RNA–Protein interactions for RNA: ENST00000622633.4

LITAF-221, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-221ENST00000622633 NISCHQ9Y2I1 1504 aa25.06■■□□□ 1.6
LITAF-221ENST00000622633 PELP1Q8IZL8 1130 aaKnown RBP21.57■■□□□ 1.04
LITAF-221ENST00000622633 SHROOM4Q9ULL8 1493 aa21.53■■□□□ 1.04
LITAF-221ENST00000622633 ZCCHC6Q5VYS8 1495 aaKnown RBP21.19■□□□□ 0.98
LITAF-221ENST00000622633 CCDC180Q9P1Z9 1646 aa21.18■□□□□ 0.98
LITAF-221ENST00000622633 SUPT5HO00267 1087 aaKnown RBP21.17■□□□□ 0.98
LITAF-221ENST00000622633 MYT1Q01538 1121 aa21.04■□□□□ 0.96
LITAF-221ENST00000622633 DCAF8L2P0C7V8 631 aa20.92■□□□□ 0.94
LITAF-221ENST00000622633 HRCP23327 699 aa20.71■□□□□ 0.91
LITAF-221ENST00000622633 CHIC1Q5VXU3 224 aa20.59■□□□□ 0.89
LITAF-221ENST00000622633 DCAF1Q9Y4B6 1507 aa20.51■□□□□ 0.87
LITAF-221ENST00000622633 MYO15BQ96JP2 1530 aa20.49■□□□□ 0.87
LITAF-221ENST00000622633 PPARGC1BQ86YN6 1023 aaKnown RBP20.22■□□□□ 0.83
LITAF-221ENST00000622633 SCAF1Q9H7N4 1312 aaKnown RBP20.22■□□□□ 0.83
LITAF-221ENST00000622633 TTBK1Q5TCY1 1321 aaPredicted RBP20.12■□□□□ 0.81
LITAF-221ENST00000622633 PCGF6Q9BYE7 350 aa20.05■□□□□ 0.8
LITAF-221ENST00000622633 LOC105371045A0A1W2PR82 267 aa20.03■□□□□ 0.8
LITAF-221ENST00000622633 ABCC9O60706 1549 aa19.98■□□□□ 0.79
LITAF-221ENST00000622633 SCRIBQ14160 1630 aa19.96■□□□□ 0.79
LITAF-221ENST00000622633 RSF1Q96T23 1441 aaPredicted RBP19.9■□□□□ 0.78
LITAF-221ENST00000622633 PRKCSHP14314 528 aaPredicted RBP19.73■□□□□ 0.75
LITAF-221ENST00000622633 TRIM41Q8WV44 630 aa19.69■□□□□ 0.74
LITAF-221ENST00000622633 RB1CC1Q8TDY2 1594 aa19.66■□□□□ 0.74
LITAF-221ENST00000622633 NACADO15069 1562 aa19.62■□□□□ 0.73
LITAF-221ENST00000622633 TRIM26Q12899 539 aaPredicted RBP19.61■□□□□ 0.73
LITAF-221ENST00000622633 CECR2Q9BXF3 1484 aa19.6■□□□□ 0.73
LITAF-221ENST00000622633 BCL11AQ9H165 835 aa19.6■□□□□ 0.73
LITAF-221ENST00000622633 FAM9AQ8IZU1 332 aaPredicted RBP19.58■□□□□ 0.73
LITAF-221ENST00000622633 MROH2BQ7Z745 1585 aa19.51■□□□□ 0.71
LITAF-221ENST00000622633 EHMT2Q96KQ7 1210 aa19.44■□□□□ 0.7
LITAF-221ENST00000622633 WIZO95785 1651 aa19.39■□□□□ 0.69
LITAF-221ENST00000622633 ACIN1Q9UKV3 1341 aaKnown RBP19.35■□□□□ 0.69
LITAF-221ENST00000622633 NEUROD1Q13562 356 aa19.26■□□□□ 0.67
LITAF-221ENST00000622633 BAZ1AQ9NRL2 1556 aaPredicted RBP19.23■□□□□ 0.67
LITAF-221ENST00000622633 GTF3C3Q9Y5Q9 886 aa19.23■□□□□ 0.67
LITAF-221ENST00000622633 CENPBP07199 599 aaPredicted RBP19.19■□□□□ 0.66
LITAF-221ENST00000622633 ZEB1P37275 1124 aaPredicted RBP19.19■□□□□ 0.66
LITAF-221ENST00000622633 ERICH6Q7L0X2 663 aa19.15■□□□□ 0.66
LITAF-221ENST00000622633 APLP2Q06481 763 aa19.14■□□□□ 0.66
LITAF-221ENST00000622633 EIF4G1Q04637 1599 aaKnown RBP19.11■□□□□ 0.65
LITAF-221ENST00000622633 TOP2AP11388 1531 aaKnown RBP19.07■□□□□ 0.64
LITAF-221ENST00000622633 SMARCA4P51532 1647 aa19.05■□□□□ 0.64
LITAF-221ENST00000622633 CCDC88BA6NC98 1476 aa19.05■□□□□ 0.64
LITAF-221ENST00000622633 ABCC8Q09428 1581 aa19.01■□□□□ 0.63
LITAF-221ENST00000622633 SMARCA2P51531 1590 aa18.97■□□□□ 0.63
LITAF-221ENST00000622633 UNC13AQ9UPW8 1703 aa18.96■□□□□ 0.63
LITAF-221ENST00000622633 PABPN1Q86U42 306 aaKnown RBP eCLIP18.94■□□□□ 0.62
LITAF-221ENST00000622633 SOGA1O94964 1423 aa18.88■□□□□ 0.61
LITAF-221ENST00000622633 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.85■□□□□ 0.61
LITAF-221ENST00000622633 ANP32EQ9BTT0 268 aa18.85■□□□□ 0.61
LITAF-221ENST00000622633 CCER1Q8TC90 406 aaPredicted RBP18.8■□□□□ 0.6
LITAF-221ENST00000622633 CSRNP3Q8WYN3 585 aa18.8■□□□□ 0.6
LITAF-221ENST00000622633 CEP162Q5TB80 1403 aa18.8■□□□□ 0.6
LITAF-221ENST00000622633 RUSC2Q8N2Y8 1516 aa18.79■□□□□ 0.6
LITAF-221ENST00000622633 BICRAQ9NZM4 1560 aa18.78■□□□□ 0.6
LITAF-221ENST00000622633 TNIKQ9UKE5 1360 aa18.77■□□□□ 0.6
LITAF-221ENST00000622633 WRNQ14191 1432 aaPredicted RBP eCLIP18.76■□□□□ 0.59
LITAF-221ENST00000622633 UBTFP17480 764 aaKnown RBP18.76■□□□□ 0.59
LITAF-221ENST00000622633 EEA1Q15075 1411 aa18.72■□□□□ 0.59
LITAF-221ENST00000622633 PEG3Q9GZU2 1588 aa18.65■□□□□ 0.58
LITAF-221ENST00000622633 GOLGA3Q08378 1498 aa18.62■□□□□ 0.57
LITAF-221ENST00000622633 ATAD2BQ9ULI0 1458 aa18.59■□□□□ 0.57
LITAF-221ENST00000622633 SYNJ1O43426 1573 aa18.56■□□□□ 0.56
LITAF-221ENST00000622633 BAZ1BQ9UIG0 1483 aaKnown RBP18.53■□□□□ 0.56
LITAF-221ENST00000622633 CEP164Q9UPV0 1460 aa18.5■□□□□ 0.55
LITAF-221ENST00000622633 DIEXFQ68CQ4 756 aaKnown RBP18.45■□□□□ 0.54
LITAF-221ENST00000622633 CLIP1P30622 1438 aa18.45■□□□□ 0.54
LITAF-221ENST00000622633 KIF21BO75037 1637 aa18.44■□□□□ 0.54
LITAF-221ENST00000622633 RANGAP1P46060 587 aaPredicted RBP18.42■□□□□ 0.54
LITAF-221ENST00000622633 HNRNPUL2Q1KMD3 747 aaKnown RBP18.4■□□□□ 0.54
LITAF-221ENST00000622633 RAPGEF2Q9Y4G8 1499 aa18.4■□□□□ 0.54
LITAF-221ENST00000622633 VPS8Q8N3P4 1428 aa18.35■□□□□ 0.53
LITAF-221ENST00000622633 ZNF316A6NFI3 1004 aaPredicted RBP18.3■□□□□ 0.52
LITAF-221ENST00000622633 TSHZ2Q9NRE2 1034 aa18.3■□□□□ 0.52
LITAF-221ENST00000622633 TOP2BQ02880 1626 aa18.3■□□□□ 0.52
LITAF-221ENST00000622633 SLC24A1O60721 1099 aa18.28■□□□□ 0.52
LITAF-221ENST00000622633 ANO8Q9HCE9 1232 aaPredicted RBP18.27■□□□□ 0.51
LITAF-221ENST00000622633 BIVM-ERCC5R4GMW8 1640 aa18.21■□□□□ 0.5
LITAF-221ENST00000622633 NCAPD3P42695 1498 aa18.2■□□□□ 0.5
LITAF-221ENST00000622633 PRXQ9BXM0 1461 aa18.19■□□□□ 0.5
LITAF-221ENST00000622633 YTHDC1Q96MU7 727 aaKnown RBP18.16■□□□□ 0.5
LITAF-221ENST00000622633 CUX1P39880 1505 aa18.15■□□□□ 0.5
LITAF-221ENST00000622633 HMGXB3Q12766 1538 aa18.15■□□□□ 0.5
LITAF-221ENST00000622633 ERICH3Q5RHP9 1530 aa18.14■□□□□ 0.49
LITAF-221ENST00000622633 ARAP1Q96P48 1450 aa18.12■□□□□ 0.49
LITAF-221ENST00000622633 KANK4Q5T7N3 995 aaPredicted RBP18.11■□□□□ 0.49
LITAF-221ENST00000622633 KIF27Q86VH2 1401 aa18.1■□□□□ 0.49
LITAF-221ENST00000622633 CFTRP13569 1480 aa18.07■□□□□ 0.48
LITAF-221ENST00000622633 MIER1Q8N108 512 aa18.07■□□□□ 0.48
LITAF-221ENST00000622633 UBE2Q2Q8WVN8 375 aa18.07■□□□□ 0.48
LITAF-221ENST00000622633 SUPT16HQ9Y5B9 1047 aaKnown RBP18.06■□□□□ 0.48
LITAF-221ENST00000622633 DHX57Q6P158 1386 aaKnown RBP17.98■□□□□ 0.47
LITAF-221ENST00000622633 EIF5BO60841 1220 aaKnown RBP17.98■□□□□ 0.47
LITAF-221ENST00000622633 ARHGAP35Q9NRY4 1499 aa17.96■□□□□ 0.47
LITAF-221ENST00000622633 CLSPNQ9HAW4 1339 aa17.94■□□□□ 0.46
LITAF-221ENST00000622633 IGF1RP08069 1367 aa17.93■□□□□ 0.46
LITAF-221ENST00000622633 RRBP1Q9P2E9 1410 aaKnown RBP17.93■□□□□ 0.46
LITAF-221ENST00000622633 CUX2O14529 1486 aa17.93■□□□□ 0.46
LITAF-221ENST00000622633 SALL2Q9Y467 1007 aaPredicted RBP17.92■□□□□ 0.46
LITAF-221ENST00000622633 ITGAEP38570 1179 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms