RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 A2ML1A8K2U0 1454 aa39.62■■■■□ 3.93
PTPRF-216ENST00000617451 TSPY4P0CV99 314 aa39.61■■■■□ 3.93
PTPRF-216ENST00000617451 TSPY10P0CW01 314 aa39.61■■■■□ 3.93
PTPRF-216ENST00000617451 FAM135AQ9P2D6 1515 aa39.6■■■■□ 3.93
PTPRF-216ENST00000617451 KDM5DQ9BY66 1539 aa39.59■■■■□ 3.93
PTPRF-216ENST00000617451 ZNF335Q9H4Z2 1342 aaPredicted RBP39.59■■■■□ 3.93
PTPRF-216ENST00000617451 FBXO31Q5XUX0 539 aaPredicted RBP39.58■■■■□ 3.93
PTPRF-216ENST00000617451 WASHC2CQ9Y4E1 1318 aa39.57■■■■□ 3.92
PTPRF-216ENST00000617451 PZPP20742 1482 aa39.56■■■■□ 3.92
PTPRF-216ENST00000617451 DNMT1P26358 1616 aaKnown RBP39.55■■■■□ 3.92
PTPRF-216ENST00000617451 TNRQ92752 1358 aa39.55■■■■□ 3.92
PTPRF-216ENST00000617451 MAP3K1Q13233 1512 aa39.51■■■■□ 3.92
PTPRF-216ENST00000617451 KANK4Q5T7N3 995 aaPredicted RBP39.51■■■■□ 3.92
PTPRF-216ENST00000617451 MAST1Q9Y2H9 1570 aa39.45■■■■□ 3.91
PTPRF-216ENST00000617451 MIA2Q96PC5 1412 aa39.42■■■■□ 3.9
PTPRF-216ENST00000617451 MYOM3Q5VTT5 1437 aa39.41■■■■□ 3.9
PTPRF-216ENST00000617451 DISP3Q9P2K9 1392 aa39.41■■■■□ 3.9
PTPRF-216ENST00000617451 RNF17Q9BXT8 1623 aaKnown RBP39.37■■■■□ 3.89
PTPRF-216ENST00000617451 NLRP1Q9C000 1473 aa39.37■■■■□ 3.89
PTPRF-216ENST00000617451 UBAP1LF5GYI3 381 aa39.36■■■■□ 3.89
PTPRF-216ENST00000617451 THEMISQ8N1K5 641 aaPredicted RBP39.35■■■■□ 3.89
PTPRF-216ENST00000617451 NEURL4Q96JN8 1562 aa39.34■■■■□ 3.89
PTPRF-216ENST00000617451 POLR1AO95602 1720 aaPredicted RBP39.34■■■■□ 3.89
PTPRF-216ENST00000617451 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP39.33■■■■□ 3.899e-9■□□□□ 10.3
PTPRF-216ENST00000617451 ABCC3O15438 1527 aa39.32■■■■□ 3.89
PTPRF-216ENST00000617451 ANKLE2Q86XL3 938 aa39.32■■■■□ 3.89
PTPRF-216ENST00000617451 EIF2AK4Q9P2K8 1649 aaKnown RBP39.3■■■■□ 3.88
PTPRF-216ENST00000617451 UGGT1Q9NYU2 1555 aa39.29■■■■□ 3.88
PTPRF-216ENST00000617451 ZC3H13Q5T200 1668 aaKnown RBP39.27■■■■□ 3.88
PTPRF-216ENST00000617451 ILDR2Q71H61 639 aa39.25■■■■□ 3.87
PTPRF-216ENST00000617451 MROH1Q8NDA8 1641 aa39.24■■■■□ 3.87
PTPRF-216ENST00000617451 SPATA31D1Q6ZQQ2 1576 aa39.23■■■■□ 3.87
PTPRF-216ENST00000617451 DUOX2Q9NRD8 1548 aa39.22■■■■□ 3.87
PTPRF-216ENST00000617451 SHANK2Q9UPX8 1470 aa39.22■■■■□ 3.87
PTPRF-216ENST00000617451 CPS1P31327 1500 aa39.2■■■■□ 3.87
PTPRF-216ENST00000617451 MED14O60244 1454 aa39.2■■■■□ 3.87
PTPRF-216ENST00000617451 ERVK-7P63135 1459 aa39.19■■■■□ 3.86
PTPRF-216ENST00000617451 DEPDC5O75140 1603 aa39.18■■■■□ 3.86
PTPRF-216ENST00000617451 NPHP4O75161 1426 aaPredicted RBP39.17■■■■□ 3.86
PTPRF-216ENST00000617451 ABCC5O15440 1437 aa39.16■■■■□ 3.86
PTPRF-216ENST00000617451 APLP2Q06481 763 aa39.16■■■■□ 3.86
PTPRF-216ENST00000617451 KIF15Q9NS87 1388 aa39.15■■■■□ 3.86
PTPRF-216ENST00000617451 VWDEQ8N2E2 1590 aa39.13■■■■□ 3.85
PTPRF-216ENST00000617451 CEP152O94986 1710 aa39.12■■■■□ 3.85
PTPRF-216ENST00000617451 PTPN23Q9H3S7 1636 aa39.12■■■■□ 3.85
PTPRF-216ENST00000617451 RRP7BPQ9NSQ0 103 aa39.1■■■■□ 3.85
PTPRF-216ENST00000617451 ERBINQ96RT1 1412 aa39.09■■■■□ 3.85
PTPRF-216ENST00000617451 CROCC2H7BZ55 1655 aa39.09■■■■□ 3.85
PTPRF-216ENST00000617451 PRDM15P57071 1507 aaPredicted RBP39.06■■■■□ 3.84
PTPRF-216ENST00000617451 TOM1O60784 492 aa39.06■■■■□ 3.84
PTPRF-216ENST00000617451 IQGAP1P46940 1657 aa39.06■■■■□ 3.84
PTPRF-216ENST00000617451 DAPK1P53355 1430 aa39.06■■■■□ 3.84
PTPRF-216ENST00000617451 ARHGAP31Q2M1Z3 1444 aa39.05■■■■□ 3.84
PTPRF-216ENST00000617451 FGD6Q6ZV73 1430 aa39.05■■■■□ 3.84
PTPRF-216ENST00000617451 CFAP65Q6ZU64 1925 aaKnown RBP39.04■■■■□ 3.84
PTPRF-216ENST00000617451 SOCS7O14512 581 aa39.03■■■■□ 3.84
PTPRF-216ENST00000617451 PIP4K2BP78356 416 aa39.01■■■■□ 3.84
PTPRF-216ENST00000617451 SCAF1Q9H7N4 1312 aaKnown RBP39■■■■□ 3.83
PTPRF-216ENST00000617451 UBR1Q8IWV7 1749 aa39■■■■□ 3.83
PTPRF-216ENST00000617451 GRWD1Q9BQ67 446 aaKnown RBP eCLIP38.98■■■■□ 3.83
PTPRF-216ENST00000617451 HSPA1LP34931 641 aa38.96■■■■□ 3.83
PTPRF-216ENST00000617451 ANKRD30AQ9BXX3 1397 aa38.93■■■■□ 3.82
PTPRF-216ENST00000617451 SCAF11Q99590 1463 aaKnown RBP38.92■■■■□ 3.82
PTPRF-216ENST00000617451 CHIC2Q9UKJ5 165 aa38.92■■■■□ 3.82
PTPRF-216ENST00000617451 KANK1Q14678 1352 aa38.92■■■■□ 3.82
PTPRF-216ENST00000617451 ARHGAP23Q9P227 1491 aa38.92■■■■□ 3.82
PTPRF-216ENST00000617451 LTKP29376 864 aa38.9■■■■□ 3.82
PTPRF-216ENST00000617451 STRCP1A6NGW2 1772 aa38.9■■■■□ 3.82
PTPRF-216ENST00000617451 SLIT1O75093 1534 aa38.89■■■■□ 3.82
PTPRF-216ENST00000617451 TXNDC2Q86VQ3 553 aa38.88■■■■□ 3.81
PTPRF-216ENST00000617451 LRRC7Q96NW7 1537 aa38.88■■■■□ 3.81
PTPRF-216ENST00000617451 ALKQ9UM73 1620 aa38.87■■■■□ 3.81
PTPRF-216ENST00000617451 LMTK2Q8IWU2 1503 aa38.84■■■■□ 3.81
PTPRF-216ENST00000617451 EID1Q9Y6B2 187 aa38.81■■■■□ 3.8
PTPRF-216ENST00000617451 PIK3C2BO00750 1634 aa38.81■■■■□ 3.8
PTPRF-216ENST00000617451 SYNMO15061 1565 aa38.8■■■■□ 3.8
PTPRF-216ENST00000617451 TMEM2Q9UHN6 1383 aa38.79■■■■□ 3.8
PTPRF-216ENST00000617451 ADGRL2O95490 1459 aa38.77■■■■□ 3.8
PTPRF-216ENST00000617451 IDI1Q13907 227 aa38.76■■■■□ 3.8
PTPRF-216ENST00000617451 STAG3Q9UJ98 1225 aa38.76■■■■□ 3.8
PTPRF-216ENST00000617451 FAM50AQ14320 339 aaKnown RBP38.72■■■■□ 3.79
PTPRF-216ENST00000617451 KDM5AP29375 1690 aaKnown RBP38.71■■■■□ 3.79
PTPRF-216ENST00000617451 MED1Q15648 1581 aaPredicted RBP38.7■■■■□ 3.79
PTPRF-216ENST00000617451 EFCAB6Q5THR3 1501 aa38.7■■■■□ 3.79
PTPRF-216ENST00000617451 NOS1P29475 1434 aa38.7■■■■□ 3.79
PTPRF-216ENST00000617451 ANKRD50Q9ULJ7 1429 aa38.63■■■■□ 3.78
PTPRF-216ENST00000617451 SLC52A1Q9NWF4 448 aa38.62■■■■□ 3.77
PTPRF-216ENST00000617451 ADGRB3O60242 1522 aa38.58■■■■□ 3.77
PTPRF-216ENST00000617451 XIRP1Q702N8 1843 aaKnown RBP38.57■■■■□ 3.77
PTPRF-216ENST00000617451 RPRD2Q5VT52 1461 aaKnown RBP38.57■■■■□ 3.76
PTPRF-216ENST00000617451 TET3O43151 1660 aa38.56■■■■□ 3.76
PTPRF-216ENST00000617451 SENP3Q9H4L4 574 aaPredicted RBP38.56■■■■□ 3.76
PTPRF-216ENST00000617451 KCNA6P17658 529 aa38.53■■■■□ 3.76
PTPRF-216ENST00000617451 SLC26A8Q96RN1 970 aa38.53■■■■□ 3.76
PTPRF-216ENST00000617451 TMEM94Q12767 1356 aa38.49■■■■□ 3.75
PTPRF-216ENST00000617451 PHF23Q9BUL5 403 aaPredicted RBP38.45■■■■□ 3.75
PTPRF-216ENST00000617451 FAM135BQ49AJ0 1406 aa38.42■■■■□ 3.74
PTPRF-216ENST00000617451 PROSER2Q86WR7 435 aaPredicted RBP38.42■■■■□ 3.74
PTPRF-216ENST00000617451 UNC13BO14795 1591 aa38.41■■■■□ 3.74
PTPRF-216ENST00000617451 ZFYVE9O95405 1425 aa38.41■■■■□ 3.74
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms