RNA–Protein interactions for RNA: ENST00000636212.1

CLN6-213, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 1,053 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-213ENST00000636212 MYO3AQ8NEV4 1616 aa29.44■■■□□ 2.3
CLN6-213ENST00000636212 SHANK2Q9UPX8 1470 aa29.42■■■□□ 2.3
CLN6-213ENST00000636212 EIF2AK4Q9P2K8 1649 aaKnown RBP29.42■■■□□ 2.3
CLN6-213ENST00000636212 DUOX2Q9NRD8 1548 aa29.41■■■□□ 2.3
CLN6-213ENST00000636212 PTPRTO14522 1441 aa29.41■■■□□ 2.3
CLN6-213ENST00000636212 NCOA1Q15788 1441 aa29.41■■■□□ 2.3
CLN6-213ENST00000636212 CAMSAP1Q5T5Y3 1602 aa29.41■■■□□ 2.3
CLN6-213ENST00000636212 ZNF142P52746 1687 aaPredicted RBP29.4■■■□□ 2.3
CLN6-213ENST00000636212 TCOF1Q13428 1488 aaKnown RBP29.4■■■□□ 2.3
CLN6-213ENST00000636212 CROCC2H7BZ55 1655 aa29.4■■■□□ 2.3
CLN6-213ENST00000636212 CEP170BQ9Y4F5 1589 aaPredicted RBP29.39■■■□□ 2.3
CLN6-213ENST00000636212 PZPP20742 1482 aa29.39■■■□□ 2.3
CLN6-213ENST00000636212 RNF17Q9BXT8 1623 aaKnown RBP29.38■■■□□ 2.29
CLN6-213ENST00000636212 ABCC5O15440 1437 aa29.38■■■□□ 2.29
CLN6-213ENST00000636212 DAPK1P53355 1430 aa29.38■■■□□ 2.29
CLN6-213ENST00000636212 CERKQ8TCT0 537 aa29.38■■■□□ 2.29
CLN6-213ENST00000636212 DNMT1P26358 1616 aaKnown RBP29.37■■■□□ 2.29
CLN6-213ENST00000636212 TNRQ92752 1358 aa29.37■■■□□ 2.29
CLN6-213ENST00000636212 KIF15Q9NS87 1388 aa29.37■■■□□ 2.29
CLN6-213ENST00000636212 ZC3H13Q5T200 1668 aaKnown RBP29.34■■■□□ 2.29
CLN6-213ENST00000636212 RRP7BPQ9NSQ0 103 aa29.34■■■□□ 2.29
CLN6-213ENST00000636212 A2ML1A8K2U0 1454 aa29.34■■■□□ 2.29
CLN6-213ENST00000636212 FBXO31Q5XUX0 539 aaPredicted RBP29.33■■■□□ 2.29
CLN6-213ENST00000636212 PLA2R1Q13018 1463 aa29.32■■■□□ 2.28
CLN6-213ENST00000636212 PKD2Q13563 968 aa29.32■■■□□ 2.28
CLN6-213ENST00000636212 ERBINQ96RT1 1412 aa29.31■■■□□ 2.28
CLN6-213ENST00000636212 ANKRD30AQ9BXX3 1397 aa29.31■■■□□ 2.28
CLN6-213ENST00000636212 FAM50AQ14320 339 aaKnown RBP29.3■■■□□ 2.28
CLN6-213ENST00000636212 NCKAP5LQ9HCH0 1330 aa29.29■■■□□ 2.28
CLN6-213ENST00000636212 ABCC3O15438 1527 aa29.29■■■□□ 2.28
CLN6-213ENST00000636212 CHIC2Q9UKJ5 165 aa29.28■■■□□ 2.28
CLN6-213ENST00000636212 NLRP1Q9C000 1473 aa29.24■■■□□ 2.27
CLN6-213ENST00000636212 MROH1Q8NDA8 1641 aa29.23■■■□□ 2.27
CLN6-213ENST00000636212 KANK1Q14678 1352 aa29.23■■■□□ 2.27
CLN6-213ENST00000636212 THEMISQ8N1K5 641 aaPredicted RBP29.21■■■□□ 2.27
CLN6-213ENST00000636212 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.21■■■□□ 2.27
CLN6-213ENST00000636212 CEP152O94986 1710 aa29.2■■■□□ 2.27
CLN6-213ENST00000636212 PRDM15P57071 1507 aaPredicted RBP29.2■■■□□ 2.26
CLN6-213ENST00000636212 SPATA31D1Q6ZQQ2 1576 aa29.17■■■□□ 2.26
CLN6-213ENST00000636212 UGGT1Q9NYU2 1555 aa29.17■■■□□ 2.26
CLN6-213ENST00000636212 ADGRL2O95490 1459 aa29.16■■■□□ 2.26
CLN6-213ENST00000636212 ERVK-7P63135 1459 aa29.16■■■□□ 2.26
CLN6-213ENST00000636212 ANKLE2Q86XL3 938 aa29.14■■■□□ 2.26
CLN6-213ENST00000636212 DEPDC5O75140 1603 aa29.13■■■□□ 2.25
CLN6-213ENST00000636212 ARHGAP31Q2M1Z3 1444 aa29.12■■■□□ 2.25
CLN6-213ENST00000636212 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.12■■■□□ 2.25
CLN6-213ENST00000636212 POLR1AO95602 1720 aaPredicted RBP29.11■■■□□ 2.25
CLN6-213ENST00000636212 LTBP4Q8N2S1 1624 aa29.11■■■□□ 2.25
CLN6-213ENST00000636212 IQSEC2Q5JU85 1478 aa29.07■■■□□ 2.24
CLN6-213ENST00000636212 ZNF335Q9H4Z2 1342 aaPredicted RBP29.07■■■□□ 2.24
CLN6-213ENST00000636212 CFAP65Q6ZU64 1925 aaKnown RBP29.06■■■□□ 2.24
CLN6-213ENST00000636212 ANKRD50Q9ULJ7 1429 aa29.05■■■□□ 2.24
CLN6-213ENST00000636212 PPARGC1BQ86YN6 1023 aaKnown RBP29.04■■■□□ 2.24
CLN6-213ENST00000636212 LMTK2Q8IWU2 1503 aa29.03■■■□□ 2.24
CLN6-213ENST00000636212 NEURL4Q96JN8 1562 aa29.01■■■□□ 2.24
CLN6-213ENST00000636212 VWDEQ8N2E2 1590 aa29■■■□□ 2.23
CLN6-213ENST00000636212 NPHP4O75161 1426 aaPredicted RBP28.99■■■□□ 2.23
CLN6-213ENST00000636212 STAG3Q9UJ98 1225 aa28.98■■■□□ 2.23
CLN6-213ENST00000636212 ROCK1Q13464 1354 aa28.97■■■□□ 2.23
CLN6-213ENST00000636212 MED14O60244 1454 aa28.97■■■□□ 2.23
CLN6-213ENST00000636212 ITGAEP38570 1179 aa28.96■■■□□ 2.23
CLN6-213ENST00000636212 UBR1Q8IWV7 1749 aa28.96■■■□□ 2.23
CLN6-213ENST00000636212 EFCAB6Q5THR3 1501 aa28.94■■■□□ 2.22
CLN6-213ENST00000636212 EID1Q9Y6B2 187 aa28.92■■■□□ 2.22
CLN6-213ENST00000636212 IQGAP1P46940 1657 aa28.92■■■□□ 2.22
CLN6-213ENST00000636212 CPS1P31327 1500 aa28.9■■■□□ 2.22
CLN6-213ENST00000636212 PIK3C2BO00750 1634 aa28.88■■■□□ 2.21
CLN6-213ENST00000636212 TXNDC2Q86VQ3 553 aa28.88■■■□□ 2.21
CLN6-213ENST00000636212 RPRD2Q5VT52 1461 aaKnown RBP28.88■■■□□ 2.21
CLN6-213ENST00000636212 SCAF11Q99590 1463 aaKnown RBP28.88■■■□□ 2.21
CLN6-213ENST00000636212 UBAP1LF5GYI3 381 aa28.87■■■□□ 2.21
CLN6-213ENST00000636212 SLIT1O75093 1534 aa28.87■■■□□ 2.21
CLN6-213ENST00000636212 IDI1Q13907 227 aa28.86■■■□□ 2.21
CLN6-213ENST00000636212 SLC52A1Q9NWF4 448 aa28.86■■■□□ 2.21
CLN6-213ENST00000636212 UNC13BO14795 1591 aa28.86■■■□□ 2.21
CLN6-213ENST00000636212 NOS1P29475 1434 aa28.86■■■□□ 2.21
CLN6-213ENST00000636212 TET3O43151 1660 aa28.85■■■□□ 2.21
CLN6-213ENST00000636212 ARHGAP23Q9P227 1491 aa28.85■■■□□ 2.21
CLN6-213ENST00000636212 KDM5AP29375 1690 aaKnown RBP28.84■■■□□ 2.21
CLN6-213ENST00000636212 SYNMO15061 1565 aa28.83■■■□□ 2.21
CLN6-213ENST00000636212 TMEM2Q9UHN6 1383 aa28.82■■■□□ 2.2
CLN6-213ENST00000636212 GCC2Q8IWJ2 1684 aa28.81■■■□□ 2.2
CLN6-213ENST00000636212 LTKP29376 864 aa28.8■■■□□ 2.2
CLN6-213ENST00000636212 RRBP1Q9P2E9 1410 aaKnown RBP28.78■■■□□ 2.2
CLN6-213ENST00000636212 ADGRB3O60242 1522 aa28.77■■■□□ 2.2
CLN6-213ENST00000636212 NUP155O75694 1391 aa28.76■■■□□ 2.2
CLN6-213ENST00000636212 TOM1O60784 492 aa28.75■■■□□ 2.19
CLN6-213ENST00000636212 IQGAP3Q86VI3 1631 aa28.75■■■□□ 2.19
CLN6-213ENST00000636212 HDGFP51858 240 aaKnown RBP28.72■■■□□ 2.19
CLN6-213ENST00000636212 SCAF1Q9H7N4 1312 aaKnown RBP28.7■■■□□ 2.19
CLN6-213ENST00000636212 BCANQ96GW7 911 aa28.69■■■□□ 2.18
CLN6-213ENST00000636212 E9PCH4 1651 aa28.69■■■□□ 2.18
CLN6-213ENST00000636212 CHGAP10645 457 aaKnown RBP28.67■■■□□ 2.18
CLN6-213ENST00000636212 PPP1R15AO75807 674 aaPredicted RBP28.65■■■□□ 2.18
CLN6-213ENST00000636212 PIP4K2BP78356 416 aa28.65■■■□□ 2.18
CLN6-213ENST00000636212 LRRC7Q96NW7 1537 aa28.64■■■□□ 2.17
CLN6-213ENST00000636212 STRCP1A6NGW2 1772 aa28.63■■■□□ 2.17
CLN6-213ENST00000636212 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.61■■■□□ 2.17
CLN6-213ENST00000636212 TMEM131LA2VDJ0 1609 aa28.61■■■□□ 2.17
CLN6-213ENST00000636212 SLC26A8Q96RN1 970 aa28.6■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms