72 nt16.42■□□□□ 0.22
HRD3Q05787 SUF9tP(UGG)F 72 nt16.42■□□□□ 0.22
HRD3Q05787 SUF8tP(UGG)H 72 nt16.42■□□□□ 0.22
HRD3Q05787 tP(UGG)LtP(UGG)L 72 nt16.42■□□□□ 0.22
HRD3Q05787 SUF7tP(UGG)M 72 nt16.42■□□□□ 0.22
HRD3Q05787 tP(UGG)N1tP(UGG)N1 72 nt16.42■□□□□ 0.22
HRD3Q05787 tP(UGG)N2tP(UGG)N2 72 nt16.42■□□□□ 0.22
HRD3Q05787 tP(UGG)O1tP(UGG)O1 72 nt16.42■□□□□ 0.22
HRD3Q05787 SUF11tP(UGG)O2 72 nt16.42■□□□□ 0.22
HRD3Q05787 CCC1YLR220W 969 nt16.26■□□□□ 0.19
HRD3Q05787 YBR190WYBR190W 312 nt15.87■□□□□ 0.13
HRD3Q05787 ATS1YAL020C 1002 nt15.86■□□□□ 0.13
HRD3Q05787 SCJ1YMR214W 1134 nt15.81■□□□□ 0.12
HRD3Q05787 PET122YER153C 765 nt15.7■□□□□ 0.1
HRD3Q05787 RVS167YDR388W 1449 nt15.6■□□□□ 0.09
HRD3Q05787 tP(UGG)O3tP(UGG)O3 72 nt15.56■□□□□ 0.08
HRD3Q05787 RTC3YHR087W 336 nt15.54■□□□□ 0.08
HRD3Q05787 SCR1SCR1 522 nt15.53■□□□□ 0.08
HRD3Q05787 RRN5YLR141W 1092 nt15.24■□□□□ 0.03
HRD3Q05787 SHR5YOL110W 714 nt15.1■□□□□ 0.01
HRD3Q05787 YDJ1YNL064C 1230 nt15.05■□□□□ -0
HRD3Q05787 RSB1YOR049C 1065 nt14.97□□□□□ -0.01
HRD3Q05787 YER088W-BYER088W-B 147 nt14.95□□□□□ -0.02
HRD3Q05787 GAR1YHR089C 618 nt14.71□□□□□ -0.05
HRD3Q05787 PST2YDR032C 597 nt14.67□□□□□ -0.06
HRD3Q05787 DEP1YAL013W 1218 nt14.64□□□□□ -0.07
HRD3Q05787 URN1YPR152C 1398 nt14.6□□□□□ -0.07
HRD3Q05787 YNL208WYNL208W 600 nt14.4□□□□□ -0.1
HRD3Q05787 RPN10YHR200W 807 nt14.39□□□□□ -0.11
HRD3Q05787 OPI9YLR338W 858 nt14.35□□□□□ -0.11
HRD3Q05787 PUT4YOR348C 1884 nt14.33□□□□□ -0.12
HRD3Q05787 SAH1YER043C 1350 nt14.24□□□□□ -0.13
HRD3Q05787 TIR1YER011W 765 nt14.2□□□□□ -0.14
HRD3Q05787 YKL097CYKL097C 411 nt14.16□□□□□ -0.14
HRD3Q05787 ARE1YCR048W 1833 nt14.12□□□□□ -0.15
HRD3Q05787 SHU1YHL006C 453 nt14.06□□□□□ -0.16
HRD3Q05787 SSA1YAL005C 1929 nt14.02□□□□□ -0.16
HRD3Q05787 YHR049C-AYHR049C-A 297 nt13.94□□□□□ -0.18
HRD3Q05787 PUN1YLR414C 792 nt13.93□□□□□ -0.18
HRD3Q05787 YJR018WYJR018W 363 nt13.92□□□□□ -0.18
HRD3Q05787 POA1YBR022W 534 nt13.89□□□□□ -0.19
HRD3Q05787 SRB2YHR041C 633 nt13.85□□□□□ -0.19
HRD3Q05787 YAL037C-BYAL037C-B 975 nt13.81□□□□□ -0.2
HRD3Q05787 YJR120WYJR120W 351 nt13.79□□□□□ -0.2
HRD3Q05787 PTC2YER089C 1395 nt13.75□□□□□ -0.21
HRD3Q05787 RPP2BYDR382W 333 nt13.66□□□□□ -0.22
HRD3Q05787 BUD23YCR047C 828 nt13.62□□□□□ -0.23
HRD3Q05787 WWM1YFL010C 636 nt13.62□□□□□ -0.23
HRD3Q05787 YOR139CYOR139C 393 nt13.59□□□□□ -0.23
HRD3Q05787 BSC6YOL137W 1494 nt13.57□□□□□ -0.24
HRD3Q05787 YGR021WYGR021W 873 nt13.55□□□□□ -0.24
HRD3Q05787 NAB2YGL122C 1578 nt13.54□□□□□ -0.24
HRD3Q05787 HOM6YJR139C 1080 nt13.53□□□□□ -0.24
HRD3Q05787 MNP1YGL068W 585 nt13.51□□□□□ -0.25
HRD3Q05787 BDH2YAL061W 1254 nt13.43□□□□□ -0.26
HRD3Q05787 SSA3YBL075C 1950 nt13.43□□□□□ -0.26
HRD3Q05787 NPL3YDR432W 1245 nt13.42□□□□□ -0.26
HRD3Q05787 FIS1YIL065C 468 nt13.41□□□□□ -0.26
HRD3Q05787 INM2YDR287W 879 nt13.4□□□□□ -0.26
HRD3Q05787 DAL1YIR027C 1383 nt13.39□□□□□ -0.27
HRD3Q05787 FPR4YLR449W 1179 nt13.38□□□□□ -0.27
HRD3Q05787 YFL021C-AYFL021C-A 855 nt13.37□□□□□ -0.27
HRD3Q05787 RKM5YLR137W 1104 nt13.33□□□□□ -0.28
HRD3Q05787 YBL100CYBL100C 315 nt13.32□□□□□ -0.28
HRD3Q05787 YOL037CYOL037C 354 nt13.3□□□□□ -0.28
HRD3Q05787 PHO4YFR034C 939 nt13.28□□□□□ -0.28
HRD3Q05787 LSM3YLR438C-A 270 nt13.27□□□□□ -0.29
HRD3Q05787 FUN26YAL022C 1554 nt13.16□□□□□ -0.3
HRD3Q05787 TRM9YML014W 840 nt13.14□□□□□ -0.31
HRD3Q05787 tM(CAU)CtM(CAU)C 72 nt13.04□□□□□ -0.32
HRD3Q05787 IMT4tM(CAU)E 72 nt13.04□□□□□ -0.32
HRD3Q05787 IMT3tM(CAU)J3 72 nt13.04□□□□□ -0.32
HRD3Q05787 IMT1tM(CAU)O1 72 nt13.04□□□□□ -0.32
HRD3Q05787 IMT2tM(CAU)P 72 nt13.04□□□□□ -0.32
HRD3Q05787 CCT6YDR188W 1641 nt13.02□□□□□ -0.33
HRD3Q05787 YLR281CYLR281C 468 nt12.99□□□□□ -0.33
HRD3Q05787 YPS1YLR120C 1710 nt12.96□□□□□ -0.33
HRD3Q05787 ALF1YNL148C 765 nt12.93□□□□□ -0.34
HRD3Q05787 WHI5YOR083W 888 nt12.93□□□□□ -0.34
HRD3Q05787 YDR095CYDR095C 411 nt12.91□□□□□ -0.34
HRD3Q05787 PUS2YGL063W 1113 nt12.91□□□□□ -0.34
HRD3Q05787 SUF2tP(AGG)C 72 nt12.87□□□□□ -0.35
HRD3Q05787 SUF10tP(AGG)N 72 nt12.87□□□□□ -0.35
HRD3Q05787 YHR165W-AYHR165W-A 312 nt12.81□□□□□ -0.36
HRD3Q05787 YLR154C-GYLR154C-G 150 nt12.81□□□□□ -0.36
HRD3Q05787 SPT5YML010W 3192 nt12.81□□□□□ -0.36
Retrieved 100 of 7,029 protein–RNA pairs in 8.5 ms