RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 TSPY4P0CV99 314 aa37.81■■■■□ 3.64
CPSF1-214ENST00000622776 TSPY10P0CW01 314 aa37.81■■■■□ 3.64
CPSF1-214ENST00000622776 FBXO31Q5XUX0 539 aaPredicted RBP37.81■■■■□ 3.64
CPSF1-214ENST00000622776 ARHGEF5Q12774 1597 aa37.8■■■■□ 3.64
CPSF1-214ENST00000622776 LRRC9Q6ZRR7 1453 aa37.78■■■■□ 3.64
CPSF1-214ENST00000622776 WASHC2CQ9Y4E1 1318 aa37.78■■■■□ 3.64
CPSF1-214ENST00000622776 TNRQ92752 1358 aa37.78■■■■□ 3.64
CPSF1-214ENST00000622776 KDM5DQ9BY66 1539 aa37.77■■■■□ 3.64
CPSF1-214ENST00000622776 FAM135AQ9P2D6 1515 aa37.77■■■■□ 3.64
CPSF1-214ENST00000622776 DNMT1P26358 1616 aaKnown RBP37.76■■■■□ 3.63
CPSF1-214ENST00000622776 PZPP20742 1482 aa37.75■■■■□ 3.63
CPSF1-214ENST00000622776 DISP3Q9P2K9 1392 aa37.74■■■■□ 3.63
CPSF1-214ENST00000622776 KANK4Q5T7N3 995 aaPredicted RBP37.68■■■■□ 3.62
CPSF1-214ENST00000622776 UBAP1LF5GYI3 381 aa37.64■■■■□ 3.62
CPSF1-214ENST00000622776 MAP3K1Q13233 1512 aa37.64■■■■□ 3.62
CPSF1-214ENST00000622776 MIA2Q96PC5 1412 aa37.63■■■■□ 3.61
CPSF1-214ENST00000622776 MAST1Q9Y2H9 1570 aa37.61■■■■□ 3.61
CPSF1-214ENST00000622776 ILDR2Q71H61 639 aa37.58■■■■□ 3.61
CPSF1-214ENST00000622776 THEMISQ8N1K5 641 aaPredicted RBP37.58■■■■□ 3.61
CPSF1-214ENST00000622776 MYOM3Q5VTT5 1437 aa37.58■■■■□ 3.61
CPSF1-214ENST00000622776 NLRP1Q9C000 1473 aa37.58■■■■□ 3.61
CPSF1-214ENST00000622776 ANKLE2Q86XL3 938 aa37.57■■■■□ 3.6
CPSF1-214ENST00000622776 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.56■■■■□ 3.6
CPSF1-214ENST00000622776 NEURL4Q96JN8 1562 aa37.56■■■■□ 3.6
CPSF1-214ENST00000622776 RNF17Q9BXT8 1623 aaKnown RBP37.56■■■■□ 3.6
CPSF1-214ENST00000622776 POLR1AO95602 1720 aaPredicted RBP37.56■■■■□ 3.6
CPSF1-214ENST00000622776 ABCC3O15438 1527 aa37.52■■■■□ 3.6
CPSF1-214ENST00000622776 UGGT1Q9NYU2 1555 aa37.51■■■■□ 3.6
CPSF1-214ENST00000622776 SPATA31D1Q6ZQQ2 1576 aa37.51■■■■□ 3.59
CPSF1-214ENST00000622776 EIF2AK4Q9P2K8 1649 aaKnown RBP37.48■■■■□ 3.59
CPSF1-214ENST00000622776 SHANK2Q9UPX8 1470 aa37.46■■■■□ 3.59
CPSF1-214ENST00000622776 ZC3H13Q5T200 1668 aaKnown RBP37.46■■■■□ 3.59
CPSF1-214ENST00000622776 CPS1P31327 1500 aa37.45■■■■□ 3.59
CPSF1-214ENST00000622776 MROH1Q8NDA8 1641 aa37.43■■■■□ 3.58
CPSF1-214ENST00000622776 MED14O60244 1454 aa37.42■■■■□ 3.58
CPSF1-214ENST00000622776 NPHP4O75161 1426 aaPredicted RBP37.42■■■■□ 3.58
CPSF1-214ENST00000622776 DUOX2Q9NRD8 1548 aa37.41■■■■□ 3.58
CPSF1-214ENST00000622776 ERVK-7P63135 1459 aa37.41■■■■□ 3.58
CPSF1-214ENST00000622776 DEPDC5O75140 1603 aa37.39■■■■□ 3.58
CPSF1-214ENST00000622776 SOCS7O14512 581 aa37.37■■■■□ 3.57
CPSF1-214ENST00000622776 APLP2Q06481 763 aa37.37■■■■□ 3.57
CPSF1-214ENST00000622776 VWDEQ8N2E2 1590 aa37.37■■■■□ 3.57
CPSF1-214ENST00000622776 KIF15Q9NS87 1388 aa37.36■■■■□ 3.57
CPSF1-214ENST00000622776 TOM1O60784 492 aa37.35■■■■□ 3.57
CPSF1-214ENST00000622776 ABCC5O15440 1437 aa37.35■■■■□ 3.57
CPSF1-214ENST00000622776 CEP152O94986 1710 aa37.33■■■■□ 3.57
CPSF1-214ENST00000622776 CFAP65Q6ZU64 1925 aaKnown RBP37.33■■■■□ 3.57
CPSF1-214ENST00000622776 SCAF1Q9H7N4 1312 aaKnown RBP37.33■■■■□ 3.57
CPSF1-214ENST00000622776 RRP7BPQ9NSQ0 103 aa37.32■■■■□ 3.56
CPSF1-214ENST00000622776 PIP4K2BP78356 416 aa37.31■■■■□ 3.56
CPSF1-214ENST00000622776 PTPN23Q9H3S7 1636 aa37.29■■■■□ 3.56
CPSF1-214ENST00000622776 IQGAP1P46940 1657 aa37.29■■■■□ 3.56
CPSF1-214ENST00000622776 ERBINQ96RT1 1412 aa37.28■■■■□ 3.56
CPSF1-214ENST00000622776 HSPA1LP34931 641 aa37.26■■■■□ 3.56
CPSF1-214ENST00000622776 CROCC2H7BZ55 1655 aa37.25■■■■□ 3.55
CPSF1-214ENST00000622776 ARHGAP31Q2M1Z3 1444 aa37.25■■■■□ 3.55
CPSF1-214ENST00000622776 PRDM15P57071 1507 aaPredicted RBP37.25■■■■□ 3.55
CPSF1-214ENST00000622776 DAPK1P53355 1430 aa37.24■■■■□ 3.55
CPSF1-214ENST00000622776 FGD6Q6ZV73 1430 aa37.22■■■■□ 3.55
CPSF1-214ENST00000622776 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.22■■■■□ 3.551e-6■■□□□ 11.7
CPSF1-214ENST00000622776 UBR1Q8IWV7 1749 aa37.21■■■■□ 3.55
CPSF1-214ENST00000622776 SCAF11Q99590 1463 aaKnown RBP37.17■■■■□ 3.54
CPSF1-214ENST00000622776 CHIC2Q9UKJ5 165 aa37.16■■■■□ 3.54
CPSF1-214ENST00000622776 KANK1Q14678 1352 aa37.16■■■■□ 3.54
CPSF1-214ENST00000622776 LTKP29376 864 aa37.15■■■■□ 3.54
CPSF1-214ENST00000622776 TXNDC2Q86VQ3 553 aa37.14■■■■□ 3.54
CPSF1-214ENST00000622776 ANKRD30AQ9BXX3 1397 aa37.14■■■■□ 3.54
CPSF1-214ENST00000622776 STRCP1A6NGW2 1772 aa37.14■■■■□ 3.54
CPSF1-214ENST00000622776 ARHGAP23Q9P227 1491 aa37.13■■■■□ 3.54
CPSF1-214ENST00000622776 LRRC7Q96NW7 1537 aa37.13■■■■□ 3.53
CPSF1-214ENST00000622776 SLIT1O75093 1534 aa37.12■■■■□ 3.53
CPSF1-214ENST00000622776 ALKQ9UM73 1620 aa37.11■■■■□ 3.53
CPSF1-214ENST00000622776 EID1Q9Y6B2 187 aa37.08■■■■□ 3.53
CPSF1-214ENST00000622776 SYNMO15061 1565 aa37.05■■■■□ 3.52
CPSF1-214ENST00000622776 STAG3Q9UJ98 1225 aa37.04■■■■□ 3.52
CPSF1-214ENST00000622776 LMTK2Q8IWU2 1503 aa37.04■■■■□ 3.52
CPSF1-214ENST00000622776 PIK3C2BO00750 1634 aa37.03■■■■□ 3.52
CPSF1-214ENST00000622776 TMEM2Q9UHN6 1383 aa37.02■■■■□ 3.52
CPSF1-214ENST00000622776 MED1Q15648 1581 aaPredicted RBP37.01■■■■□ 3.52
CPSF1-214ENST00000622776 IDI1Q13907 227 aa37■■■■□ 3.51
CPSF1-214ENST00000622776 ADGRL2O95490 1459 aa36.96■■■■□ 3.51
CPSF1-214ENST00000622776 FAM50AQ14320 339 aaKnown RBP36.95■■■■□ 3.51
CPSF1-214ENST00000622776 EFCAB6Q5THR3 1501 aa36.94■■■■□ 3.5
CPSF1-214ENST00000622776 NOS1P29475 1434 aa36.92■■■■□ 3.5
CPSF1-214ENST00000622776 KDM5AP29375 1690 aaKnown RBP36.91■■■■□ 3.5
CPSF1-214ENST00000622776 SENP3Q9H4L4 574 aaPredicted RBP36.91■■■■□ 3.5
CPSF1-214ENST00000622776 ANKRD50Q9ULJ7 1429 aa36.85■■■■□ 3.49
CPSF1-214ENST00000622776 SLC52A1Q9NWF4 448 aa36.85■■■■□ 3.49
CPSF1-214ENST00000622776 XIRP1Q702N8 1843 aaKnown RBP36.83■■■■□ 3.49
CPSF1-214ENST00000622776 KCNA6P17658 529 aa36.81■■■■□ 3.48
CPSF1-214ENST00000622776 SLC26A8Q96RN1 970 aa36.81■■■■□ 3.48
CPSF1-214ENST00000622776 PHF23Q9BUL5 403 aaPredicted RBP36.81■■■■□ 3.48
CPSF1-214ENST00000622776 ADGRB3O60242 1522 aa36.8■■■■□ 3.48
CPSF1-214ENST00000622776 TET3O43151 1660 aa36.79■■■■□ 3.48
CPSF1-214ENST00000622776 RPRD2Q5VT52 1461 aaKnown RBP36.78■■■■□ 3.48
CPSF1-214ENST00000622776 TMEM94Q12767 1356 aa36.78■■■■□ 3.48
CPSF1-214ENST00000622776 PROSER2Q86WR7 435 aaPredicted RBP36.72■■■■□ 3.47
CPSF1-214ENST00000622776 BCANQ96GW7 911 aa36.71■■■■□ 3.47
CPSF1-214ENST00000622776 FAM135BQ49AJ0 1406 aa36.7■■■■□ 3.47
CPSF1-214ENST00000622776 RBM33Q96EV2 1170 aaKnown RBP36.67■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms