RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-208ENST00000600628 NISCHQ9Y2I1 1504 aa21.8■■□□□ 1.08
SSBP4-208ENST00000600628 CCDC180Q9P1Z9 1646 aa19.43■□□□□ 0.7
SSBP4-208ENST00000600628 ABCC9O60706 1549 aa18.9■□□□□ 0.62
SSBP4-208ENST00000600628 NACADO15069 1562 aa18.25■□□□□ 0.51
SSBP4-208ENST00000600628 RB1CC1Q8TDY2 1594 aa18.24■□□□□ 0.51
SSBP4-208ENST00000600628 MYO15BQ96JP2 1530 aa18.22■□□□□ 0.51
SSBP4-208ENST00000600628 ZCCHC6Q5VYS8 1495 aaKnown RBP18.16■□□□□ 0.5
SSBP4-208ENST00000600628 DCAF1Q9Y4B6 1507 aa18.11■□□□□ 0.49
SSBP4-208ENST00000600628 DCAF8L2P0C7V8 631 aa17.94■□□□□ 0.46
SSBP4-208ENST00000600628 UNC13AQ9UPW8 1703 aa17.91■□□□□ 0.46
SSBP4-208ENST00000600628 BICRAQ9NZM4 1560 aa17.79■□□□□ 0.44
SSBP4-208ENST00000600628 PABPN1Q86U42 306 aaKnown RBP eCLIP17.61■□□□□ 0.413e-7■■□□□ 12.5
SSBP4-208ENST00000600628 SCRIBQ14160 1630 aa17.59■□□□□ 0.41
SSBP4-208ENST00000600628 SHROOM4Q9ULL8 1493 aa17.59■□□□□ 0.41
SSBP4-208ENST00000600628 DNAJC5BQ9UF47 199 aa17.48■□□□□ 0.39
SSBP4-208ENST00000600628 EIF4G1Q04637 1599 aaKnown RBP17.24■□□□□ 0.35
SSBP4-208ENST00000600628 CC2D2AQ9P2K1 1620 aa17.18■□□□□ 0.34
SSBP4-208ENST00000600628 CECR2Q9BXF3 1484 aa17.02■□□□□ 0.32
SSBP4-208ENST00000600628 SMARCA4P51532 1647 aa16.91■□□□□ 0.3
SSBP4-208ENST00000600628 NCAPD3P42695 1498 aa16.86■□□□□ 0.29
SSBP4-208ENST00000600628 BAZ1AQ9NRL2 1556 aaPredicted RBP16.86■□□□□ 0.29
SSBP4-208ENST00000600628 PEG3Q9GZU2 1588 aa16.84■□□□□ 0.29
SSBP4-208ENST00000600628 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
SSBP4-208ENST00000600628 SMARCA2P51531 1590 aa16.79■□□□□ 0.28
SSBP4-208ENST00000600628 HMGXB3Q12766 1538 aa16.78■□□□□ 0.28
SSBP4-208ENST00000600628 MROH2BQ7Z745 1585 aa16.77■□□□□ 0.27
SSBP4-208ENST00000600628 BAZ1BQ9UIG0 1483 aaKnown RBP16.61■□□□□ 0.25
SSBP4-208ENST00000600628 WIZO95785 1651 aa16.57■□□□□ 0.24
SSBP4-208ENST00000600628 RSF1Q96T23 1441 aaPredicted RBP16.57■□□□□ 0.24
SSBP4-208ENST00000600628 TOP2AP11388 1531 aaKnown RBP16.4■□□□□ 0.22
SSBP4-208ENST00000600628 LAMC3Q9Y6N6 1575 aa16.39■□□□□ 0.21
SSBP4-208ENST00000600628 NESP48681 1621 aa16.39■□□□□ 0.21
SSBP4-208ENST00000600628 CADPSQ9ULU8 1353 aa16.31■□□□□ 0.2
SSBP4-208ENST00000600628 CFTRP13569 1480 aa16.24■□□□□ 0.19
SSBP4-208ENST00000600628 ERCC6Q03468 1493 aa16.24■□□□□ 0.19
SSBP4-208ENST00000600628 THOC2Q8NI27 1593 aaKnown RBP16.23■□□□□ 0.19
SSBP4-208ENST00000600628 KIF21AQ7Z4S6 1674 aa16.23■□□□□ 0.19
SSBP4-208ENST00000600628 CUX2O14529 1486 aa16.22■□□□□ 0.19
SSBP4-208ENST00000600628 PDS5BQ9NTI5 1447 aa16.22■□□□□ 0.19
SSBP4-208ENST00000600628 CCDC88BA6NC98 1476 aa16.2■□□□□ 0.18
SSBP4-208ENST00000600628 PRDM2Q13029 1718 aa16.14■□□□□ 0.17
SSBP4-208ENST00000600628 FANCD2Q9BXW9 1451 aa16.1■□□□□ 0.17
SSBP4-208ENST00000600628 WDR62O43379 1518 aa16.08■□□□□ 0.16
SSBP4-208ENST00000600628 MRC2Q9UBG0 1479 aa16.07■□□□□ 0.16
SSBP4-208ENST00000600628 CEP164Q9UPV0 1460 aa16.06■□□□□ 0.16
SSBP4-208ENST00000600628 URB2Q14146 1524 aaKnown RBP15.98■□□□□ 0.15
SSBP4-208ENST00000600628 SUPT5HO00267 1087 aaKnown RBP15.89■□□□□ 0.13
SSBP4-208ENST00000600628 TOPBP1Q92547 1522 aa15.86■□□□□ 0.13
SSBP4-208ENST00000600628 ABCC8Q09428 1581 aa15.85■□□□□ 0.13
SSBP4-208ENST00000600628 DNMBPQ6XZF7 1577 aa15.84■□□□□ 0.13
SSBP4-208ENST00000600628 DNAJC5Q9H3Z4 198 aa15.84■□□□□ 0.13
SSBP4-208ENST00000600628 IFT140Q96RY7 1462 aa15.75■□□□□ 0.11
SSBP4-208ENST00000600628 TARBP1Q13395 1621 aaKnown RBP15.75■□□□□ 0.11
SSBP4-208ENST00000600628 CUX1P39880 1505 aa15.74■□□□□ 0.11
SSBP4-208ENST00000600628 POLA1P09884 1462 aaPredicted RBP15.72■□□□□ 0.11
SSBP4-208ENST00000600628 ZNF608Q9ULD9 1512 aaPredicted RBP15.69■□□□□ 0.1
SSBP4-208ENST00000600628 FGD5Q6ZNL6 1462 aa15.65■□□□□ 0.1
SSBP4-208ENST00000600628 EIF4G3O43432 1585 aaKnown RBP15.63■□□□□ 0.09
SSBP4-208ENST00000600628 WDR97A6NE52 1622 aa15.62■□□□□ 0.09
SSBP4-208ENST00000600628 BIVM-ERCC5R4GMW8 1640 aa15.61■□□□□ 0.09
SSBP4-208ENST00000600628 RAD54L2Q9Y4B4 1467 aa15.61■□□□□ 0.09
SSBP4-208ENST00000600628 SOGA1O94964 1423 aa15.6■□□□□ 0.09
SSBP4-208ENST00000600628 TOP2BQ02880 1626 aa15.6■□□□□ 0.09
SSBP4-208ENST00000600628 SYNJ1O43426 1573 aa15.58■□□□□ 0.08
SSBP4-208ENST00000600628 AQRO60306 1485 aaKnown RBP eCLIP15.57■□□□□ 0.088e-8■■■■■ 50.9
SSBP4-208ENST00000600628 WRNQ14191 1432 aaPredicted RBP eCLIP15.56■□□□□ 0.08
SSBP4-208ENST00000600628 ABCA10Q8WWZ4 1543 aa15.55■□□□□ 0.08
SSBP4-208ENST00000600628 TDRD9Q8NDG6 1382 aaKnown RBP15.5■□□□□ 0.07
SSBP4-208ENST00000600628 ABCA5Q8WWZ7 1642 aa15.5■□□□□ 0.07
SSBP4-208ENST00000600628 GRIN2BQ13224 1484 aa15.46■□□□□ 0.06
SSBP4-208ENST00000600628 OSCARQ8IYS5 282 aa15.45■□□□□ 0.06
SSBP4-208ENST00000600628 GAPVD1Q14C86 1478 aa15.45■□□□□ 0.06
SSBP4-208ENST00000600628 MAGI1Q96QZ7 1491 aaPredicted RBP15.45■□□□□ 0.06
SSBP4-208ENST00000600628 CHD1O14646 1710 aa15.44■□□□□ 0.06
SSBP4-208ENST00000600628 PBRM1Q86U86 1689 aa15.44■□□□□ 0.06
SSBP4-208ENST00000600628 SNAPC4Q5SXM2 1469 aa15.41■□□□□ 0.06
SSBP4-208ENST00000600628 SYNJ2O15056 1496 aa15.37■□□□□ 0.05
SSBP4-208ENST00000600628 ERICH3Q5RHP9 1530 aa15.36■□□□□ 0.05
SSBP4-208ENST00000600628 CLASP1Q7Z460 1538 aa15.33■□□□□ 0.05
SSBP4-208ENST00000600628 ADAMTS12P58397 1594 aa15.33■□□□□ 0.05
SSBP4-208ENST00000600628 RIMBP3CA6NJZ7 1639 aa15.28■□□□□ 0.04
SSBP4-208ENST00000600628 RIMBP3BA6NNM3 1639 aa15.28■□□□□ 0.04
SSBP4-208ENST00000600628 RIMBP3Q9UFD9 1639 aa15.28■□□□□ 0.04
SSBP4-208ENST00000600628 ARHGEF11O15085 1522 aa15.27■□□□□ 0.04
SSBP4-208ENST00000600628 GRIN2AQ12879 1464 aa15.27■□□□□ 0.03
SSBP4-208ENST00000600628 FHAD1B1AJZ9 1412 aa15.26■□□□□ 0.03
SSBP4-208ENST00000600628 FBLN2P98095 1184 aa15.26■□□□□ 0.03
SSBP4-208ENST00000600628 NUP160Q12769 1436 aa15.26■□□□□ 0.03
SSBP4-208ENST00000600628 CHMP7Q8WUX9 453 aaPredicted RBP15.25■□□□□ 0.03
SSBP4-208ENST00000600628 IGF1RP08069 1367 aa15.24■□□□□ 0.03
SSBP4-208ENST00000600628 KIF27Q86VH2 1401 aa15.22■□□□□ 0.03
SSBP4-208ENST00000600628 CEP170Q5SW79 1584 aa15.21■□□□□ 0.03
SSBP4-208ENST00000600628 TRIM41Q8WV44 630 aa15.21■□□□□ 0.03
SSBP4-208ENST00000600628 CUL7Q14999 1698 aa15.19■□□□□ 0.02
SSBP4-208ENST00000600628 SHROOM2Q13796 1616 aa15.17■□□□□ 0.02
SSBP4-208ENST00000600628 ARAP1Q96P48 1450 aa15.16■□□□□ 0.02
SSBP4-208ENST00000600628 RUSC2Q8N2Y8 1516 aa15.11■□□□□ 0.01
SSBP4-208ENST00000600628 CARMIL1Q5VZK9 1371 aa15.09■□□□□ 0.01
SSBP4-208ENST00000600628 ERCC6L2Q5T890 1561 aa15.07■□□□□ 0
SSBP4-208ENST00000600628 CYB5RLQ6IPT4 315 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms