RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C LYS4P49367 693 aaPredicted RBP5.88□□□□□ -1.47
CAF4YKR036C KIP3P53086 805 aaKnown RBP5.88□□□□□ -1.47
CAF4YKR036C CSE4P36012 229 aa5.87□□□□□ -1.47
CAF4YKR036C FPR4Q06205 392 aaPredicted RBP5.87□□□□□ -1.47
CAF4YKR036C LAM6Q08001 693 aa5.87□□□□□ -1.47
CAF4YKR036C SSA2P10592 639 aaKnown RBP5.87□□□□□ -1.47
CAF4YKR036C PRP40P33203 583 aaKnown RBP5.87□□□□□ -1.47
CAF4YKR036C MTR4P47047 1073 aaKnown RBP5.87□□□□□ -1.47
CAF4YKR036C SSA1P10591 642 aaKnown RBP5.86□□□□□ -1.47
CAF4YKR036C RNA1P11745 407 aaKnown RBP5.86□□□□□ -1.47
CAF4YKR036C RIX1P38883 763 aaPredicted RBP5.86□□□□□ -1.47
CAF4YKR036C RPS24AP0CX31 135 aaKnown RBP5.86□□□□□ -1.47
CAF4YKR036C RPS24BP0CX32 135 aaKnown RBP5.86□□□□□ -1.47
CAF4YKR036C YKL133CP36066 463 aa5.86□□□□□ -1.47
CAF4YKR036C CHZ1P40019 153 aaPredicted RBP5.86□□□□□ -1.47
CAF4YKR036C YRB30P53107 440 aaPredicted RBP5.86□□□□□ -1.47
CAF4YKR036C LSP1Q12230 341 aaKnown RBP5.86□□□□□ -1.47
CAF4YKR036C SPC110P32380 944 aa5.85□□□□□ -1.47
CAF4YKR036C SMC3P47037 1230 aa5.85□□□□□ -1.47
CAF4YKR036C TEA1P47988 759 aa5.84□□□□□ -1.47
CAF4YKR036C COBP00163 385 aa5.84□□□□□ -1.48
CAF4YKR036C DEF1P35732 738 aaKnown RBP5.84□□□□□ -1.48
CAF4YKR036C XKS1P42826 600 aa5.84□□□□□ -1.48
CAF4YKR036C CTH1P47976 325 aa5.83□□□□□ -1.48
CAF4YKR036C FKS3Q04952 1785 aa5.82□□□□□ -1.48
CAF4YKR036C SUI2P20459 304 aaKnown RBP5.82□□□□□ -1.48
CAF4YKR036C SCT1P32784 759 aa5.82□□□□□ -1.48
CAF4YKR036C YKR075CP36155 307 aa5.82□□□□□ -1.48
CAF4YKR036C YRF1-3P0CX14 1859 aa5.82□□□□□ -1.48
CAF4YKR036C YRF1-7P0CX15 1859 aa5.82□□□□□ -1.48
CAF4YKR036C YRF1-6P53819 1859 aa5.82□□□□□ -1.48
CAF4YKR036C RPN1P38764 993 aaKnown RBP5.82□□□□□ -1.48
CAF4YKR036C KRI1P42846 591 aaKnown RBP5.82□□□□□ -1.48
CAF4YKR036C DIP2Q12220 943 aaPredicted RBP5.82□□□□□ -1.48
CAF4YKR036C IOC4Q04213 475 aa5.81□□□□□ -1.48
CAF4YKR036C ISW2Q08773 1120 aa5.81□□□□□ -1.48
CAF4YKR036C NAB6Q03735 1134 aaKnown RBP RIP-Chip data5.8□□□□□ -1.48not detected
CAF4YKR036C YDL144CQ07589 356 aa5.8□□□□□ -1.48
CAF4YKR036C YRF1-4O13559 1382 aa5.8□□□□□ -1.48
CAF4YKR036C CLB5P30283 435 aa5.79□□□□□ -1.48
CAF4YKR036C NMD2P38798 1089 aaKnown RBP5.79□□□□□ -1.48
CAF4YKR036C MEC3Q02574 474 aa5.79□□□□□ -1.48
CAF4YKR036C TPM2P40414 161 aa5.78□□□□□ -1.48
CAF4YKR036C SWE1P32944 819 aa5.78□□□□□ -1.48
CAF4YKR036C BDF1P35817 686 aa5.78□□□□□ -1.48
CAF4YKR036C RSC1P53236 928 aa5.78□□□□□ -1.48
CAF4YKR036C ALD3P54114 506 aa5.78□□□□□ -1.48
CAF4YKR036C HAP5Q02516 242 aa5.78□□□□□ -1.48
CAF4YKR036C LCD1Q04377 747 aa5.78□□□□□ -1.48
CAF4YKR036C CIN4P39110 191 aa5.77□□□□□ -1.49
CAF4YKR036C BMS1Q08965 1183 aaKnown RBP5.77□□□□□ -1.49
CAF4YKR036C SIC1P38634 284 aa5.76□□□□□ -1.49
CAF4YKR036C PIL1P53252 339 aaKnown RBP5.76□□□□□ -1.49
CAF4YKR036C APC1P53886 1748 aa5.76□□□□□ -1.49
CAF4YKR036C DPS1P04802 557 aaKnown RBP5.76□□□□□ -1.49
CAF4YKR036C RAD2P07276 1031 aa5.76□□□□□ -1.49
CAF4YKR036C RCR1P38212 213 aa5.76□□□□□ -1.49
CAF4YKR036C MED8P38304 223 aa5.76□□□□□ -1.49
CAF4YKR036C RTF1P53064 558 aa5.76□□□□□ -1.49
CAF4YKR036C FRK1Q03002 865 aaPredicted RBP5.76□□□□□ -1.49
CAF4YKR036C GAS4Q08271 471 aa5.76□□□□□ -1.49
CAF4YKR036C YML133CQ03099 1374 aa5.75□□□□□ -1.49
CAF4YKR036C YLL067CQ07888 1374 aa5.75□□□□□ -1.49
CAF4YKR036C YLL066CQ99208 1374 aa5.75□□□□□ -1.49
CAF4YKR036C MCM2P29469 868 aa5.75□□□□□ -1.49
CAF4YKR036C RPG1P38249 964 aaKnown RBP5.75□□□□□ -1.49
CAF4YKR036C MSB4Q12317 492 aa5.75□□□□□ -1.49
CAF4YKR036C NOP14Q99207 810 aaKnown RBP5.75□□□□□ -1.49
CAF4YKR036C ECM1P39715 212 aa5.74□□□□□ -1.49
CAF4YKR036C HOS3Q02959 697 aaKnown RBP5.74□□□□□ -1.49
CAF4YKR036C VPS60Q03390 229 aa5.74□□□□□ -1.49
CAF4YKR036C SIR4P11978 1358 aa5.74□□□□□ -1.49
CAF4YKR036C SPT2P06843 333 aaPredicted RBP5.74□□□□□ -1.49
CAF4YKR036C PDI1P17967 522 aaKnown RBP5.74□□□□□ -1.49
CAF4YKR036C LTV1P34078 463 aa5.74□□□□□ -1.49
CAF4YKR036C TCD1P38756 429 aa5.74□□□□□ -1.49
CAF4YKR036C DSN1P40568 576 aa5.74□□□□□ -1.49
CAF4YKR036C VPS4P52917 437 aa5.74□□□□□ -1.49
CAF4YKR036C ITC1P53125 1264 aa5.74□□□□□ -1.49
CAF4YKR036C ADE16P54113 591 aaKnown RBP5.74□□□□□ -1.49
CAF4YKR036C TSR3Q12094 313 aaKnown RBP5.74□□□□□ -1.49
CAF4YKR036C BYE1P36106 594 aa5.73□□□□□ -1.49
CAF4YKR036C FKH1P40466 484 aa5.73□□□□□ -1.49
CAF4YKR036C ATG13Q06628 738 aa5.73□□□□□ -1.49
CAF4YKR036C YIL177CP40434 1758 aa5.73□□□□□ -1.49
CAF4YKR036C YJL225CP40889 1758 aa5.73□□□□□ -1.49
CAF4YKR036C MSH3P25336 1018 aa5.72□□□□□ -1.49
CAF4YKR036C RKM3P38222 552 aa5.72□□□□□ -1.49
CAF4YKR036C MPP10P47083 593 aaKnown RBP5.72□□□□□ -1.49
CAF4YKR036C POL32P47110 350 aa5.72□□□□□ -1.49
CAF4YKR036C MSH4P40965 878 aaPredicted RBP5.72□□□□□ -1.49
CAF4YKR036C SAP155P43612 1002 aa5.72□□□□□ -1.49
CAF4YKR036C MDG1P53885 366 aa5.72□□□□□ -1.49
CAF4YKR036C PRP3Q03338 469 aaPredicted RBP5.72□□□□□ -1.49
CAF4YKR036C COG8Q04632 607 aa5.72□□□□□ -1.49
CAF4YKR036C ESC2Q06340 456 aa5.72□□□□□ -1.49
CAF4YKR036C BUG1Q12191 341 aa5.72□□□□□ -1.49
CAF4YKR036C SNF2P22082 1703 aa5.71□□□□□ -1.49
CAF4YKR036C RPO41P13433 1351 aaKnown RBP5.71□□□□□ -1.5
CAF4YKR036C DEP1P31385 405 aa5.71□□□□□ -1.5
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms