RNA–Protein interactions for RNA: ENST00000622633.4

LITAF-221, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-221ENST00000622633 NUP160Q12769 1436 aa16.66■□□□□ 0.26
LITAF-221ENST00000622633 IPO9Q96P70 1041 aaKnown RBP16.65■□□□□ 0.26
LITAF-221ENST00000622633 ATP10BO94823 1461 aa16.65■□□□□ 0.26
LITAF-221ENST00000622633 TSPY4P0CV99 314 aa16.64■□□□□ 0.26
LITAF-221ENST00000622633 TSPY10P0CW01 314 aa16.64■□□□□ 0.26
LITAF-221ENST00000622633 KDM2AQ9Y2K7 1162 aa16.64■□□□□ 0.26
LITAF-221ENST00000622633 HNRNPMP52272 730 aaKnown RBP eCLIP16.64■□□□□ 0.251e-6■■■□□ 15.6
LITAF-221ENST00000622633 C9orf84Q5VXU9 1444 aa16.64■□□□□ 0.25
LITAF-221ENST00000622633 CROCC2H7BZ55 1655 aa16.64■□□□□ 0.25
LITAF-221ENST00000622633 BCORL1Q5H9F3 1711 aa16.64■□□□□ 0.25
LITAF-221ENST00000622633 POLR1AO95602 1720 aaPredicted RBP16.63■□□□□ 0.25
LITAF-221ENST00000622633 B4GALNT3Q6L9W6 998 aa16.63■□□□□ 0.25
LITAF-221ENST00000622633 CARD11Q9BXL7 1154 aa16.63■□□□□ 0.25
LITAF-221ENST00000622633 ABCC10Q5T3U5 1492 aa16.62■□□□□ 0.25
LITAF-221ENST00000622633 BCL11BQ9C0K0 894 aaPredicted RBP16.61■□□□□ 0.25
LITAF-221ENST00000622633 ZBTB47Q9UFB7 747 aaPredicted RBP16.61■□□□□ 0.25
LITAF-221ENST00000622633 SENP3-EIF4A1A0A087X0R7 540 aa16.6■□□□□ 0.25
LITAF-221ENST00000622633 ABCA8O94911 1581 aa16.6■□□□□ 0.25
LITAF-221ENST00000622633 USP35Q9P2H5 1018 aa16.6■□□□□ 0.25
LITAF-221ENST00000622633 UHRF1BP1Q6BDS2 1440 aa16.59■□□□□ 0.25
LITAF-221ENST00000622633 ARID4BQ4LE39 1312 aaPredicted RBP16.59■□□□□ 0.25
LITAF-221ENST00000622633 CDC42BPAQ5VT25 1732 aa16.59■□□□□ 0.25
LITAF-221ENST00000622633 KDM5CP41229 1560 aa16.59■□□□□ 0.25
LITAF-221ENST00000622633 DCAF11Q8TEB1 546 aa16.58■□□□□ 0.25
LITAF-221ENST00000622633 KIF15Q9NS87 1388 aa16.58■□□□□ 0.24
LITAF-221ENST00000622633 ST20-MTHFSA0A0A6YYL1 179 aa16.58■□□□□ 0.24
LITAF-221ENST00000622633 SHANK2Q9UPX8 1470 aa16.57■□□□□ 0.24
LITAF-221ENST00000622633 NEFMP07197 916 aa16.57■□□□□ 0.24
LITAF-221ENST00000622633 RALGAPBQ86X10 1494 aa16.57■□□□□ 0.24
LITAF-221ENST00000622633 FAM43AQ8N2R8 423 aa16.56■□□□□ 0.24
LITAF-221ENST00000622633 TMC1Q8TDI8 760 aa16.55■□□□□ 0.24
LITAF-221ENST00000622633 PNISRQ8TF01 805 aaKnown RBP16.55■□□□□ 0.24
LITAF-221ENST00000622633 SMG6Q86US8 1419 aaKnown RBP16.55■□□□□ 0.24
LITAF-221ENST00000622633 ROCK2O75116 1388 aaKnown RBP16.54■□□□□ 0.24
LITAF-221ENST00000622633 ANP32AP39687 249 aaKnown RBP16.54■□□□□ 0.24
LITAF-221ENST00000622633 NUDCQ9Y266 331 aa16.54■□□□□ 0.24
LITAF-221ENST00000622633 PTPRGP23470 1445 aa16.52■□□□□ 0.24
LITAF-221ENST00000622633 KDM5DQ9BY66 1539 aa16.51■□□□□ 0.23
LITAF-221ENST00000622633 ARHGEF12Q9NZN5 1544 aa16.51■□□□□ 0.23
LITAF-221ENST00000622633 HSP90AA2PQ14568 343 aaPredicted RBP16.5■□□□□ 0.23
LITAF-221ENST00000622633 RGL3Q3MIN7 710 aa16.49■□□□□ 0.23
LITAF-221ENST00000622633 RRP9O43818 475 aaKnown RBP16.48■□□□□ 0.23
LITAF-221ENST00000622633 GSE1Q14687 1217 aa16.48■□□□□ 0.23
LITAF-221ENST00000622633 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.47■□□□□ 0.23
LITAF-221ENST00000622633 ARHGEF5Q12774 1597 aa16.47■□□□□ 0.23
LITAF-221ENST00000622633 RNF123Q5XPI4 1314 aa16.47■□□□□ 0.23
LITAF-221ENST00000622633 CCDC141Q6ZP82 1450 aa16.47■□□□□ 0.23
LITAF-221ENST00000622633 RALBP1Q15311 655 aa16.45■□□□□ 0.22
LITAF-221ENST00000622633 RSPH4AQ5TD94 716 aa16.45■□□□□ 0.22
LITAF-221ENST00000622633 FAM135AQ9P2D6 1515 aa16.45■□□□□ 0.22
LITAF-221ENST00000622633 MYBBP1AQ9BQG0 1328 aaKnown RBP16.45■□□□□ 0.22
LITAF-221ENST00000622633 NBPF1Q3BBV0 1214 aa16.45■□□□□ 0.22
LITAF-221ENST00000622633 SAMD9LQ8IVG5 1584 aa16.45■□□□□ 0.22
LITAF-221ENST00000622633 LAS1LQ9Y4W2 734 aaKnown RBP16.44■□□□□ 0.22
LITAF-221ENST00000622633 BRD4O60885 1362 aaPredicted RBP16.43■□□□□ 0.22
LITAF-221ENST00000622633 CCDC144AA2RUR9 1427 aa16.43■□□□□ 0.22
LITAF-221ENST00000622633 LRPPRCP42704 1394 aaKnown RBP16.42■□□□□ 0.22
LITAF-221ENST00000622633 CDC42BPBQ9Y5S2 1711 aa16.41■□□□□ 0.22
LITAF-221ENST00000622633 PRAG1Q86YV5 1406 aa16.41■□□□□ 0.22
LITAF-221ENST00000622633 PLA2R1Q13018 1463 aa16.4■□□□□ 0.22
LITAF-221ENST00000622633 KTN1Q86UP2 1357 aaKnown RBP16.39■□□□□ 0.21
LITAF-221ENST00000622633 PREX2Q70Z35 1606 aa16.39■□□□□ 0.21
LITAF-221ENST00000622633 SYCP2Q9BX26 1530 aa16.39■□□□□ 0.21
LITAF-221ENST00000622633 ARHGAP5Q13017 1502 aa16.38■□□□□ 0.21
LITAF-221ENST00000622633 FRAT1Q92837 279 aaPredicted RBP16.37■□□□□ 0.21
LITAF-221ENST00000622633 NLRP13Q86W25 1043 aa16.37■□□□□ 0.21
LITAF-221ENST00000622633 KLHL34Q8N239 644 aa16.37■□□□□ 0.21
LITAF-221ENST00000622633 PRDM4Q9UKN5 801 aa16.37■□□□□ 0.21
LITAF-221ENST00000622633 PER1O15534 1290 aaPredicted RBP16.36■□□□□ 0.21
LITAF-221ENST00000622633 PLEKHH2Q8IVE3 1493 aa16.36■□□□□ 0.21
LITAF-221ENST00000622633 PPM1GO15355 546 aaPredicted RBP16.36■□□□□ 0.21
LITAF-221ENST00000622633 A2MP01023 1474 aa16.35■□□□□ 0.21
LITAF-221ENST00000622633 PARD3Q8TEW0 1356 aa16.35■□□□□ 0.21
LITAF-221ENST00000622633 TRPM1Q7Z4N2 1603 aa16.35■□□□□ 0.21
LITAF-221ENST00000622633 TTC37Q6PGP7 1564 aa16.34■□□□□ 0.21
LITAF-221ENST00000622633 TAF7LQ5H9L4 462 aa16.34■□□□□ 0.21
LITAF-221ENST00000622633 CC2D1BQ5T0F9 858 aaKnown RBP16.34■□□□□ 0.21
LITAF-221ENST00000622633 TESK2Q96S53 571 aa16.34■□□□□ 0.21
LITAF-221ENST00000622633 E9PCH4 1651 aa16.34■□□□□ 0.21
LITAF-221ENST00000622633 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.34■□□□□ 0.21
LITAF-221ENST00000622633 GPRASP1Q5JY77 1395 aa16.33■□□□□ 0.21
LITAF-221ENST00000622633 DISP3Q9P2K9 1392 aa16.33■□□□□ 0.21
LITAF-221ENST00000622633 HSP90AA1P07900 732 aaKnown RBP16.33■□□□□ 0.2
LITAF-221ENST00000622633 RRAGDQ9NQL2 400 aaPredicted RBP16.33■□□□□ 0.2
LITAF-221ENST00000622633 PANK3Q9H999 370 aa16.32■□□□□ 0.2
LITAF-221ENST00000622633 RRP1P56182 461 aaKnown RBP16.31■□□□□ 0.2
LITAF-221ENST00000622633 RCAN3Q9UKA8 241 aa16.31■□□□□ 0.2
LITAF-221ENST00000622633 UNC13BO14795 1591 aa16.31■□□□□ 0.2
LITAF-221ENST00000622633 MAST1Q9Y2H9 1570 aa16.31■□□□□ 0.2
LITAF-221ENST00000622633 EXOC6Q8TAG9 804 aa16.29■□□□□ 0.2
LITAF-221ENST00000622633 CDCA7LQ96GN5 454 aa16.29■□□□□ 0.2
LITAF-221ENST00000622633 COL17A1Q9UMD9 1497 aaPredicted RBP16.28■□□□□ 0.2
LITAF-221ENST00000622633 ERBINQ96RT1 1412 aa16.28■□□□□ 0.2
LITAF-221ENST00000622633 ERCC6L2Q5T890 1561 aa16.28■□□□□ 0.2
LITAF-221ENST00000622633 TMF1P82094 1093 aa16.27■□□□□ 0.2
LITAF-221ENST00000622633 PDE3BQ13370 1112 aa16.26■□□□□ 0.19
LITAF-221ENST00000622633 CHD1O14646 1710 aa16.26■□□□□ 0.19
LITAF-221ENST00000622633 IQGAP3Q86VI3 1631 aa16.26■□□□□ 0.19
LITAF-221ENST00000622633 PRDM15P57071 1507 aaPredicted RBP16.26■□□□□ 0.19
LITAF-221ENST00000622633 EFCAB2Q5VUJ9 269 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms