RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TNRQ92752 1358 aa26.84■■□□□ 1.89
CLN3-264ENST00000637985 FBXO31Q5XUX0 539 aaPredicted RBP26.84■■□□□ 1.89
CLN3-264ENST00000637985 ANKLE2Q86XL3 938 aa26.84■■□□□ 1.89
CLN3-264ENST00000637985 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.8■■□□□ 1.88
CLN3-264ENST00000637985 MED14O60244 1454 aa26.8■■□□□ 1.88
CLN3-264ENST00000637985 FYCO1Q9BQS8 1478 aa26.8■■□□□ 1.88
CLN3-264ENST00000637985 THEMISQ8N1K5 641 aaPredicted RBP26.78■■□□□ 1.88
CLN3-264ENST00000637985 PZPP20742 1482 aa26.78■■□□□ 1.88
CLN3-264ENST00000637985 NPHP4O75161 1426 aaPredicted RBP26.77■■□□□ 1.88
CLN3-264ENST00000637985 RGS17Q9UGC6 210 aaPredicted RBP26.77■■□□□ 1.88
CLN3-264ENST00000637985 DHX29Q7Z478 1369 aaKnown RBP26.76■■□□□ 1.87
CLN3-264ENST00000637985 CCNB3Q8WWL7 1395 aa26.76■■□□□ 1.87
CLN3-264ENST00000637985 DEPDC5O75140 1603 aa26.76■■□□□ 1.87
CLN3-264ENST00000637985 RTEL1-TNFRSF6BF6WH68 1400 aa26.73■■□□□ 1.87
CLN3-264ENST00000637985 LRRC7Q96NW7 1537 aa26.72■■□□□ 1.87
CLN3-264ENST00000637985 SENP3Q9H4L4 574 aaPredicted RBP26.72■■□□□ 1.87
CLN3-264ENST00000637985 NLRP1Q9C000 1473 aa26.72■■□□□ 1.87
CLN3-264ENST00000637985 MBD5Q9P267 1494 aa26.72■■□□□ 1.87
CLN3-264ENST00000637985 MIA2Q96PC5 1412 aa26.72■■□□□ 1.87
CLN3-264ENST00000637985 ZNF644Q9H582 1327 aaPredicted RBP26.71■■□□□ 1.87
CLN3-264ENST00000637985 FAM135AQ9P2D6 1515 aa26.71■■□□□ 1.87
CLN3-264ENST00000637985 STRCP1A6NGW2 1772 aa26.71■■□□□ 1.87
CLN3-264ENST00000637985 UGGT1Q9NYU2 1555 aa26.71■■□□□ 1.87
CLN3-264ENST00000637985 KDM5DQ9BY66 1539 aa26.7■■□□□ 1.87
CLN3-264ENST00000637985 KIF3BO15066 747 aa26.69■■□□□ 1.86
CLN3-264ENST00000637985 IQGAP1P46940 1657 aa26.69■■□□□ 1.86
CLN3-264ENST00000637985 RNF17Q9BXT8 1623 aaKnown RBP26.68■■□□□ 1.86
CLN3-264ENST00000637985 WASHC2CQ9Y4E1 1318 aa26.67■■□□□ 1.86
CLN3-264ENST00000637985 SYNMO15061 1565 aa26.64■■□□□ 1.86
CLN3-264ENST00000637985 CHIC1Q5VXU3 224 aa26.61■■□□□ 1.85
CLN3-264ENST00000637985 MTUS2Q5JR59 1369 aa26.59■■□□□ 1.85
CLN3-264ENST00000637985 TIAM1Q13009 1591 aa26.59■■□□□ 1.85
CLN3-264ENST00000637985 POTEAQ6S8J7 498 aa26.55■■□□□ 1.84
CLN3-264ENST00000637985 ZC3H13Q5T200 1668 aaKnown RBP26.54■■□□□ 1.84
CLN3-264ENST00000637985 CCDC141Q6ZP82 1450 aa26.52■■□□□ 1.84
CLN3-264ENST00000637985 RSPH4AQ5TD94 716 aa26.49■■□□□ 1.83
CLN3-264ENST00000637985 XIRP1Q702N8 1843 aaKnown RBP26.48■■□□□ 1.83
CLN3-264ENST00000637985 FAM135BQ49AJ0 1406 aa26.48■■□□□ 1.83
CLN3-264ENST00000637985 CEP162Q5TB80 1403 aa26.46■■□□□ 1.83
CLN3-264ENST00000637985 EHBP1L1Q8N3D4 1523 aa26.45■■□□□ 1.83
CLN3-264ENST00000637985 SCAF11Q99590 1463 aaKnown RBP26.45■■□□□ 1.82
CLN3-264ENST00000637985 ERVK-7P63135 1459 aa26.44■■□□□ 1.82
CLN3-264ENST00000637985 ABCC3O15438 1527 aa26.44■■□□□ 1.82
CLN3-264ENST00000637985 UBR1Q8IWV7 1749 aa26.42■■□□□ 1.82
CLN3-264ENST00000637985 CAMSAP2Q08AD1 1489 aa26.42■■□□□ 1.82
CLN3-264ENST00000637985 LTKP29376 864 aa26.41■■□□□ 1.82
CLN3-264ENST00000637985 NCOA2Q15596 1464 aa26.4■■□□□ 1.82
CLN3-264ENST00000637985 ARHGAP23Q9P227 1491 aa26.39■■□□□ 1.82
CLN3-264ENST00000637985 TXNDC2Q86VQ3 553 aa26.39■■□□□ 1.82
CLN3-264ENST00000637985 SLIT1O75093 1534 aa26.38■■□□□ 1.81
CLN3-264ENST00000637985 TSPY4P0CV99 314 aa26.36■■□□□ 1.81
CLN3-264ENST00000637985 TSPY10P0CW01 314 aa26.36■■□□□ 1.81
CLN3-264ENST00000637985 ARHGEF5Q12774 1597 aa26.36■■□□□ 1.81
CLN3-264ENST00000637985 SETD1AO15047 1707 aaKnown RBP26.34■■□□□ 1.81
CLN3-264ENST00000637985 CFAP65Q6ZU64 1925 aaKnown RBP26.33■■□□□ 1.81
CLN3-264ENST00000637985 ROBO1Q9Y6N7 1651 aa26.31■■□□□ 1.8
CLN3-264ENST00000637985 TMEM94Q12767 1356 aa26.31■■□□□ 1.8
CLN3-264ENST00000637985 MROH1Q8NDA8 1641 aa26.3■■□□□ 1.8
CLN3-264ENST00000637985 EID1Q9Y6B2 187 aa26.29■■□□□ 1.8
CLN3-264ENST00000637985 EIF2AK4Q9P2K8 1649 aaKnown RBP26.28■■□□□ 1.8
CLN3-264ENST00000637985 CEP152O94986 1710 aa26.26■■□□□ 1.79
CLN3-264ENST00000637985 MAP3K1Q13233 1512 aa26.25■■□□□ 1.79
CLN3-264ENST00000637985 KCNA6P17658 529 aa26.25■■□□□ 1.79
CLN3-264ENST00000637985 MAST1Q9Y2H9 1570 aa26.24■■□□□ 1.79
CLN3-264ENST00000637985 TMEM2Q9UHN6 1383 aa26.23■■□□□ 1.79
CLN3-264ENST00000637985 LRRC9Q6ZRR7 1453 aa26.23■■□□□ 1.79
CLN3-264ENST00000637985 ARHGAP31Q2M1Z3 1444 aa26.22■■□□□ 1.79
CLN3-264ENST00000637985 PROSER2Q86WR7 435 aaPredicted RBP26.2■■□□□ 1.78
CLN3-264ENST00000637985 UPF1Q92900 1129 aaKnown RBP eCLIP26.2■■□□□ 1.78
CLN3-264ENST00000637985 JCADQ9P266 1359 aa26.2■■□□□ 1.78
CLN3-264ENST00000637985 RBM33Q96EV2 1170 aaKnown RBP26.19■■□□□ 1.78
CLN3-264ENST00000637985 PIK3C2BO00750 1634 aa26.17■■□□□ 1.78
CLN3-264ENST00000637985 PRDM15P57071 1507 aaPredicted RBP26.17■■□□□ 1.78
CLN3-264ENST00000637985 TET3O43151 1660 aa26.16■■□□□ 1.78
CLN3-264ENST00000637985 PHLPP1O60346 1717 aa26.16■■□□□ 1.78
CLN3-264ENST00000637985 SLAIN2Q9P270 581 aa26.15■■□□□ 1.78
CLN3-264ENST00000637985 SLC26A8Q96RN1 970 aa26.14■■□□□ 1.78
CLN3-264ENST00000637985 KDM5AP29375 1690 aaKnown RBP26.12■■□□□ 1.77
CLN3-264ENST00000637985 NKTRP30414 1462 aaKnown RBP26.12■■□□□ 1.77
CLN3-264ENST00000637985 STAG3Q9UJ98 1225 aa26.12■■□□□ 1.77
CLN3-264ENST00000637985 DUOX2Q9NRD8 1548 aa26.12■■□□□ 1.77
CLN3-264ENST00000637985 MSH6P52701 1360 aa26.11■■□□□ 1.77
CLN3-264ENST00000637985 NWD1Q149M9 1564 aa26.11■■□□□ 1.77
CLN3-264ENST00000637985 EFCAB6Q5THR3 1501 aa26.1■■□□□ 1.77
CLN3-264ENST00000637985 IDI1Q13907 227 aa26.08■■□□□ 1.77
CLN3-264ENST00000637985 ZNF772Q68DY9 489 aaPredicted RBP26.08■■□□□ 1.77
CLN3-264ENST00000637985 LRP6O75581 1613 aa26.07■■□□□ 1.76
CLN3-264ENST00000637985 COL16A1Q07092 1604 aaPredicted RBP26.07■■□□□ 1.76
CLN3-264ENST00000637985 TRIM52Q96A61 297 aa26.06■■□□□ 1.76
CLN3-264ENST00000637985 SPATA31A6Q5VVP1 1343 aa26.06■■□□□ 1.76
CLN3-264ENST00000637985 FGD6Q6ZV73 1430 aa26.04■■□□□ 1.76
CLN3-264ENST00000637985 MEX3CQ5U5Q3 659 aaKnown RBP26.01■■□□□ 1.75
CLN3-264ENST00000637985 ERBINQ96RT1 1412 aa26.01■■□□□ 1.75
CLN3-264ENST00000637985 KIF15Q9NS87 1388 aa26■■□□□ 1.75
CLN3-264ENST00000637985 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26■■□□□ 1.75
CLN3-264ENST00000637985 SRCAPQ6ZRS2 3230 aa26■■□□□ 1.75
CLN3-264ENST00000637985 MYOM3Q5VTT5 1437 aa25.99■■□□□ 1.75
CLN3-264ENST00000637985 RXRBP28702 533 aa25.97■■□□□ 1.75
CLN3-264ENST00000637985 KANK1Q14678 1352 aa25.95■■□□□ 1.75
CLN3-264ENST00000637985 RRP7BPQ9NSQ0 103 aa25.95■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms