RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 FAM135AQ9P2D6 1515 aa29.51■■■□□ 2.32
PNKP-213ENST00000599543 MAST1Q9Y2H9 1570 aa29.5■■■□□ 2.31
PNKP-213ENST00000599543 MIA2Q96PC5 1412 aa29.49■■■□□ 2.31
PNKP-213ENST00000599543 APLP2Q06481 763 aa29.46■■■□□ 2.31
PNKP-213ENST00000599543 PLA2R1Q13018 1463 aa29.43■■■□□ 2.3
PNKP-213ENST00000599543 WASHC2CQ9Y4E1 1318 aa29.43■■■□□ 2.3
PNKP-213ENST00000599543 PZPP20742 1482 aa29.42■■■□□ 2.3
PNKP-213ENST00000599543 RNF17Q9BXT8 1623 aaKnown RBP29.41■■■□□ 2.3
PNKP-213ENST00000599543 EIF2AK4Q9P2K8 1649 aaKnown RBP29.4■■■□□ 2.3
PNKP-213ENST00000599543 A2ML1A8K2U0 1454 aa29.4■■■□□ 2.3
PNKP-213ENST00000599543 NCKAP5LQ9HCH0 1330 aa29.38■■■□□ 2.29
PNKP-213ENST00000599543 DNMT1P26358 1616 aaKnown RBP29.38■■■□□ 2.29
PNKP-213ENST00000599543 LTBP4Q8N2S1 1624 aa29.37■■■□□ 2.29
PNKP-213ENST00000599543 CROCC2H7BZ55 1655 aa29.37■■■□□ 2.29
PNKP-213ENST00000599543 ZC3H13Q5T200 1668 aaKnown RBP29.37■■■□□ 2.29
PNKP-213ENST00000599543 TCOF1Q13428 1488 aaKnown RBP29.36■■■□□ 2.29
PNKP-213ENST00000599543 PTPN23Q9H3S7 1636 aa29.36■■■□□ 2.29
PNKP-213ENST00000599543 TNRQ92752 1358 aa29.36■■■□□ 2.29
PNKP-213ENST00000599543 PKD2Q13563 968 aa29.35■■■□□ 2.29
PNKP-213ENST00000599543 FBXO31Q5XUX0 539 aaPredicted RBP29.34■■■□□ 2.29
PNKP-213ENST00000599543 DUOX2Q9NRD8 1548 aa29.31■■■□□ 2.28
PNKP-213ENST00000599543 POLR1AO95602 1720 aaPredicted RBP29.31■■■□□ 2.28
PNKP-213ENST00000599543 ABCC3O15438 1527 aa29.3■■■□□ 2.28
PNKP-213ENST00000599543 SHANK2Q9UPX8 1470 aa29.3■■■□□ 2.28
PNKP-213ENST00000599543 MROH1Q8NDA8 1641 aa29.28■■■□□ 2.28
PNKP-213ENST00000599543 IQSEC2Q5JU85 1478 aa29.27■■■□□ 2.28
PNKP-213ENST00000599543 FGD6Q6ZV73 1430 aa29.27■■■□□ 2.28
PNKP-213ENST00000599543 CEP152O94986 1710 aa29.26■■■□□ 2.27
PNKP-213ENST00000599543 NLRP1Q9C000 1473 aa29.26■■■□□ 2.27
PNKP-213ENST00000599543 ABCC5O15440 1437 aa29.26■■■□□ 2.27
PNKP-213ENST00000599543 KIF15Q9NS87 1388 aa29.25■■■□□ 2.27
PNKP-213ENST00000599543 ZNF335Q9H4Z2 1342 aaPredicted RBP29.23■■■□□ 2.27
PNKP-213ENST00000599543 DAPK1P53355 1430 aa29.23■■■□□ 2.27
PNKP-213ENST00000599543 UGGT1Q9NYU2 1555 aa29.22■■■□□ 2.27
PNKP-213ENST00000599543 ERBINQ96RT1 1412 aa29.21■■■□□ 2.27
PNKP-213ENST00000599543 SPATA31D1Q6ZQQ2 1576 aa29.21■■■□□ 2.27
PNKP-213ENST00000599543 CFAP65Q6ZU64 1925 aaKnown RBP29.2■■■□□ 2.26
PNKP-213ENST00000599543 NEURL4Q96JN8 1562 aa29.19■■■□□ 2.26
PNKP-213ENST00000599543 PRDM15P57071 1507 aaPredicted RBP29.19■■■□□ 2.26
PNKP-213ENST00000599543 ERVK-7P63135 1459 aa29.17■■■□□ 2.26
PNKP-213ENST00000599543 RRP7BPQ9NSQ0 103 aa29.17■■■□□ 2.26
PNKP-213ENST00000599543 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.16■■■□□ 2.26
PNKP-213ENST00000599543 THEMISQ8N1K5 641 aaPredicted RBP29.16■■■□□ 2.26
PNKP-213ENST00000599543 DEPDC5O75140 1603 aa29.14■■■□□ 2.26
PNKP-213ENST00000599543 ANKLE2Q86XL3 938 aa29.13■■■□□ 2.25
PNKP-213ENST00000599543 ANKRD30AQ9BXX3 1397 aa29.12■■■□□ 2.25
PNKP-213ENST00000599543 CHIC2Q9UKJ5 165 aa29.08■■■□□ 2.25
PNKP-213ENST00000599543 UBR1Q8IWV7 1749 aa29.06■■■□□ 2.24
PNKP-213ENST00000599543 IQGAP1P46940 1657 aa29.06■■■□□ 2.24
PNKP-213ENST00000599543 ARHGAP31Q2M1Z3 1444 aa29.06■■■□□ 2.24
PNKP-213ENST00000599543 KANK1Q14678 1352 aa29.06■■■□□ 2.24
PNKP-213ENST00000599543 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.06■■■□□ 2.24
PNKP-213ENST00000599543 MED14O60244 1454 aa29.05■■■□□ 2.24
PNKP-213ENST00000599543 NPHP4O75161 1426 aaPredicted RBP29.04■■■□□ 2.24
PNKP-213ENST00000599543 CPS1P31327 1500 aa29.04■■■□□ 2.24
PNKP-213ENST00000599543 FAM50AQ14320 339 aaKnown RBP29.02■■■□□ 2.24
PNKP-213ENST00000599543 UBAP1LF5GYI3 381 aa29.01■■■□□ 2.23
PNKP-213ENST00000599543 ADGRL2O95490 1459 aa29.01■■■□□ 2.23
PNKP-213ENST00000599543 VWDEQ8N2E2 1590 aa29■■■□□ 2.23
PNKP-213ENST00000599543 LMTK2Q8IWU2 1503 aa28.97■■■□□ 2.23
PNKP-213ENST00000599543 PIK3C2BO00750 1634 aa28.94■■■□□ 2.22
PNKP-213ENST00000599543 SCAF11Q99590 1463 aaKnown RBP28.92■■■□□ 2.22
PNKP-213ENST00000599543 EFCAB6Q5THR3 1501 aa28.92■■■□□ 2.22
PNKP-213ENST00000599543 SLIT1O75093 1534 aa28.91■■■□□ 2.22
PNKP-213ENST00000599543 ANKRD50Q9ULJ7 1429 aa28.89■■■□□ 2.22
PNKP-213ENST00000599543 ARHGAP23Q9P227 1491 aa28.89■■■□□ 2.22
PNKP-213ENST00000599543 KDM5AP29375 1690 aaKnown RBP28.89■■■□□ 2.21
PNKP-213ENST00000599543 DISP3Q9P2K9 1392 aa28.88■■■□□ 2.21
PNKP-213ENST00000599543 STRCP1A6NGW2 1772 aa28.87■■■□□ 2.21
PNKP-213ENST00000599543 STAG3Q9UJ98 1225 aa28.86■■■□□ 2.21
PNKP-213ENST00000599543 SYNMO15061 1565 aa28.86■■■□□ 2.21
PNKP-213ENST00000599543 TXNDC2Q86VQ3 553 aa28.84■■■□□ 2.21
PNKP-213ENST00000599543 TOM1O60784 492 aa28.83■■■□□ 2.21
PNKP-213ENST00000599543 EID1Q9Y6B2 187 aa28.83■■■□□ 2.21
PNKP-213ENST00000599543 SCAF1Q9H7N4 1312 aaKnown RBP28.83■■■□□ 2.21
PNKP-213ENST00000599543 LTKP29376 864 aa28.82■■■□□ 2.2
PNKP-213ENST00000599543 TET3O43151 1660 aa28.81■■■□□ 2.2
PNKP-213ENST00000599543 TMEM2Q9UHN6 1383 aa28.81■■■□□ 2.2
PNKP-213ENST00000599543 NOS1P29475 1434 aa28.8■■■□□ 2.2
PNKP-213ENST00000599543 UNC13BO14795 1591 aa28.79■■■□□ 2.2
PNKP-213ENST00000599543 RPRD2Q5VT52 1461 aaKnown RBP28.79■■■□□ 2.2
PNKP-213ENST00000599543 PIP4K2BP78356 416 aa28.79■■■□□ 2.2
PNKP-213ENST00000599543 GCC2Q8IWJ2 1684 aa28.78■■■□□ 2.2
PNKP-213ENST00000599543 IDI1Q13907 227 aa28.78■■■□□ 2.2
PNKP-213ENST00000599543 ADGRB3O60242 1522 aa28.78■■■□□ 2.2
PNKP-213ENST00000599543 LRRC7Q96NW7 1537 aa28.78■■■□□ 2.2
PNKP-213ENST00000599543 ROCK1Q13464 1354 aa28.75■■■□□ 2.19
PNKP-213ENST00000599543 SLC52A1Q9NWF4 448 aa28.73■■■□□ 2.19
PNKP-213ENST00000599543 ALKQ9UM73 1620 aa28.71■■■□□ 2.19
PNKP-213ENST00000599543 MYO5BQ9ULV0 1848 aa28.69■■■□□ 2.18
PNKP-213ENST00000599543 PPARGC1BQ86YN6 1023 aaKnown RBP28.69■■■□□ 2.18
PNKP-213ENST00000599543 HSPA1LP34931 641 aa28.68■■■□□ 2.18
PNKP-213ENST00000599543 IQGAP3Q86VI3 1631 aa28.68■■■□□ 2.18
PNKP-213ENST00000599543 E9PCH4 1651 aa28.67■■■□□ 2.18
PNKP-213ENST00000599543 ITGAEP38570 1179 aa28.67■■■□□ 2.18
PNKP-213ENST00000599543 XIRP1Q702N8 1843 aaKnown RBP28.66■■■□□ 2.18
PNKP-213ENST00000599543 ILDR2Q71H61 639 aa28.64■■■□□ 2.18
PNKP-213ENST00000599543 TMEM131LA2VDJ0 1609 aa28.61■■■□□ 2.17
PNKP-213ENST00000599543 SLC26A8Q96RN1 970 aa28.59■■■□□ 2.17
PNKP-213ENST00000599543 NUP155O75694 1391 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms