Protein–RNA interactions for Protein: Q04487

SHH3, Mitochondrial inner membrane protein SHH3, yeastyeast

Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHH3Q04487 NSR1YGR159C 1245 nt16.31■□□□□ 0.2
SHH3Q04487 YML009W-BYML009W-B 477 nt16.04■□□□□ 0.16
SHH3Q04487 NOP1YDL014W 984 nt15.49■□□□□ 0.07
SHH3Q04487 MDJ1YFL016C 1536 nt14.78□□□□□ -0.04
SHH3Q04487 YKL036CYKL036C 393 nt13.93□□□□□ -0.18
SHH3Q04487 YJL027CYJL027C 417 nt13.63□□□□□ -0.23
SHH3Q04487 SRX1YKL086W 384 nt13.52□□□□□ -0.25
SHH3Q04487 Q0297Q0297 156 nt13.44□□□□□ -0.26
SHH3Q04487 SSA3YBL075C 1950 nt13.13□□□□□ -0.31
SHH3Q04487 DBP2YNL112W 1641 nt12.95□□□□□ -0.34
SHH3Q04487 YCR051WYCR051W 669 nt12.77□□□□□ -0.37
SHH3Q04487 YBR190WYBR190W 312 nt12.75□□□□□ -0.37
SHH3Q04487 SCS3YGL126W 1143 nt12.47□□□□□ -0.41
SHH3Q04487 TRN1tP(UGG)A 72 nt12.44□□□□□ -0.42
SHH3Q04487 SUF9tP(UGG)F 72 nt12.44□□□□□ -0.42
SHH3Q04487 SUF8tP(UGG)H 72 nt12.44□□□□□ -0.42
SHH3Q04487 tP(UGG)LtP(UGG)L 72 nt12.44□□□□□ -0.42
SHH3Q04487 SUF7tP(UGG)M 72 nt12.44□□□□□ -0.42
SHH3Q04487 tP(UGG)N1tP(UGG)N1 72 nt12.44□□□□□ -0.42
SHH3Q04487 tP(UGG)N2tP(UGG)N2 72 nt12.44□□□□□ -0.42
SHH3Q04487 tP(UGG)O1tP(UGG)O1 72 nt12.44□□□□□ -0.42
SHH3Q04487 SUF11tP(UGG)O2 72 nt12.44□□□□□ -0.42
SHH3Q04487 RTC3YHR087W 336 nt12.4□□□□□ -0.42
SHH3Q04487 CCC1YLR220W 969 nt12.27□□□□□ -0.45
SHH3Q04487 RVS167YDR388W 1449 nt12.11□□□□□ -0.47
SHH3Q04487 YOL085CYOL085C 342 nt12.07□□□□□ -0.48
SHH3Q04487 RPP1BYDL130W 321 nt12.05□□□□□ -0.48
SHH3Q04487 SCJ1YMR214W 1134 nt11.94□□□□□ -0.5
SHH3Q04487 PKP1YIL042C 1185 nt11.89□□□□□ -0.51
SHH3Q04487 PUT4YOR348C 1884 nt11.84□□□□□ -0.51
SHH3Q04487 tP(UGG)O3tP(UGG)O3 72 nt11.64□□□□□ -0.55
SHH3Q04487 SHR5YOL110W 714 nt11.6□□□□□ -0.55
SHH3Q04487 PET122YER153C 765 nt11.54□□□□□ -0.56
SHH3Q04487 ARE1YCR048W 1833 nt11.5□□□□□ -0.57
SHH3Q04487 URN1YPR152C 1398 nt11.49□□□□□ -0.57
SHH3Q04487 POA1YBR022W 534 nt11.42□□□□□ -0.58
SHH3Q04487 SAH1YER043C 1350 nt11.41□□□□□ -0.58
SHH3Q04487 OPI9YLR338W 858 nt11.41□□□□□ -0.58
SHH3Q04487 YHR049C-AYHR049C-A 297 nt11.35□□□□□ -0.59
SHH3Q04487 DEP1YAL013W 1218 nt11.34□□□□□ -0.59
SHH3Q04487 SCR1SCR1 522 nt11.33□□□□□ -0.6
SHH3Q04487 YDJ1YNL064C 1230 nt11.3□□□□□ -0.6
SHH3Q04487 RPN10YHR200W 807 nt11.26□□□□□ -0.61
SHH3Q04487 BSC6YOL137W 1494 nt11.25□□□□□ -0.61
SHH3Q04487 SSA4YER103W 1929 nt11.22□□□□□ -0.61
SHH3Q04487 YNL208WYNL208W 600 nt11.18□□□□□ -0.62
SHH3Q04487 RRN5YLR141W 1092 nt11.16□□□□□ -0.62
SHH3Q04487 SPT5YML010W 3192 nt11.13□□□□□ -0.63
SHH3Q04487 PAC11YDR488C 1602 nt11.09□□□□□ -0.63
SHH3Q04487 PUN1YLR414C 792 nt11.08□□□□□ -0.64
SHH3Q04487 BUD23YCR047C 828 nt11.05□□□□□ -0.64
SHH3Q04487 GAR1YHR089C 618 nt11.05□□□□□ -0.64
SHH3Q04487 ATS1YAL020C 1002 nt11.05□□□□□ -0.64
SHH3Q04487 PTC2YER089C 1395 nt10.98□□□□□ -0.65
SHH3Q04487 NVJ2YPR091C 2313 nt10.96□□□□□ -0.65
SHH3Q04487 YER088W-BYER088W-B 147 nt10.95□□□□□ -0.66
SHH3Q04487 YJR018WYJR018W 363 nt10.94□□□□□ -0.66
SHH3Q04487 BDF1YLR399C 2061 nt10.94□□□□□ -0.66
SHH3Q04487 NAB2YGL122C 1578 nt10.91□□□□□ -0.66
SHH3Q04487 RSB1YOR049C 1065 nt10.82□□□□□ -0.68
SHH3Q04487 TAT1YBR069C 1860 nt10.74□□□□□ -0.69
SHH3Q04487 TIR1YER011W 765 nt10.72□□□□□ -0.69
SHH3Q04487 FIS1YIL065C 468 nt10.71□□□□□ -0.69
SHH3Q04487 DAL1YIR027C 1383 nt10.69□□□□□ -0.7
SHH3Q04487 YJR120WYJR120W 351 nt10.69□□□□□ -0.7
SHH3Q04487 SSA1YAL005C 1929 nt10.65□□□□□ -0.7
SHH3Q04487 FPS1YLL043W 2010 nt10.64□□□□□ -0.71
SHH3Q04487 INM2YDR287W 879 nt10.63□□□□□ -0.71
SHH3Q04487 RPP2BYDR382W 333 nt10.63□□□□□ -0.71
SHH3Q04487 FPR4YLR449W 1179 nt10.63□□□□□ -0.71
SHH3Q04487 MEP2YNL142W 1500 nt10.62□□□□□ -0.71
SHH3Q04487 PHO4YFR034C 939 nt10.59□□□□□ -0.71
SHH3Q04487 YPS1YLR120C 1710 nt10.52□□□□□ -0.73
SHH3Q04487 YBL100CYBL100C 315 nt10.44□□□□□ -0.74
SHH3Q04487 YHR165W-AYHR165W-A 312 nt10.42□□□□□ -0.74
SHH3Q04487 DCW1YKL046C 1350 nt10.41□□□□□ -0.74
SHH3Q04487 YDR095CYDR095C 411 nt10.41□□□□□ -0.74
SHH3Q04487 SRB2YHR041C 633 nt10.38□□□□□ -0.75
SHH3Q04487 BDH2YAL061W 1254 nt10.36□□□□□ -0.75
SHH3Q04487 PST2YDR032C 597 nt10.31□□□□□ -0.76
SHH3Q04487 FUN26YAL022C 1554 nt10.31□□□□□ -0.76
SHH3Q04487 EMI2YDR516C 1503 nt10.29□□□□□ -0.76
SHH3Q04487 YMR090WYMR090W 684 nt10.27□□□□□ -0.77
SHH3Q04487 YBR220CYBR220C 1683 nt10.23□□□□□ -0.77
SHH3Q04487 ALF1YNL148C 765 nt10.23□□□□□ -0.77
SHH3Q04487 TRM9YML014W 840 nt10.22□□□□□ -0.77
SHH3Q04487 YDL221WYDL221W 552 nt10.2□□□□□ -0.78
SHH3Q04487 PTP1YDL230W 1008 nt10.2□□□□□ -0.78
SHH3Q04487 RPP2AYOL039W 321 nt10.2□□□□□ -0.78
SHH3Q04487 WWM1YFL010C 636 nt10.17□□□□□ -0.78
SHH3Q04487 LSM3YLR438C-A 270 nt10.17□□□□□ -0.78
SHH3Q04487 CAC2YML102W 1407 nt10.16□□□□□ -0.78
SHH3Q04487 UME6YDR207C 2511 nt10.15□□□□□ -0.78
SHH3Q04487 CCT6YDR188W 1641 nt10.15□□□□□ -0.78
SHH3Q04487 SDH1YKL148C 1923 nt10.13□□□□□ -0.79
SHH3Q04487 SIS1YNL007C 1059 nt10.1□□□□□ -0.79
SHH3Q04487 SUF2tP(AGG)C 72 nt10.09□□□□□ -0.79
SHH3Q04487 SUF10tP(AGG)N 72 nt10.09□□□□□ -0.79
SHH3Q04487 YFL021C-AYFL021C-A 855 nt10.05□□□□□ -0.8
SHH3Q04487 YGR021WYGR021W 873 nt10.04□□□□□ -0.8
Retrieved 100 of 7,029 protein–RNA pairs in 13.1 ms