RNA–Protein interactions for RNA: YMR301C

ATM1, Transcript of Mitochondrial inner membrane ATP-binding cassette (ABC) transporter, yeast

Gene ATM1, Length 2,073 nt, Biotype protein coding, Subcellular localisation Mitochondria, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATM1	YMR301C	RTF1	P53064	558 aa		6.32	□□□□□ -1.4
ATM1	YMR301C	BDF1	P35817	686 aa		6.31	□□□□□ -1.4
ATM1	YMR301C	RPN1	P38764	993 aa	Known RBP	6.31	□□□□□ -1.4
ATM1	YMR301C	SPT7	P35177	1332 aa		6.3	□□□□□ -1.4
ATM1	YMR301C	SCT1	P32784	759 aa		6.3	□□□□□ -1.4
ATM1	YMR301C	ALD3	P54114	506 aa		6.3	□□□□□ -1.4
ATM1	YMR301C	HIM1	Q06674	414 aa		6.3	□□□□□ -1.4
ATM1	YMR301C	ATG13	Q06628	738 aa		6.29	□□□□□ -1.4
ATM1	YMR301C	MSB4	Q12317	492 aa		6.29	□□□□□ -1.4
ATM1	YMR301C	SEC3	P33332	1336 aa	Known RBP	6.29	□□□□□ -1.4
ATM1	YMR301C	TSR3	Q12094	313 aa	Known RBP	6.29	□□□□□ -1.4
ATM1	YMR301C	EAF6	P47128	113 aa		6.28	□□□□□ -1.4
ATM1	YMR301C	MGA2	P40578	1113 aa		6.27	□□□□□ -1.41
ATM1	YMR301C	TAP42	Q04372	366 aa		6.27	□□□□□ -1.41
ATM1	YMR301C	YLR271W	Q06152	274 aa		6.27	□□□□□ -1.41
ATM1	YMR301C	OSM1	P21375	501 aa	Known RBP	6.27	□□□□□ -1.41
ATM1	YMR301C	INP54	Q08227	384 aa	Known RBP	6.27	□□□□□ -1.41
ATM1	YMR301C	BUG1	Q12191	341 aa		6.27	□□□□□ -1.41
ATM1	YMR301C	GRX4	P32642	244 aa		6.26	□□□□□ -1.41
ATM1	YMR301C	GRE2	Q12068	342 aa	Known RBP	6.26	□□□□□ -1.41
ATM1	YMR301C	RAD4	P14736	754 aa		6.25	□□□□□ -1.41
ATM1	YMR301C	TOS1	P38288	455 aa		6.25	□□□□□ -1.41
ATM1	YMR301C	DMA2	P53924	522 aa		6.25	□□□□□ -1.41
ATM1	YMR301C	GRX1	P25373	110 aa	Known RBP	6.24	□□□□□ -1.41
ATM1	YMR301C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	6.24	□□□□□ -1.41	not detected
ATM1	YMR301C	SAP155	P43612	1002 aa		6.22	□□□□□ -1.41
ATM1	YMR301C	UTP22	P53254	1237 aa	Predicted RBP	6.22	□□□□□ -1.41
ATM1	YMR301C	HPC2	Q01448	625 aa		6.22	□□□□□ -1.41
ATM1	YMR301C	NUP145	P49687	1317 aa		6.22	□□□□□ -1.41
ATM1	YMR301C	MSN5	P52918	1224 aa		6.22	□□□□□ -1.41
ATM1	YMR301C	YBP2	P53169	641 aa		6.22	□□□□□ -1.41
ATM1	YMR301C	RIX7	Q07844	837 aa	Known RBP	6.22	□□□□□ -1.41
ATM1	YMR301C	TUM1	Q08686	304 aa	Known RBP	6.22	□□□□□ -1.41
ATM1	YMR301C	UTP10	P42945	1769 aa	Known RBP	6.21	□□□□□ -1.41
ATM1	YMR301C	KAR2	P16474	682 aa	Known RBP	6.21	□□□□□ -1.41
ATM1	YMR301C	PDS5	Q04264	1277 aa		6.21	□□□□□ -1.41
ATM1	YMR301C	MHP1	P43638	1398 aa		6.21	□□□□□ -1.42
ATM1	YMR301C	HSP104	P31539	908 aa	Known RBP	6.21	□□□□□ -1.42
ATM1	YMR301C	DSD1	P53095	428 aa		6.21	□□□□□ -1.42
ATM1	YMR301C	CTT1	P06115	562 aa		6.19	□□□□□ -1.42
ATM1	YMR301C	YER156C	P40093	338 aa	Known RBP	6.19	□□□□□ -1.42
ATM1	YMR301C	RRD1	P40454	393 aa	Known RBP	6.18	□□□□□ -1.42
ATM1	YMR301C	KIN4	Q01919	800 aa		6.18	□□□□□ -1.42
ATM1	YMR301C	RSM7	P47150	247 aa		6.18	□□□□□ -1.42
ATM1	YMR301C	CWH41	P53008	833 aa		6.17	□□□□□ -1.42
ATM1	YMR301C	PAP2	P53632	584 aa	Known RBP	6.17	□□□□□ -1.42
ATM1	YMR301C	NST1	P53935	1240 aa		6.17	□□□□□ -1.42
ATM1	YMR301C	CTI6	Q08923	506 aa		6.17	□□□□□ -1.42
ATM1	YMR301C	NYV1	Q12255	253 aa		6.17	□□□□□ -1.42
ATM1	YMR301C	RLF2	Q12495	606 aa		6.17	□□□□□ -1.42
ATM1	YMR301C	TRK1	P12685	1235 aa		6.16	□□□□□ -1.42
ATM1	YMR301C	ERT1	P38140	529 aa		6.16	□□□□□ -1.42
ATM1	YMR301C	AKL1	P38080	1108 aa	Known RBP	6.16	□□□□□ -1.42
ATM1	YMR301C	SQS1	P53866	767 aa	Known RBP	6.16	□□□□□ -1.42
ATM1	YMR301C	CTF4	Q01454	927 aa		6.16	□□□□□ -1.42
ATM1	YMR301C	SPB4	P25808	606 aa	Predicted RBP	6.15	□□□□□ -1.42
ATM1	YMR301C	YKL222C	P35995	705 aa		6.15	□□□□□ -1.42
ATM1	YMR301C	RRT14	P40470	206 aa		6.15	□□□□□ -1.42
ATM1	YMR301C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	6.15	□□□□□ -1.42	not detected
ATM1	YMR301C	PMD1	P32634	1753 aa		6.15	□□□□□ -1.43
ATM1	YMR301C	TEA1	P47988	759 aa		6.14	□□□□□ -1.43
ATM1	YMR301C	RMT2	Q03305	412 aa		6.14	□□□□□ -1.43
ATM1	YMR301C	POL5	P39985	1022 aa	Known RBP	6.14	□□□□□ -1.43
ATM1	YMR301C	ALE1	Q08548	619 aa		6.14	□□□□□ -1.43
ATM1	YMR301C	AOS1	Q06624	347 aa		6.13	□□□□□ -1.43
ATM1	YMR301C	NOP53	Q12080	455 aa	Known RBP	6.13	□□□□□ -1.43
ATM1	YMR301C	KCC4	P25389	1037 aa		6.12	□□□□□ -1.43
ATM1	YMR301C	SMY1	P32364	656 aa	Known RBP	6.11	□□□□□ -1.43
ATM1	YMR301C	SER1	P33330	395 aa	Known RBP	6.11	□□□□□ -1.43
ATM1	YMR301C	NTH2	P35172	780 aa		6.11	□□□□□ -1.43
ATM1	YMR301C	LPD1	P09624	499 aa	Known RBP	6.11	□□□□□ -1.43
ATM1	YMR301C	SSA4	P22202	642 aa	Known RBP	6.11	□□□□□ -1.43
ATM1	YMR301C	CST9	Q06032	482 aa		6.11	□□□□□ -1.43
ATM1	YMR301C	PFF1	P38244	976 aa		6.1	□□□□□ -1.43
ATM1	YMR301C	YGL082W	P53155	381 aa		6.1	□□□□□ -1.43
ATM1	YMR301C	RRP46	P53256	223 aa	Predicted RBP	6.1	□□□□□ -1.43
ATM1	YMR301C	PHM7	Q12252	991 aa		6.1	□□□□□ -1.43
ATM1	YMR301C	TOP1	P04786	769 aa		6.09	□□□□□ -1.43
ATM1	YMR301C	YFR016C	P43597	1233 aa	Known RBP	6.09	□□□□□ -1.43
ATM1	YMR301C	FAS2	P19097	1887 aa	Known RBP	6.09	□□□□□ -1.43
ATM1	YMR301C	CAF20	P12962	161 aa	Known RBP	6.08	□□□□□ -1.44
ATM1	YMR301C	YKR023W	P36119	530 aa	Known RBP	6.08	□□□□□ -1.44
ATM1	YMR301C	MDG1	P53885	366 aa		6.08	□□□□□ -1.44
ATM1	YMR301C	PUS5	Q06244	254 aa		6.08	□□□□□ -1.44
ATM1	YMR301C	ICL1	P28240	557 aa	Predicted RBP	6.07	□□□□□ -1.44
ATM1	YMR301C	SLI15	P38283	698 aa		6.07	□□□□□ -1.44
ATM1	YMR301C	PEX21	P50091	288 aa		6.07	□□□□□ -1.44
ATM1	YMR301C	FPK1	P53739	893 aa		6.07	□□□□□ -1.44
ATM1	YMR301C	RAT1	Q02792	1006 aa	Known RBP	6.07	□□□□□ -1.44
ATM1	YMR301C	ERO1	Q03103	563 aa		6.06	□□□□□ -1.44
ATM1	YMR301C	BDF2	Q07442	638 aa		6.06	□□□□□ -1.44
ATM1	YMR301C	DCD1	P06773	312 aa		6.06	□□□□□ -1.44
ATM1	YMR301C	ARG8	P18544	423 aa		6.06	□□□□□ -1.44
ATM1	YMR301C	HGH1	P48362	394 aa	Known RBP	6.06	□□□□□ -1.44
ATM1	YMR301C	IRC3	Q06683	689 aa		6.06	□□□□□ -1.44
ATM1	YMR301C	SSP2	Q08646	371 aa		6.06	□□□□□ -1.44
ATM1	YMR301C	SET1	P38827	1080 aa	Known RBP	6.05	□□□□□ -1.44
ATM1	YMR301C	VPS70	P47161	811 aa		6.05	□□□□□ -1.44
ATM1	YMR301C	UGA3	P26370	528 aa		6.05	□□□□□ -1.44
ATM1	YMR301C	APL2	P36000	726 aa	Predicted RBP	6.05	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 40.7 ms