RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 NISCHQ9Y2I1 1504 aa42.08■■■■■ 4.33
CLN3-264ENST00000637985 ABCC9O60706 1549 aa38.92■■■■□ 3.82
CLN3-264ENST00000637985 CCDC180Q9P1Z9 1646 aa38.1■■■■□ 3.69
CLN3-264ENST00000637985 DNAJC5BQ9UF47 199 aa37.35■■■■□ 3.57
CLN3-264ENST00000637985 RB1CC1Q8TDY2 1594 aa36.67■■■■□ 3.46
CLN3-264ENST00000637985 NACADO15069 1562 aa36.24■■■■□ 3.39
CLN3-264ENST00000637985 PABPN1Q86U42 306 aaKnown RBP eCLIP36.13■■■■□ 3.37
CLN3-264ENST00000637985 UNC13AQ9UPW8 1703 aa35.85■■■■□ 3.33
CLN3-264ENST00000637985 DCAF8L2P0C7V8 631 aa35.84■■■■□ 3.33
CLN3-264ENST00000637985 BICRAQ9NZM4 1560 aa35.68■■■■□ 3.3
CLN3-264ENST00000637985 MYO15BQ96JP2 1530 aa35.5■■■■□ 3.27
CLN3-264ENST00000637985 CECR2Q9BXF3 1484 aa35.16■■■■□ 3.22
CLN3-264ENST00000637985 CC2D2AQ9P2K1 1620 aa35.13■■■■□ 3.21
CLN3-264ENST00000637985 SHROOM4Q9ULL8 1493 aa35.1■■■■□ 3.21
CLN3-264ENST00000637985 DNAJC5Q9H3Z4 198 aa34.91■■■■□ 3.18
CLN3-264ENST00000637985 EIF4G1Q04637 1599 aaKnown RBP34.85■■■■□ 3.17
CLN3-264ENST00000637985 DCAF1Q9Y4B6 1507 aa34.72■■■■□ 3.15
CLN3-264ENST00000637985 ZCCHC6Q5VYS8 1495 aaKnown RBP34.68■■■■□ 3.14
CLN3-264ENST00000637985 SCRIBQ14160 1630 aa34.63■■■■□ 3.13
CLN3-264ENST00000637985 CUX2O14529 1486 aa33.91■■■■□ 3.02
CLN3-264ENST00000637985 ERCC6Q03468 1493 aa33.64■■■□□ 2.98
CLN3-264ENST00000637985 NCAPD3P42695 1498 aa33.5■■■□□ 2.95
CLN3-264ENST00000637985 ATAD2BQ9ULI0 1458 aa33.25■■■□□ 2.91
CLN3-264ENST00000637985 NESP48681 1621 aa33.2■■■□□ 2.91
CLN3-264ENST00000637985 HMGXB3Q12766 1538 aa33.13■■■□□ 2.89
CLN3-264ENST00000637985 SMARCA2P51531 1590 aa33.09■■■□□ 2.89
CLN3-264ENST00000637985 THOC2Q8NI27 1593 aaKnown RBP33.03■■■□□ 2.88
CLN3-264ENST00000637985 SMARCA4P51532 1647 aa32.99■■■□□ 2.87
CLN3-264ENST00000637985 TRIM41Q8WV44 630 aa32.95■■■□□ 2.87
CLN3-264ENST00000637985 BAZ1BQ9UIG0 1483 aaKnown RBP32.86■■■□□ 2.85
CLN3-264ENST00000637985 LAMC3Q9Y6N6 1575 aa32.83■■■□□ 2.85
CLN3-264ENST00000637985 KIF21AQ7Z4S6 1674 aa32.72■■■□□ 2.83
CLN3-264ENST00000637985 PEG3Q9GZU2 1588 aa32.7■■■□□ 2.83
CLN3-264ENST00000637985 BAZ1AQ9NRL2 1556 aaPredicted RBP32.7■■■□□ 2.82
CLN3-264ENST00000637985 PDS5BQ9NTI5 1447 aa32.68■■■□□ 2.82
CLN3-264ENST00000637985 MRC2Q9UBG0 1479 aa32.44■■■□□ 2.78
CLN3-264ENST00000637985 CADPSQ9ULU8 1353 aa32.43■■■□□ 2.78
CLN3-264ENST00000637985 WDR62O43379 1518 aa32.41■■■□□ 2.78
CLN3-264ENST00000637985 MROH2BQ7Z745 1585 aa32.41■■■□□ 2.78
CLN3-264ENST00000637985 OSCARQ8IYS5 282 aa32.25■■■□□ 2.75
CLN3-264ENST00000637985 CEP164Q9UPV0 1460 aa32.13■■■□□ 2.73
CLN3-264ENST00000637985 FANCD2Q9BXW9 1451 aa32.03■■■□□ 2.72
CLN3-264ENST00000637985 WIZO95785 1651 aa31.95■■■□□ 2.71
CLN3-264ENST00000637985 CFTRP13569 1480 aa31.88■■■□□ 2.69
CLN3-264ENST00000637985 RIMBP3CA6NJZ7 1639 aa31.88■■■□□ 2.69
CLN3-264ENST00000637985 RIMBP3BA6NNM3 1639 aa31.88■■■□□ 2.69
CLN3-264ENST00000637985 RIMBP3Q9UFD9 1639 aa31.88■■■□□ 2.69
CLN3-264ENST00000637985 URB2Q14146 1524 aaKnown RBP31.84■■■□□ 2.69
CLN3-264ENST00000637985 ARHGEF11O15085 1522 aa31.7■■■□□ 2.67
CLN3-264ENST00000637985 ZNF608Q9ULD9 1512 aaPredicted RBP31.59■■■□□ 2.65
CLN3-264ENST00000637985 IFT140Q96RY7 1462 aa31.54■■■□□ 2.64
CLN3-264ENST00000637985 CYB5RLQ6IPT4 315 aa31.53■■■□□ 2.64
CLN3-264ENST00000637985 TOP2AP11388 1531 aaKnown RBP31.49■■■□□ 2.63
CLN3-264ENST00000637985 RSF1Q96T23 1441 aaPredicted RBP31.44■■■□□ 2.62
CLN3-264ENST00000637985 PRDM2Q13029 1718 aa31.43■■■□□ 2.62
CLN3-264ENST00000637985 TRHP20396 242 aaPredicted RBP31.42■■■□□ 2.62
CLN3-264ENST00000637985 ARAP1Q96P48 1450 aa31.34■■■□□ 2.61
CLN3-264ENST00000637985 EIF4G3O43432 1585 aaKnown RBP31.34■■■□□ 2.61
CLN3-264ENST00000637985 TOPBP1Q92547 1522 aa31.34■■■□□ 2.61
CLN3-264ENST00000637985 CHD1O14646 1710 aa31.26■■■□□ 2.59
CLN3-264ENST00000637985 ABCC8Q09428 1581 aa31.22■■■□□ 2.59
CLN3-264ENST00000637985 AQRO60306 1485 aaKnown RBP eCLIP31.19■■■□□ 2.586e-6■■■■□ 25.1
CLN3-264ENST00000637985 CCDC88BA6NC98 1476 aa31.17■■■□□ 2.58
CLN3-264ENST00000637985 DNMBPQ6XZF7 1577 aa31.13■■■□□ 2.57
CLN3-264ENST00000637985 TARBP1Q13395 1621 aaKnown RBP31.13■■■□□ 2.57
CLN3-264ENST00000637985 FBLN2P98095 1184 aa31.12■■■□□ 2.57
CLN3-264ENST00000637985 AEBP2Q6ZN18 517 aaPredicted RBP31.12■■■□□ 2.57
CLN3-264ENST00000637985 POLA1P09884 1462 aaPredicted RBP30.96■■■□□ 2.55
CLN3-264ENST00000637985 CLASP1Q7Z460 1538 aa30.92■■■□□ 2.54
CLN3-264ENST00000637985 TDRD9Q8NDG6 1382 aaKnown RBP30.87■■■□□ 2.53
CLN3-264ENST00000637985 RAD54L2Q9Y4B4 1467 aa30.87■■■□□ 2.53
CLN3-264ENST00000637985 SNAPC4Q5SXM2 1469 aa30.82■■■□□ 2.53
CLN3-264ENST00000637985 SOGA1O94964 1423 aa30.81■■■□□ 2.52
CLN3-264ENST00000637985 SYNJ1O43426 1573 aa30.79■■■□□ 2.52
CLN3-264ENST00000637985 CHMP7Q8WUX9 453 aaPredicted RBP30.78■■■□□ 2.52
CLN3-264ENST00000637985 WDR97A6NE52 1622 aa30.74■■■□□ 2.51
CLN3-264ENST00000637985 MAGI1Q96QZ7 1491 aaPredicted RBP30.73■■■□□ 2.51
CLN3-264ENST00000637985 SYNJ2O15056 1496 aa30.64■■■□□ 2.5
CLN3-264ENST00000637985 GAPVD1Q14C86 1478 aa30.64■■■□□ 2.5
CLN3-264ENST00000637985 FGD5Q6ZNL6 1462 aa30.64■■■□□ 2.5
CLN3-264ENST00000637985 GRIN2BQ13224 1484 aa30.63■■■□□ 2.49
CLN3-264ENST00000637985 CUX1P39880 1505 aa30.49■■■□□ 2.47
CLN3-264ENST00000637985 PBRM1Q86U86 1689 aa30.42■■■□□ 2.46
CLN3-264ENST00000637985 ERCC6L2Q5T890 1561 aa30.37■■■□□ 2.45
CLN3-264ENST00000637985 ABCA5Q8WWZ7 1642 aa30.28■■■□□ 2.44
CLN3-264ENST00000637985 ABCA10Q8WWZ4 1543 aa30.27■■■□□ 2.44
CLN3-264ENST00000637985 GRIN2AQ12879 1464 aa30.25■■■□□ 2.43
CLN3-264ENST00000637985 CEP170Q5SW79 1584 aa30.24■■■□□ 2.43
CLN3-264ENST00000637985 KIF13AQ9H1H9 1805 aa30.2■■■□□ 2.43
CLN3-264ENST00000637985 NUP160Q12769 1436 aa30.2■■■□□ 2.42
CLN3-264ENST00000637985 SHROOM2Q13796 1616 aa30.14■■■□□ 2.42
CLN3-264ENST00000637985 ADAMTS12P58397 1594 aa30.1■■■□□ 2.41
CLN3-264ENST00000637985 FHAD1B1AJZ9 1412 aa30■■■□□ 2.39
CLN3-264ENST00000637985 FAM69CQ0P6D2 419 aa29.97■■■□□ 2.39
CLN3-264ENST00000637985 WRNQ14191 1432 aaPredicted RBP eCLIP29.96■■■□□ 2.39
CLN3-264ENST00000637985 ABCC10Q5T3U5 1492 aa29.96■■■□□ 2.39
CLN3-264ENST00000637985 PRG4Q92954 1404 aaPredicted RBP29.96■■■□□ 2.39
CLN3-264ENST00000637985 KDM4FA0A1W2PPD8 638 aa29.95■■■□□ 2.39
CLN3-264ENST00000637985 ILDR1Q86SU0 546 aaPredicted RBP29.89■■■□□ 2.38
CLN3-264ENST00000637985 JPH4Q96JJ6 628 aa29.89■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms