Protein–RNA interactions for Protein: Q07988

YLR040C, Cell wall protein YLR040C, yeastyeast

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YLR040CQ07988 NSR1YGR159C 1245 nt18.43■□□□□ 0.54
YLR040CQ07988 YML009W-BYML009W-B 477 nt18.23■□□□□ 0.51
YLR040CQ07988 NOP1YDL014W 984 nt17.6■□□□□ 0.41
YLR040CQ07988 MDJ1YFL016C 1536 nt16.69■□□□□ 0.26
YLR040CQ07988 YKL036CYKL036C 393 nt15.88■□□□□ 0.13
YLR040CQ07988 YJL027CYJL027C 417 nt15.4■□□□□ 0.06
YLR040CQ07988 SRX1YKL086W 384 nt15.35■□□□□ 0.05
YLR040CQ07988 Q0297Q0297 156 nt15.26■□□□□ 0.03
YLR040CQ07988 DBP2YNL112W 1641 nt14.6□□□□□ -0.07
YLR040CQ07988 YCR051WYCR051W 669 nt14.55□□□□□ -0.08
YLR040CQ07988 SCS3YGL126W 1143 nt14.45□□□□□ -0.1
YLR040CQ07988 YBR190WYBR190W 312 nt14.35□□□□□ -0.11
YLR040CQ07988 TRN1tP(UGG)A 72 nt14.08□□□□□ -0.16
YLR040CQ07988 SUF9tP(UGG)F 72 nt14.08□□□□□ -0.16
YLR040CQ07988 SUF8tP(UGG)H 72 nt14.08□□□□□ -0.16
YLR040CQ07988 tP(UGG)LtP(UGG)L 72 nt14.08□□□□□ -0.16
YLR040CQ07988 SUF7tP(UGG)M 72 nt14.08□□□□□ -0.16
YLR040CQ07988 tP(UGG)N1tP(UGG)N1 72 nt14.08□□□□□ -0.16
YLR040CQ07988 tP(UGG)N2tP(UGG)N2 72 nt14.08□□□□□ -0.16
YLR040CQ07988 tP(UGG)O1tP(UGG)O1 72 nt14.08□□□□□ -0.16
YLR040CQ07988 SUF11tP(UGG)O2 72 nt14.08□□□□□ -0.16
YLR040CQ07988 RTC3YHR087W 336 nt14.02□□□□□ -0.17
YLR040CQ07988 CCC1YLR220W 969 nt13.95□□□□□ -0.18
YLR040CQ07988 YOL085CYOL085C 342 nt13.75□□□□□ -0.21
YLR040CQ07988 RPP1BYDL130W 321 nt13.7□□□□□ -0.22
YLR040CQ07988 RVS167YDR388W 1449 nt13.7□□□□□ -0.22
YLR040CQ07988 PKP1YIL042C 1185 nt13.58□□□□□ -0.24
YLR040CQ07988 SCJ1YMR214W 1134 nt13.51□□□□□ -0.25
YLR040CQ07988 PUT4YOR348C 1884 nt13.28□□□□□ -0.28
YLR040CQ07988 SSA3YBL075C 1950 nt13.25□□□□□ -0.29
YLR040CQ07988 tP(UGG)O3tP(UGG)O3 72 nt13.21□□□□□ -0.29
YLR040CQ07988 PET122YER153C 765 nt13.12□□□□□ -0.31
YLR040CQ07988 SHR5YOL110W 714 nt13.12□□□□□ -0.31
YLR040CQ07988 ATS1YAL020C 1002 nt13.02□□□□□ -0.33
YLR040CQ07988 URN1YPR152C 1398 nt12.97□□□□□ -0.33
YLR040CQ07988 ARE1YCR048W 1833 nt12.92□□□□□ -0.34
YLR040CQ07988 SCR1SCR1 522 nt12.91□□□□□ -0.34
YLR040CQ07988 OPI9YLR338W 858 nt12.87□□□□□ -0.35
YLR040CQ07988 SAH1YER043C 1350 nt12.86□□□□□ -0.35
YLR040CQ07988 DEP1YAL013W 1218 nt12.86□□□□□ -0.35
YLR040CQ07988 POA1YBR022W 534 nt12.85□□□□□ -0.35
YLR040CQ07988 YDJ1YNL064C 1230 nt12.79□□□□□ -0.36
YLR040CQ07988 YHR049C-AYHR049C-A 297 nt12.78□□□□□ -0.36
YLR040CQ07988 RPN10YHR200W 807 nt12.73□□□□□ -0.37
YLR040CQ07988 RRN5YLR141W 1092 nt12.7□□□□□ -0.38
YLR040CQ07988 BSC6YOL137W 1494 nt12.64□□□□□ -0.39
YLR040CQ07988 YNL208WYNL208W 600 nt12.63□□□□□ -0.39
YLR040CQ07988 GAR1YHR089C 618 nt12.56□□□□□ -0.4
YLR040CQ07988 PUN1YLR414C 792 nt12.5□□□□□ -0.41
YLR040CQ07988 BUD23YCR047C 828 nt12.47□□□□□ -0.41
YLR040CQ07988 YER088W-BYER088W-B 147 nt12.45□□□□□ -0.42
YLR040CQ07988 PTC2YER089C 1395 nt12.4□□□□□ -0.42
YLR040CQ07988 YJR018WYJR018W 363 nt12.37□□□□□ -0.43
YLR040CQ07988 RSB1YOR049C 1065 nt12.35□□□□□ -0.43
YLR040CQ07988 NAB2YGL122C 1578 nt12.3□□□□□ -0.44
YLR040CQ07988 SPT5YML010W 3192 nt12.27□□□□□ -0.44
YLR040CQ07988 TIR1YER011W 765 nt12.16□□□□□ -0.46
YLR040CQ07988 SSA1YAL005C 1929 nt12.07□□□□□ -0.48
YLR040CQ07988 DAL1YIR027C 1383 nt12.06□□□□□ -0.48
YLR040CQ07988 FIS1YIL065C 468 nt12.06□□□□□ -0.48
YLR040CQ07988 YJR120WYJR120W 351 nt12.05□□□□□ -0.48
YLR040CQ07988 RPP2BYDR382W 333 nt12.04□□□□□ -0.48
YLR040CQ07988 SSA4YER103W 1929 nt12.03□□□□□ -0.48
YLR040CQ07988 FPR4YLR449W 1179 nt12.03□□□□□ -0.48
YLR040CQ07988 PST2YDR032C 597 nt11.98□□□□□ -0.49
YLR040CQ07988 INM2YDR287W 879 nt11.98□□□□□ -0.49
YLR040CQ07988 PHO4YFR034C 939 nt11.94□□□□□ -0.5
YLR040CQ07988 MEP2YNL142W 1500 nt11.91□□□□□ -0.5
YLR040CQ07988 YPS1YLR120C 1710 nt11.83□□□□□ -0.52
YLR040CQ07988 YBL100CYBL100C 315 nt11.8□□□□□ -0.52
YLR040CQ07988 SRB2YHR041C 633 nt11.76□□□□□ -0.53
YLR040CQ07988 YHR165W-AYHR165W-A 312 nt11.74□□□□□ -0.53
YLR040CQ07988 YKL097CYKL097C 411 nt11.74□□□□□ -0.53
YLR040CQ07988 BDH2YAL061W 1254 nt11.72□□□□□ -0.53
YLR040CQ07988 YDR095CYDR095C 411 nt11.7□□□□□ -0.54
YLR040CQ07988 DCW1YKL046C 1350 nt11.69□□□□□ -0.54
YLR040CQ07988 FUN26YAL022C 1554 nt11.64□□□□□ -0.55
YLR040CQ07988 BDF1YLR399C 2061 nt11.58□□□□□ -0.56
YLR040CQ07988 TRM9YML014W 840 nt11.57□□□□□ -0.56
YLR040CQ07988 ALF1YNL148C 765 nt11.57□□□□□ -0.56
YLR040CQ07988 WWM1YFL010C 636 nt11.55□□□□□ -0.56
YLR040CQ07988 EMI2YDR516C 1503 nt11.55□□□□□ -0.56
YLR040CQ07988 YMR090WYMR090W 684 nt11.53□□□□□ -0.56
YLR040CQ07988 LSM3YLR438C-A 270 nt11.5□□□□□ -0.57
YLR040CQ07988 RPP2AYOL039W 321 nt11.49□□□□□ -0.57
YLR040CQ07988 CCT6YDR188W 1641 nt11.46□□□□□ -0.58
YLR040CQ07988 PTP1YDL230W 1008 nt11.45□□□□□ -0.58
YLR040CQ07988 YBR220CYBR220C 1683 nt11.44□□□□□ -0.58
YLR040CQ07988 YDL221WYDL221W 552 nt11.44□□□□□ -0.58
YLR040CQ07988 CAC2YML102W 1407 nt11.43□□□□□ -0.58
YLR040CQ07988 TAT1YBR069C 1860 nt11.42□□□□□ -0.58
YLR040CQ07988 SUF2tP(AGG)C 72 nt11.41□□□□□ -0.58
YLR040CQ07988 SUF10tP(AGG)N 72 nt11.41□□□□□ -0.58
YLR040CQ07988 SHU1YHL006C 453 nt11.41□□□□□ -0.58
YLR040CQ07988 YGR021WYGR021W 873 nt11.4□□□□□ -0.58
YLR040CQ07988 YFL021C-AYFL021C-A 855 nt11.39□□□□□ -0.59
YLR040CQ07988 SIS1YNL007C 1059 nt11.38□□□□□ -0.59
YLR040CQ07988 SDH1YKL148C 1923 nt11.36□□□□□ -0.59
YLR040CQ07988 HOM6YJR139C 1080 nt11.31□□□□□ -0.6
YLR040CQ07988 YAL037C-BYAL037C-B 975 nt11.31□□□□□ -0.6
Retrieved 100 of 7,029 protein–RNA pairs in 13.7 ms