RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	DEPDC5	O75140	1603 aa		13.67	□□□□□ -0.22
SSBP4-208	ENST00000600628	PTPRK	Q15262	1439 aa		13.66	□□□□□ -0.22
SSBP4-208	ENST00000600628	ZMYM3	Q14202	1370 aa		13.66	□□□□□ -0.22
SSBP4-208	ENST00000600628	ERBIN	Q96RT1	1412 aa		13.65	□□□□□ -0.22
SSBP4-208	ENST00000600628	CEBPA	P49715	358 aa	Predicted RBP	13.65	□□□□□ -0.22
SSBP4-208	ENST00000600628	RRBP1	Q9P2E9	1410 aa	Known RBP	13.64	□□□□□ -0.23
SSBP4-208	ENST00000600628	PRDM15	P57071	1507 aa	Predicted RBP	13.64	□□□□□ -0.23
SSBP4-208	ENST00000600628	ZC3H13	Q5T200	1668 aa	Known RBP	13.64	□□□□□ -0.23
SSBP4-208	ENST00000600628	KIF15	Q9NS87	1388 aa		13.64	□□□□□ -0.23
SSBP4-208	ENST00000600628	VWDE	Q8N2E2	1590 aa		13.63	□□□□□ -0.23
SSBP4-208	ENST00000600628	KIF3B	O15066	747 aa		13.63	□□□□□ -0.23
SSBP4-208	ENST00000600628	ESF1	Q9H501	851 aa	Known RBP	13.62	□□□□□ -0.23
SSBP4-208	ENST00000600628	ABCC3	O15438	1527 aa		13.62	□□□□□ -0.23
SSBP4-208	ENST00000600628	PZP	P20742	1482 aa		13.61	□□□□□ -0.23
SSBP4-208	ENST00000600628	ROCK1	Q13464	1354 aa		13.61	□□□□□ -0.23
SSBP4-208	ENST00000600628	ANKRD30A	Q9BXX3	1397 aa		13.61	□□□□□ -0.23
SSBP4-208	ENST00000600628	ZNF142	P52746	1687 aa	Predicted RBP	13.61	□□□□□ -0.23
SSBP4-208	ENST00000600628	GGT6	Q6P531	493 aa		13.61	□□□□□ -0.23
SSBP4-208	ENST00000600628	STRC	Q7RTU9	1775 aa		13.59	□□□□□ -0.23
SSBP4-208	ENST00000600628	UHRF1BP1	Q6BDS2	1440 aa		13.58	□□□□□ -0.24
SSBP4-208	ENST00000600628	LMTK2	Q8IWU2	1503 aa		13.58	□□□□□ -0.24
SSBP4-208	ENST00000600628	MYO3A	Q8NEV4	1616 aa		13.57	□□□□□ -0.24
SSBP4-208	ENST00000600628	ARHGAP31	Q2M1Z3	1444 aa		13.57	□□□□□ -0.24
SSBP4-208	ENST00000600628	CEP152	O94986	1710 aa		13.57	□□□□□ -0.24
SSBP4-208	ENST00000600628	RRP7BP	Q9NSQ0	103 aa		13.57	□□□□□ -0.24
SSBP4-208	ENST00000600628	SPATA31D1	Q6ZQQ2	1576 aa		13.57	□□□□□ -0.24
SSBP4-208	ENST00000600628	CAMSAP1	Q5T5Y3	1602 aa		13.57	□□□□□ -0.24
SSBP4-208	ENST00000600628	HSPA2	P54652	639 aa		13.56	□□□□□ -0.24
SSBP4-208	ENST00000600628	FAM50A	Q14320	339 aa	Known RBP	13.56	□□□□□ -0.24
SSBP4-208	ENST00000600628	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.55	□□□□□ -0.24
SSBP4-208	ENST00000600628	CHIC2	Q9UKJ5	165 aa		13.55	□□□□□ -0.24
SSBP4-208	ENST00000600628	WASHC2C	Q9Y4E1	1318 aa		13.55	□□□□□ -0.24
SSBP4-208	ENST00000600628	UNC13B	O14795	1591 aa		13.54	□□□□□ -0.24
SSBP4-208	ENST00000600628	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.54	□□□□□ -0.24
SSBP4-208	ENST00000600628	ANKRD50	Q9ULJ7	1429 aa		13.54	□□□□□ -0.24
SSBP4-208	ENST00000600628	A2ML1	A8K2U0	1454 aa		13.52	□□□□□ -0.25
SSBP4-208	ENST00000600628	ERVK-7	P63135	1459 aa		13.52	□□□□□ -0.25
SSBP4-208	ENST00000600628	PLA2R1	Q13018	1463 aa		13.51	□□□□□ -0.25
SSBP4-208	ENST00000600628	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.51	□□□□□ -0.25
SSBP4-208	ENST00000600628	EFCAB6	Q5THR3	1501 aa		13.5	□□□□□ -0.25
SSBP4-208	ENST00000600628	NLRP1	Q9C000	1473 aa		13.5	□□□□□ -0.25
SSBP4-208	ENST00000600628	TNR	Q92752	1358 aa		13.49	□□□□□ -0.25
SSBP4-208	ENST00000600628	CFAP65	Q6ZU64	1925 aa	Known RBP	13.49	□□□□□ -0.25
SSBP4-208	ENST00000600628	TET3	O43151	1660 aa		13.48	□□□□□ -0.25
SSBP4-208	ENST00000600628	IQGAP3	Q86VI3	1631 aa		13.48	□□□□□ -0.25
SSBP4-208	ENST00000600628	NOS1	P29475	1434 aa		13.47	□□□□□ -0.25
SSBP4-208	ENST00000600628	GCC2	Q8IWJ2	1684 aa		13.47	□□□□□ -0.25
SSBP4-208	ENST00000600628	RPRD2	Q5VT52	1461 aa	Known RBP	13.47	□□□□□ -0.25
SSBP4-208	ENST00000600628	PTPRT	O14522	1441 aa		13.47	□□□□□ -0.25
SSBP4-208	ENST00000600628	NAIP	Q13075	1403 aa		13.47	□□□□□ -0.25
SSBP4-208	ENST00000600628	KDM5A	P29375	1690 aa	Known RBP	13.47	□□□□□ -0.25
SSBP4-208	ENST00000600628	HFM1	A2PYH4	1435 aa		13.45	□□□□□ -0.26
SSBP4-208	ENST00000600628	SYNM	O15061	1565 aa		13.45	□□□□□ -0.26
SSBP4-208	ENST00000600628	KANK1	Q14678	1352 aa		13.45	□□□□□ -0.26
SSBP4-208	ENST00000600628	UBR1	Q8IWV7	1749 aa		13.44	□□□□□ -0.26
SSBP4-208	ENST00000600628	NEURL4	Q96JN8	1562 aa		13.44	□□□□□ -0.26
SSBP4-208	ENST00000600628	UGGT1	Q9NYU2	1555 aa		13.43	□□□□□ -0.26
SSBP4-208	ENST00000600628	DMRT2	Q9Y5R5	561 aa		13.43	□□□□□ -0.26
SSBP4-208	ENST00000600628		E9PCH4	1651 aa		13.43	□□□□□ -0.26
SSBP4-208	ENST00000600628	POLR1A	O95602	1720 aa	Predicted RBP	13.42	□□□□□ -0.26
SSBP4-208	ENST00000600628	PIK3C2B	O00750	1634 aa		13.42	□□□□□ -0.26
SSBP4-208	ENST00000600628	ARHGAP23	Q9P227	1491 aa		13.42	□□□□□ -0.26
SSBP4-208	ENST00000600628	MED14	O60244	1454 aa		13.41	□□□□□ -0.26
SSBP4-208	ENST00000600628	SLIT1	O75093	1534 aa		13.4	□□□□□ -0.26
SSBP4-208	ENST00000600628	PKD2	Q13563	968 aa		13.4	□□□□□ -0.26
SSBP4-208	ENST00000600628	ILDR1	Q86SU0	546 aa	Predicted RBP	13.4	□□□□□ -0.26
SSBP4-208	ENST00000600628	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
SSBP4-208	ENST00000600628	LTBP4	Q8N2S1	1624 aa		13.39	□□□□□ -0.27
SSBP4-208	ENST00000600628	ITGAE	P38570	1179 aa		13.38	□□□□□ -0.27
SSBP4-208	ENST00000600628	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.37	□□□□□ -0.27
SSBP4-208	ENST00000600628	NUP155	O75694	1391 aa		13.36	□□□□□ -0.27
SSBP4-208	ENST00000600628	NCKAP5L	Q9HCH0	1330 aa		13.36	□□□□□ -0.27
SSBP4-208	ENST00000600628	IDI1	Q13907	227 aa		13.35	□□□□□ -0.27
SSBP4-208	ENST00000600628	SLC52A1	Q9NWF4	448 aa		13.35	□□□□□ -0.27
SSBP4-208	ENST00000600628	ADGRB3	O60242	1522 aa		13.34	□□□□□ -0.27
SSBP4-208	ENST00000600628	TMEM131L	A2VDJ0	1609 aa		13.34	□□□□□ -0.27
SSBP4-208	ENST00000600628	MYO5B	Q9ULV0	1848 aa		13.34	□□□□□ -0.27
SSBP4-208	ENST00000600628	SPHKAP	Q2M3C7	1700 aa		13.33	□□□□□ -0.28
SSBP4-208	ENST00000600628	IQGAP1	P46940	1657 aa		13.32	□□□□□ -0.28
SSBP4-208	ENST00000600628	CERK	Q8TCT0	537 aa		13.32	□□□□□ -0.28
SSBP4-208	ENST00000600628	FBXO41	Q8TF61	875 aa		13.32	□□□□□ -0.28
SSBP4-208	ENST00000600628	TMEM2	Q9UHN6	1383 aa		13.32	□□□□□ -0.28
SSBP4-208	ENST00000600628	ZFYVE9	O95405	1425 aa		13.31	□□□□□ -0.28
SSBP4-208	ENST00000600628	SCAF11	Q99590	1463 aa	Known RBP	13.31	□□□□□ -0.28
SSBP4-208	ENST00000600628	ANKLE2	Q86XL3	938 aa		13.31	□□□□□ -0.28
SSBP4-208	ENST00000600628	LTK	P29376	864 aa		13.3	□□□□□ -0.28
SSBP4-208	ENST00000600628	NPHP4	O75161	1426 aa	Predicted RBP	13.3	□□□□□ -0.28
SSBP4-208	ENST00000600628	IQSEC2	Q5JU85	1478 aa		13.29	□□□□□ -0.28
SSBP4-208	ENST00000600628	TRPM2	O94759	1503 aa		13.29	□□□□□ -0.28
SSBP4-208	ENST00000600628	STRCP1	A6NGW2	1772 aa		13.28	□□□□□ -0.28
SSBP4-208	ENST00000600628	CLTCL1	P53675	1640 aa		13.26	□□□□□ -0.29
SSBP4-208	ENST00000600628	SETD5	Q9C0A6	1442 aa		13.25	□□□□□ -0.29
SSBP4-208	ENST00000600628	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.25	□□□□□ -0.29
SSBP4-208	ENST00000600628	ACIN1	Q9UKV3	1341 aa	Known RBP	13.24	□□□□□ -0.29
SSBP4-208	ENST00000600628	TXNDC2	Q86VQ3	553 aa		13.23	□□□□□ -0.29
SSBP4-208	ENST00000600628	CPS1	P31327	1500 aa		13.23	□□□□□ -0.29
SSBP4-208	ENST00000600628	HRC	P23327	699 aa		13.22	□□□□□ -0.29
SSBP4-208	ENST00000600628	RIMS2	Q9UQ26	1411 aa		13.21	□□□□□ -0.3
SSBP4-208	ENST00000600628	RAB3GAP2	Q9H2M9	1393 aa		13.2	□□□□□ -0.3
SSBP4-208	ENST00000600628	PLEKHG1	Q9ULL1	1385 aa		13.2	□□□□□ -0.3

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