RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 IQSEC2Q5JU85 1478 aa30.04■■■□□ 2.4
CDX1-202ENST00000616154 NCKAP5LQ9HCH0 1330 aa30.04■■■□□ 2.4
CDX1-202ENST00000616154 A2ML1A8K2U0 1454 aa30.04■■■□□ 2.4
CDX1-202ENST00000616154 PKD2Q13563 968 aa30.02■■■□□ 2.4
CDX1-202ENST00000616154 MAST1Q9Y2H9 1570 aa30.02■■■□□ 2.4
CDX1-202ENST00000616154 PZPP20742 1482 aa30.01■■■□□ 2.39
CDX1-202ENST00000616154 DNMT1P26358 1616 aaKnown RBP30■■■□□ 2.39
CDX1-202ENST00000616154 TSPY4P0CV99 314 aa30■■■□□ 2.39
CDX1-202ENST00000616154 TSPY10P0CW01 314 aa30■■■□□ 2.39
CDX1-202ENST00000616154 KANK4Q5T7N3 995 aaPredicted RBP29.96■■■□□ 2.39
CDX1-202ENST00000616154 MIA2Q96PC5 1412 aa29.96■■■□□ 2.39
CDX1-202ENST00000616154 RNF17Q9BXT8 1623 aaKnown RBP29.96■■■□□ 2.39
CDX1-202ENST00000616154 TNRQ92752 1358 aa29.95■■■□□ 2.39
CDX1-202ENST00000616154 MYOM3Q5VTT5 1437 aa29.95■■■□□ 2.39
CDX1-202ENST00000616154 WASHC2CQ9Y4E1 1318 aa29.95■■■□□ 2.38
CDX1-202ENST00000616154 FBXO31Q5XUX0 539 aaPredicted RBP29.93■■■□□ 2.38
CDX1-202ENST00000616154 POLR1AO95602 1720 aaPredicted RBP29.92■■■□□ 2.38
CDX1-202ENST00000616154 EIF2AK4Q9P2K8 1649 aaKnown RBP29.92■■■□□ 2.38
CDX1-202ENST00000616154 ZNF335Q9H4Z2 1342 aaPredicted RBP29.91■■■□□ 2.38
CDX1-202ENST00000616154 ZC3H13Q5T200 1668 aaKnown RBP29.91■■■□□ 2.38
CDX1-202ENST00000616154 ABCC3O15438 1527 aa29.86■■■□□ 2.37
CDX1-202ENST00000616154 NLRP1Q9C000 1473 aa29.86■■■□□ 2.37
CDX1-202ENST00000616154 NEURL4Q96JN8 1562 aa29.85■■■□□ 2.37
CDX1-202ENST00000616154 MROH1Q8NDA8 1641 aa29.84■■■□□ 2.37
CDX1-202ENST00000616154 CROCC2H7BZ55 1655 aa29.82■■■□□ 2.36
CDX1-202ENST00000616154 DUOX2Q9NRD8 1548 aa29.81■■■□□ 2.36
CDX1-202ENST00000616154 SPATA31D1Q6ZQQ2 1576 aa29.8■■■□□ 2.36
CDX1-202ENST00000616154 UGGT1Q9NYU2 1555 aa29.79■■■□□ 2.36
CDX1-202ENST00000616154 SHANK2Q9UPX8 1470 aa29.79■■■□□ 2.36
CDX1-202ENST00000616154 CEP152O94986 1710 aa29.78■■■□□ 2.36
CDX1-202ENST00000616154 PTPN23Q9H3S7 1636 aa29.78■■■□□ 2.36
CDX1-202ENST00000616154 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.76■■■□□ 2.35
CDX1-202ENST00000616154 DEPDC5O75140 1603 aa29.75■■■□□ 2.35
CDX1-202ENST00000616154 THEMISQ8N1K5 641 aaPredicted RBP29.75■■■□□ 2.35
CDX1-202ENST00000616154 ERVK-7P63135 1459 aa29.74■■■□□ 2.35
CDX1-202ENST00000616154 APLP2Q06481 763 aa29.73■■■□□ 2.35
CDX1-202ENST00000616154 ANKLE2Q86XL3 938 aa29.73■■■□□ 2.35
CDX1-202ENST00000616154 ABCC5O15440 1437 aa29.73■■■□□ 2.35
CDX1-202ENST00000616154 KIF15Q9NS87 1388 aa29.71■■■□□ 2.35
CDX1-202ENST00000616154 MED14O60244 1454 aa29.71■■■□□ 2.35
CDX1-202ENST00000616154 CPS1P31327 1500 aa29.71■■■□□ 2.35
CDX1-202ENST00000616154 PRDM15P57071 1507 aaPredicted RBP29.71■■■□□ 2.35
CDX1-202ENST00000616154 UBAP1LF5GYI3 381 aa29.71■■■□□ 2.35
CDX1-202ENST00000616154 DISP3Q9P2K9 1392 aa29.7■■■□□ 2.35
CDX1-202ENST00000616154 ERBINQ96RT1 1412 aa29.7■■■□□ 2.35
CDX1-202ENST00000616154 CFAP65Q6ZU64 1925 aaKnown RBP29.69■■■□□ 2.34
CDX1-202ENST00000616154 VWDEQ8N2E2 1590 aa29.68■■■□□ 2.34
CDX1-202ENST00000616154 DAPK1P53355 1430 aa29.68■■■□□ 2.34
CDX1-202ENST00000616154 FGD6Q6ZV73 1430 aa29.68■■■□□ 2.34
CDX1-202ENST00000616154 NPHP4O75161 1426 aaPredicted RBP29.67■■■□□ 2.34
CDX1-202ENST00000616154 IQGAP1P46940 1657 aa29.67■■■□□ 2.34
CDX1-202ENST00000616154 UBR1Q8IWV7 1749 aa29.64■■■□□ 2.34
CDX1-202ENST00000616154 ARHGAP31Q2M1Z3 1444 aa29.63■■■□□ 2.33
CDX1-202ENST00000616154 RRP7BPQ9NSQ0 103 aa29.62■■■□□ 2.33
CDX1-202ENST00000616154 ANKRD30AQ9BXX3 1397 aa29.55■■■□□ 2.32
CDX1-202ENST00000616154 ILDR2Q71H61 639 aa29.54■■■□□ 2.32
CDX1-202ENST00000616154 STRCP1A6NGW2 1772 aa29.53■■■□□ 2.32
CDX1-202ENST00000616154 ARHGAP23Q9P227 1491 aa29.52■■■□□ 2.32
CDX1-202ENST00000616154 SLIT1O75093 1534 aa29.52■■■□□ 2.32
CDX1-202ENST00000616154 LMTK2Q8IWU2 1503 aa29.52■■■□□ 2.32
CDX1-202ENST00000616154 KANK1Q14678 1352 aa29.52■■■□□ 2.32
CDX1-202ENST00000616154 SCAF11Q99590 1463 aaKnown RBP29.51■■■□□ 2.31
CDX1-202ENST00000616154 TOM1O60784 492 aa29.5■■■□□ 2.31
CDX1-202ENST00000616154 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.5■■■□□ 2.31
CDX1-202ENST00000616154 SYNMO15061 1565 aa29.49■■■□□ 2.31
CDX1-202ENST00000616154 PIK3C2BO00750 1634 aa29.49■■■□□ 2.31
CDX1-202ENST00000616154 CHIC2Q9UKJ5 165 aa29.48■■■□□ 2.31
CDX1-202ENST00000616154 ADGRL2O95490 1459 aa29.48■■■□□ 2.31
CDX1-202ENST00000616154 KDM5AP29375 1690 aaKnown RBP29.46■■■□□ 2.31
CDX1-202ENST00000616154 ALKQ9UM73 1620 aa29.45■■■□□ 2.31
CDX1-202ENST00000616154 LRRC7Q96NW7 1537 aa29.44■■■□□ 2.3
CDX1-202ENST00000616154 SCAF1Q9H7N4 1312 aaKnown RBP29.44■■■□□ 2.3
CDX1-202ENST00000616154 PIP4K2BP78356 416 aa29.44■■■□□ 2.3
CDX1-202ENST00000616154 EFCAB6Q5THR3 1501 aa29.42■■■□□ 2.3
CDX1-202ENST00000616154 LTKP29376 864 aa29.42■■■□□ 2.3
CDX1-202ENST00000616154 HSPA1LP34931 641 aa29.41■■■□□ 2.3
CDX1-202ENST00000616154 TXNDC2Q86VQ3 553 aa29.41■■■□□ 2.3
CDX1-202ENST00000616154 SOCS7O14512 581 aa29.39■■■□□ 2.3
CDX1-202ENST00000616154 TMEM2Q9UHN6 1383 aa29.38■■■□□ 2.29
CDX1-202ENST00000616154 FAM50AQ14320 339 aaKnown RBP29.37■■■□□ 2.29
CDX1-202ENST00000616154 EID1Q9Y6B2 187 aa29.37■■■□□ 2.29
CDX1-202ENST00000616154 NOS1P29475 1434 aa29.36■■■□□ 2.29
CDX1-202ENST00000616154 ANKRD50Q9ULJ7 1429 aa29.33■■■□□ 2.29
CDX1-202ENST00000616154 IDI1Q13907 227 aa29.33■■■□□ 2.29
CDX1-202ENST00000616154 STAG3Q9UJ98 1225 aa29.33■■■□□ 2.29
CDX1-202ENST00000616154 ADGRB3O60242 1522 aa29.32■■■□□ 2.28
CDX1-202ENST00000616154 XIRP1Q702N8 1843 aaKnown RBP29.31■■■□□ 2.28
CDX1-202ENST00000616154 RPRD2Q5VT52 1461 aaKnown RBP29.3■■■□□ 2.28
CDX1-202ENST00000616154 MED1Q15648 1581 aaPredicted RBP29.3■■■□□ 2.28
CDX1-202ENST00000616154 TET3O43151 1660 aa29.28■■■□□ 2.28
CDX1-202ENST00000616154 UNC13BO14795 1591 aa29.26■■■□□ 2.27
CDX1-202ENST00000616154 SLC52A1Q9NWF4 448 aa29.25■■■□□ 2.27
CDX1-202ENST00000616154 GCC2Q8IWJ2 1684 aa29.25■■■□□ 2.27
CDX1-202ENST00000616154 MYO5BQ9ULV0 1848 aa29.2■■■□□ 2.27
CDX1-202ENST00000616154 ROCK1Q13464 1354 aa29.19■■■□□ 2.26
CDX1-202ENST00000616154 KCNA6P17658 529 aa29.16■■■□□ 2.26
CDX1-202ENST00000616154 NWD1Q149M9 1564 aa29.15■■■□□ 2.26
CDX1-202ENST00000616154 E9PCH4 1651 aa29.15■■■□□ 2.26
CDX1-202ENST00000616154 TMEM131LA2VDJ0 1609 aa29.14■■■□□ 2.26
CDX1-202ENST00000616154 SLC26A8Q96RN1 970 aa29.14■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms