RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 STRCQ7RTU9 1775 aa39.21■■■■□ 3.87
VEGFA-232ENST00000640653 ABCC5O15440 1437 aa39.2■■■■□ 3.87
VEGFA-232ENST00000640653 CROCC2H7BZ55 1655 aa39.17■■■■□ 3.86
VEGFA-232ENST00000640653 MYO3AQ8NEV4 1616 aa39.17■■■■□ 3.86
VEGFA-232ENST00000640653 EIF2AK4Q9P2K8 1649 aaKnown RBP39.17■■■■□ 3.86
VEGFA-232ENST00000640653 DUOX2Q9NRD8 1548 aa39.16■■■■□ 3.86
VEGFA-232ENST00000640653 DAPK1P53355 1430 aa39.15■■■■□ 3.86
VEGFA-232ENST00000640653 RNF17Q9BXT8 1623 aaKnown RBP39.15■■■■□ 3.86
VEGFA-232ENST00000640653 DNMT1P26358 1616 aaKnown RBP39.14■■■■□ 3.86
VEGFA-232ENST00000640653 PZPP20742 1482 aa39.12■■■■□ 3.85
VEGFA-232ENST00000640653 NCOA1Q15788 1441 aa39.12■■■■□ 3.85
VEGFA-232ENST00000640653 ZNF142P52746 1687 aaPredicted RBP39.12■■■■□ 3.85
VEGFA-232ENST00000640653 KIF15Q9NS87 1388 aa39.11■■■■□ 3.85
VEGFA-232ENST00000640653 FBXO41Q8TF61 875 aa39.1■■■■□ 3.85
VEGFA-232ENST00000640653 CEP170BQ9Y4F5 1589 aaPredicted RBP39.1■■■■□ 3.85
VEGFA-232ENST00000640653 CAMSAP1Q5T5Y3 1602 aa39.1■■■■□ 3.85
VEGFA-232ENST00000640653 PTPRTO14522 1441 aa39.09■■■■□ 3.85
VEGFA-232ENST00000640653 RRP7BPQ9NSQ0 103 aa39.06■■■■□ 3.84
VEGFA-232ENST00000640653 TNRQ92752 1358 aa39.06■■■■□ 3.84
VEGFA-232ENST00000640653 ZC3H13Q5T200 1668 aaKnown RBP39.04■■■■□ 3.84
VEGFA-232ENST00000640653 FBXO31Q5XUX0 539 aaPredicted RBP39.04■■■■□ 3.84
VEGFA-232ENST00000640653 ERBINQ96RT1 1412 aa39.04■■■■□ 3.84
VEGFA-232ENST00000640653 ABCC3O15438 1527 aa39.03■■■■□ 3.84
VEGFA-232ENST00000640653 A2ML1A8K2U0 1454 aa39.02■■■■□ 3.84
VEGFA-232ENST00000640653 PLA2R1Q13018 1463 aa39■■■■□ 3.83
VEGFA-232ENST00000640653 ANKRD30AQ9BXX3 1397 aa39■■■■□ 3.83
VEGFA-232ENST00000640653 MROH1Q8NDA8 1641 aa39■■■■□ 3.83
VEGFA-232ENST00000640653 FAM50AQ14320 339 aaKnown RBP38.99■■■■□ 3.83
VEGFA-232ENST00000640653 CERKQ8TCT0 537 aa38.98■■■■□ 3.83
VEGFA-232ENST00000640653 CHIC2Q9UKJ5 165 aa38.98■■■■□ 3.83
VEGFA-232ENST00000640653 PKD2Q13563 968 aa38.94■■■■□ 3.82
VEGFA-232ENST00000640653 NCKAP5LQ9HCH0 1330 aa38.93■■■■□ 3.82
VEGFA-232ENST00000640653 PRDM15P57071 1507 aaPredicted RBP38.91■■■■□ 3.82
VEGFA-232ENST00000640653 NLRP1Q9C000 1473 aa38.89■■■■□ 3.82
VEGFA-232ENST00000640653 ADGRL2O95490 1459 aa38.88■■■■□ 3.81
VEGFA-232ENST00000640653 CEP152O94986 1710 aa38.88■■■■□ 3.81
VEGFA-232ENST00000640653 SPATA31D1Q6ZQQ2 1576 aa38.85■■■■□ 3.81
VEGFA-232ENST00000640653 DEPDC5O75140 1603 aa38.84■■■■□ 3.81
VEGFA-232ENST00000640653 KANK1Q14678 1352 aa38.83■■■■□ 3.81
VEGFA-232ENST00000640653 GRWD1Q9BQ67 446 aaKnown RBP eCLIP38.83■■■■□ 3.811e-14■■■□□ 16.5
VEGFA-232ENST00000640653 ERVK-7P63135 1459 aa38.83■■■■□ 3.81
VEGFA-232ENST00000640653 THEMISQ8N1K5 641 aaPredicted RBP38.79■■■■□ 3.8
VEGFA-232ENST00000640653 ARHGAP31Q2M1Z3 1444 aa38.79■■■■□ 3.8
VEGFA-232ENST00000640653 UGGT1Q9NYU2 1555 aa38.78■■■■□ 3.8
VEGFA-232ENST00000640653 LTBP4Q8N2S1 1624 aa38.74■■■■□ 3.79
VEGFA-232ENST00000640653 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.72■■■■□ 3.793e-7■■□□□ 14.3
VEGFA-232ENST00000640653 PPARGC1BQ86YN6 1023 aaKnown RBP38.72■■■■□ 3.79
VEGFA-232ENST00000640653 ANKRD50Q9ULJ7 1429 aa38.71■■■■□ 3.79
VEGFA-232ENST00000640653 POLR1AO95602 1720 aaPredicted RBP38.7■■■■□ 3.79
VEGFA-232ENST00000640653 ANKLE2Q86XL3 938 aa38.7■■■■□ 3.79
VEGFA-232ENST00000640653 LMTK2Q8IWU2 1503 aa38.69■■■■□ 3.78
VEGFA-232ENST00000640653 VWDEQ8N2E2 1590 aa38.69■■■■□ 3.78
VEGFA-232ENST00000640653 ZNF335Q9H4Z2 1342 aaPredicted RBP38.64■■■■□ 3.78
VEGFA-232ENST00000640653 CFAP65Q6ZU64 1925 aaKnown RBP38.64■■■■□ 3.78
VEGFA-232ENST00000640653 NEURL4Q96JN8 1562 aa38.64■■■■□ 3.78
VEGFA-232ENST00000640653 ROCK1Q13464 1354 aa38.62■■■■□ 3.77
VEGFA-232ENST00000640653 IQSEC2Q5JU85 1478 aa38.61■■■■□ 3.77
VEGFA-232ENST00000640653 EFCAB6Q5THR3 1501 aa38.57■■■■□ 3.76
VEGFA-232ENST00000640653 UBR1Q8IWV7 1749 aa38.55■■■■□ 3.76
VEGFA-232ENST00000640653 MED14O60244 1454 aa38.55■■■■□ 3.76
VEGFA-232ENST00000640653 ITGAEP38570 1179 aa38.54■■■■□ 3.76
VEGFA-232ENST00000640653 NPHP4O75161 1426 aaPredicted RBP38.54■■■■□ 3.76
VEGFA-232ENST00000640653 UNC13BO14795 1591 aa38.47■■■■□ 3.75
VEGFA-232ENST00000640653 RPRD2Q5VT52 1461 aaKnown RBP38.46■■■■□ 3.75
VEGFA-232ENST00000640653 NOS1P29475 1434 aa38.46■■■■□ 3.75
VEGFA-232ENST00000640653 IQGAP1P46940 1657 aa38.46■■■■□ 3.75
VEGFA-232ENST00000640653 PIK3C2BO00750 1634 aa38.45■■■■□ 3.75
VEGFA-232ENST00000640653 STAG3Q9UJ98 1225 aa38.45■■■■□ 3.75
VEGFA-232ENST00000640653 SLIT1O75093 1534 aa38.43■■■■□ 3.74
VEGFA-232ENST00000640653 ARHGAP23Q9P227 1491 aa38.43■■■■□ 3.74
VEGFA-232ENST00000640653 RRBP1Q9P2E9 1410 aaKnown RBP38.43■■■■□ 3.74
VEGFA-232ENST00000640653 SYNMO15061 1565 aa38.43■■■■□ 3.74
VEGFA-232ENST00000640653 TET3O43151 1660 aa38.43■■■■□ 3.74
VEGFA-232ENST00000640653 SCAF11Q99590 1463 aaKnown RBP38.42■■■■□ 3.74
VEGFA-232ENST00000640653 IDI1Q13907 227 aa38.42■■■■□ 3.74
VEGFA-232ENST00000640653 CPS1P31327 1500 aa38.41■■■■□ 3.74
VEGFA-232ENST00000640653 SLC52A1Q9NWF4 448 aa38.39■■■■□ 3.74
VEGFA-232ENST00000640653 EID1Q9Y6B2 187 aa38.39■■■■□ 3.74
VEGFA-232ENST00000640653 KDM5AP29375 1690 aaKnown RBP38.39■■■■□ 3.74
VEGFA-232ENST00000640653 TXNDC2Q86VQ3 553 aa38.38■■■■□ 3.73
VEGFA-232ENST00000640653 GCC2Q8IWJ2 1684 aa38.36■■■■□ 3.73
VEGFA-232ENST00000640653 TMEM2Q9UHN6 1383 aa38.35■■■■□ 3.73
VEGFA-232ENST00000640653 LTKP29376 864 aa38.35■■■■□ 3.73
VEGFA-232ENST00000640653 IQGAP3Q86VI3 1631 aa38.31■■■■□ 3.72
VEGFA-232ENST00000640653 ADGRB3O60242 1522 aa38.31■■■■□ 3.72
VEGFA-232ENST00000640653 NUP155O75694 1391 aa38.31■■■■□ 3.72
VEGFA-232ENST00000640653 UBAP1LF5GYI3 381 aa38.29■■■■□ 3.72
VEGFA-232ENST00000640653 E9PCH4 1651 aa38.23■■■■□ 3.71
VEGFA-232ENST00000640653 NAIPQ13075 1403 aa38.14■■■■□ 3.7
VEGFA-232ENST00000640653 STRCP1A6NGW2 1772 aa38.14■■■■□ 3.7
VEGFA-232ENST00000640653 TOM1O60784 492 aa38.13■■■■□ 3.69
VEGFA-232ENST00000640653 LRRC7Q96NW7 1537 aa38.11■■■■□ 3.69
VEGFA-232ENST00000640653 TMEM131LA2VDJ0 1609 aa38.1■■■■□ 3.69
VEGFA-232ENST00000640653 HDGFP51858 240 aaKnown RBP38.1■■■■□ 3.69
VEGFA-232ENST00000640653 CHGAP10645 457 aaKnown RBP38.08■■■■□ 3.69
VEGFA-232ENST00000640653 ZFYVE9O95405 1425 aa38.07■■■■□ 3.69
VEGFA-232ENST00000640653 HFM1A2PYH4 1435 aa38.05■■■■□ 3.68
VEGFA-232ENST00000640653 RIMS2Q9UQ26 1411 aa38.05■■■■□ 3.68
VEGFA-232ENST00000640653 MYO5BQ9ULV0 1848 aa38.05■■■■□ 3.68
VEGFA-232ENST00000640653 BCANQ96GW7 911 aa38.04■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms