RNA–Protein interactions for RNA: ENST00000598159.6

SSBP4-205, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 747 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-205ENST00000598159 ABCC5O15440 1437 aa35.77■■■■□ 3.32
SSBP4-205ENST00000598159 PTPRTO14522 1441 aa35.76■■■■□ 3.32
SSBP4-205ENST00000598159 TCOF1Q13428 1488 aaKnown RBP35.75■■■■□ 3.31
SSBP4-205ENST00000598159 NCOA1Q15788 1441 aa35.74■■■■□ 3.31
SSBP4-205ENST00000598159 CERKQ8TCT0 537 aa35.74■■■■□ 3.31
SSBP4-205ENST00000598159 FBXO31Q5XUX0 539 aaPredicted RBP35.73■■■■□ 3.31
SSBP4-205ENST00000598159 SHANK2Q9UPX8 1470 aa35.73■■■■□ 3.31
SSBP4-205ENST00000598159 DUOX2Q9NRD8 1548 aa35.72■■■■□ 3.31
SSBP4-205ENST00000598159 CAMSAP1Q5T5Y3 1602 aa35.72■■■■□ 3.31
SSBP4-205ENST00000598159 MYO3AQ8NEV4 1616 aa35.72■■■■□ 3.31
SSBP4-205ENST00000598159 EIF2AK4Q9P2K8 1649 aaKnown RBP35.72■■■■□ 3.31
SSBP4-205ENST00000598159 DAPK1P53355 1430 aa35.71■■■■□ 3.31
SSBP4-205ENST00000598159 PZPP20742 1482 aa35.71■■■■□ 3.31
SSBP4-205ENST00000598159 RNF17Q9BXT8 1623 aaKnown RBP35.7■■■■□ 3.31
SSBP4-205ENST00000598159 ZNF142P52746 1687 aaPredicted RBP35.69■■■■□ 3.3
SSBP4-205ENST00000598159 RRP7BPQ9NSQ0 103 aa35.69■■■■□ 3.3
SSBP4-205ENST00000598159 CEP170BQ9Y4F5 1589 aaPredicted RBP35.68■■■■□ 3.3
SSBP4-205ENST00000598159 KIF15Q9NS87 1388 aa35.67■■■■□ 3.3
SSBP4-205ENST00000598159 CROCC2H7BZ55 1655 aa35.67■■■■□ 3.3
SSBP4-205ENST00000598159 DNMT1P26358 1616 aaKnown RBP35.67■■■■□ 3.3
SSBP4-205ENST00000598159 TNRQ92752 1358 aa35.66■■■■□ 3.3
SSBP4-205ENST00000598159 PKD2Q13563 968 aa35.66■■■■□ 3.3
SSBP4-205ENST00000598159 A2ML1A8K2U0 1454 aa35.64■■■■□ 3.3
SSBP4-205ENST00000598159 NCKAP5LQ9HCH0 1330 aa35.63■■■■□ 3.29
SSBP4-205ENST00000598159 PLA2R1Q13018 1463 aa35.63■■■■□ 3.29
SSBP4-205ENST00000598159 CHIC2Q9UKJ5 165 aa35.61■■■■□ 3.29
SSBP4-205ENST00000598159 ERBINQ96RT1 1412 aa35.6■■■■□ 3.29
SSBP4-205ENST00000598159 ANKRD30AQ9BXX3 1397 aa35.6■■■■□ 3.29
SSBP4-205ENST00000598159 ZC3H13Q5T200 1668 aaKnown RBP35.59■■■■□ 3.29
SSBP4-205ENST00000598159 ABCC3O15438 1527 aa35.59■■■■□ 3.29
SSBP4-205ENST00000598159 FAM50AQ14320 339 aaKnown RBP35.58■■■■□ 3.29
SSBP4-205ENST00000598159 MROH1Q8NDA8 1641 aa35.55■■■■□ 3.28
SSBP4-205ENST00000598159 THEMISQ8N1K5 641 aaPredicted RBP35.52■■■■□ 3.28
SSBP4-205ENST00000598159 NLRP1Q9C000 1473 aa35.52■■■■□ 3.28
SSBP4-205ENST00000598159 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.49■■■■□ 3.27
SSBP4-205ENST00000598159 CEP152O94986 1710 aa35.46■■■■□ 3.27
SSBP4-205ENST00000598159 KANK1Q14678 1352 aa35.46■■■■□ 3.27
SSBP4-205ENST00000598159 PRDM15P57071 1507 aaPredicted RBP35.46■■■■□ 3.27
SSBP4-205ENST00000598159 SPATA31D1Q6ZQQ2 1576 aa35.46■■■■□ 3.27
SSBP4-205ENST00000598159 ADGRL2O95490 1459 aa35.45■■■■□ 3.27
SSBP4-205ENST00000598159 CFAP65Q6ZU64 1925 aaKnown RBP35.44■■■■□ 3.26
SSBP4-205ENST00000598159 ERVK-7P63135 1459 aa35.43■■■■□ 3.26
SSBP4-205ENST00000598159 ANKLE2Q86XL3 938 aa35.43■■■■□ 3.26
SSBP4-205ENST00000598159 LTBP4Q8N2S1 1624 aa35.43■■■■□ 3.26
SSBP4-205ENST00000598159 UGGT1Q9NYU2 1555 aa35.42■■■■□ 3.26
SSBP4-205ENST00000598159 ARHGAP31Q2M1Z3 1444 aa35.42■■■■□ 3.26
SSBP4-205ENST00000598159 DEPDC5O75140 1603 aa35.41■■■■□ 3.26
SSBP4-205ENST00000598159 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.39■■■■□ 3.267e-7■■■■□ 20
SSBP4-205ENST00000598159 ZNF335Q9H4Z2 1342 aaPredicted RBP35.35■■■■□ 3.25
SSBP4-205ENST00000598159 POLR1AO95602 1720 aaPredicted RBP35.33■■■■□ 3.25
SSBP4-205ENST00000598159 PPARGC1BQ86YN6 1023 aaKnown RBP35.33■■■■□ 3.25
SSBP4-205ENST00000598159 ANKRD50Q9ULJ7 1429 aa35.32■■■■□ 3.24
SSBP4-205ENST00000598159 IQSEC2Q5JU85 1478 aa35.31■■■■□ 3.24
SSBP4-205ENST00000598159 LMTK2Q8IWU2 1503 aa35.3■■■■□ 3.24
SSBP4-205ENST00000598159 VWDEQ8N2E2 1590 aa35.3■■■■□ 3.24
SSBP4-205ENST00000598159 NEURL4Q96JN8 1562 aa35.27■■■■□ 3.24
SSBP4-205ENST00000598159 MED14O60244 1454 aa35.24■■■■□ 3.23
SSBP4-205ENST00000598159 ROCK1Q13464 1354 aa35.24■■■■□ 3.23
SSBP4-205ENST00000598159 NPHP4O75161 1426 aaPredicted RBP35.22■■■■□ 3.23
SSBP4-205ENST00000598159 UBR1Q8IWV7 1749 aa35.2■■■■□ 3.23
SSBP4-205ENST00000598159 ITGAEP38570 1179 aa35.17■■■■□ 3.22
SSBP4-205ENST00000598159 STAG3Q9UJ98 1225 aa35.16■■■■□ 3.22
SSBP4-205ENST00000598159 IDI1Q13907 227 aa35.15■■■■□ 3.22
SSBP4-205ENST00000598159 EFCAB6Q5THR3 1501 aa35.13■■■■□ 3.21
SSBP4-205ENST00000598159 TXNDC2Q86VQ3 553 aa35.13■■■■□ 3.21
SSBP4-205ENST00000598159 EID1Q9Y6B2 187 aa35.12■■■■□ 3.21
SSBP4-205ENST00000598159 NOS1P29475 1434 aa35.12■■■■□ 3.21
SSBP4-205ENST00000598159 SLC52A1Q9NWF4 448 aa35.11■■■■□ 3.21
SSBP4-205ENST00000598159 IQGAP1P46940 1657 aa35.11■■■■□ 3.21
SSBP4-205ENST00000598159 ARHGAP23Q9P227 1491 aa35.1■■■■□ 3.21
SSBP4-205ENST00000598159 SLIT1O75093 1534 aa35.1■■■■□ 3.21
SSBP4-205ENST00000598159 RPRD2Q5VT52 1461 aaKnown RBP35.09■■■■□ 3.21
SSBP4-205ENST00000598159 LTKP29376 864 aa35.09■■■■□ 3.21
SSBP4-205ENST00000598159 CPS1P31327 1500 aa35.09■■■■□ 3.21
SSBP4-205ENST00000598159 PIK3C2BO00750 1634 aa35.09■■■■□ 3.21
SSBP4-205ENST00000598159 SCAF11Q99590 1463 aaKnown RBP35.08■■■■□ 3.21
SSBP4-205ENST00000598159 UBAP1LF5GYI3 381 aa35.06■■■■□ 3.2
SSBP4-205ENST00000598159 KDM5AP29375 1690 aaKnown RBP35.05■■■■□ 3.2
SSBP4-205ENST00000598159 TMEM2Q9UHN6 1383 aa35.05■■■■□ 3.2
SSBP4-205ENST00000598159 UNC13BO14795 1591 aa35.04■■■■□ 3.2
SSBP4-205ENST00000598159 SYNMO15061 1565 aa35.04■■■■□ 3.2
SSBP4-205ENST00000598159 TET3O43151 1660 aa35.04■■■■□ 3.2
SSBP4-205ENST00000598159 RRBP1Q9P2E9 1410 aaKnown RBP35.02■■■■□ 3.2
SSBP4-205ENST00000598159 GCC2Q8IWJ2 1684 aa34.98■■■■□ 3.19
SSBP4-205ENST00000598159 NUP155O75694 1391 aa34.97■■■■□ 3.19
SSBP4-205ENST00000598159 TOM1O60784 492 aa34.94■■■■□ 3.18
SSBP4-205ENST00000598159 IQGAP3Q86VI3 1631 aa34.92■■■■□ 3.18
SSBP4-205ENST00000598159 ADGRB3O60242 1522 aa34.91■■■■□ 3.18
SSBP4-205ENST00000598159 HDGFP51858 240 aaKnown RBP34.89■■■■□ 3.18
SSBP4-205ENST00000598159 E9PCH4 1651 aa34.88■■■■□ 3.17
SSBP4-205ENST00000598159 STRCP1A6NGW2 1772 aa34.87■■■■□ 3.17
SSBP4-205ENST00000598159 LRRC7Q96NW7 1537 aa34.82■■■■□ 3.16
SSBP4-205ENST00000598159 CHGAP10645 457 aaKnown RBP34.8■■■■□ 3.16
SSBP4-205ENST00000598159 PIP4K2BP78356 416 aa34.79■■■■□ 3.16
SSBP4-205ENST00000598159 TMEM131LA2VDJ0 1609 aa34.78■■■■□ 3.16
SSBP4-205ENST00000598159 BCANQ96GW7 911 aa34.78■■■■□ 3.16
SSBP4-205ENST00000598159 SLC26A8Q96RN1 970 aa34.78■■■■□ 3.16
SSBP4-205ENST00000598159 NAIPQ13075 1403 aa34.78■■■■□ 3.16
SSBP4-205ENST00000598159 SCAF1Q9H7N4 1312 aaKnown RBP34.78■■■■□ 3.16
SSBP4-205ENST00000598159 MYO5BQ9ULV0 1848 aa34.77■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms