RNA–Protein interactions for RNA: ENST00000592535.5

APOC1-208, Transcript of apolipoprotein C1, humanhuman

TSL 1 (best)

Gene APOC1, Length 430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOC1-208ENST00000592535 EIF2AK4Q9P2K8 1649 aaKnown RBP21.63■■□□□ 1.05
APOC1-208ENST00000592535 ILDR1Q86SU0 546 aaPredicted RBP21.63■■□□□ 1.05
APOC1-208ENST00000592535 FAM135AQ9P2D6 1515 aa21.63■■□□□ 1.05
APOC1-208ENST00000592535 SHANK2Q9UPX8 1470 aa21.63■■□□□ 1.05
APOC1-208ENST00000592535 RNF17Q9BXT8 1623 aaKnown RBP21.62■■□□□ 1.05
APOC1-208ENST00000592535 DAPK1P53355 1430 aa21.62■■□□□ 1.05
APOC1-208ENST00000592535 ZNF142P52746 1687 aaPredicted RBP21.61■■□□□ 1.05
APOC1-208ENST00000592535 DUOX2Q9NRD8 1548 aa21.6■■□□□ 1.05
APOC1-208ENST00000592535 WASHC2CQ9Y4E1 1318 aa21.57■■□□□ 1.04
APOC1-208ENST00000592535 MROH1Q8NDA8 1641 aa21.57■■□□□ 1.04
APOC1-208ENST00000592535 CEP170BQ9Y4F5 1589 aaPredicted RBP21.57■■□□□ 1.04
APOC1-208ENST00000592535 CAMSAP1Q5T5Y3 1602 aa21.56■■□□□ 1.04
APOC1-208ENST00000592535 KIF15Q9NS87 1388 aa21.56■■□□□ 1.04
APOC1-208ENST00000592535 PZPP20742 1482 aa21.56■■□□□ 1.04
APOC1-208ENST00000592535 ZC3H13Q5T200 1668 aaKnown RBP21.56■■□□□ 1.04
APOC1-208ENST00000592535 NCOA1Q15788 1441 aa21.55■■□□□ 1.04
APOC1-208ENST00000592535 RRP7BPQ9NSQ0 103 aa21.54■■□□□ 1.04
APOC1-208ENST00000592535 CEP152O94986 1710 aa21.54■■□□□ 1.04
APOC1-208ENST00000592535 ABCC3O15438 1527 aa21.54■■□□□ 1.04
APOC1-208ENST00000592535 FBXO31Q5XUX0 539 aaPredicted RBP21.53■■□□□ 1.04
APOC1-208ENST00000592535 DMRT2Q9Y5R5 561 aa21.52■■□□□ 1.04
APOC1-208ENST00000592535 ERBINQ96RT1 1412 aa21.52■■□□□ 1.04
APOC1-208ENST00000592535 CHIC2Q9UKJ5 165 aa21.51■■□□□ 1.03
APOC1-208ENST00000592535 TNRQ92752 1358 aa21.5■■□□□ 1.03
APOC1-208ENST00000592535 PTPRTO14522 1441 aa21.5■■□□□ 1.03
APOC1-208ENST00000592535 FAM50AQ14320 339 aaKnown RBP21.5■■□□□ 1.03
APOC1-208ENST00000592535 A2ML1A8K2U0 1454 aa21.5■■□□□ 1.03
APOC1-208ENST00000592535 ANKRD30AQ9BXX3 1397 aa21.48■■□□□ 1.03
APOC1-208ENST00000592535 PRDM15P57071 1507 aaPredicted RBP21.48■■□□□ 1.03
APOC1-208ENST00000592535 DEPDC5O75140 1603 aa21.47■■□□□ 1.03
APOC1-208ENST00000592535 CFAP65Q6ZU64 1925 aaKnown RBP21.47■■□□□ 1.03
APOC1-208ENST00000592535 ADGRL2O95490 1459 aa21.46■■□□□ 1.03
APOC1-208ENST00000592535 PLA2R1Q13018 1463 aa21.46■■□□□ 1.03
APOC1-208ENST00000592535 FBXO41Q8TF61 875 aa21.46■■□□□ 1.03
APOC1-208ENST00000592535 NCKAP5LQ9HCH0 1330 aa21.45■■□□□ 1.02
APOC1-208ENST00000592535 PPARGC1BQ86YN6 1023 aaKnown RBP21.44■■□□□ 1.02
APOC1-208ENST00000592535 SPATA31D1Q6ZQQ2 1576 aa21.44■■□□□ 1.02
APOC1-208ENST00000592535 CERKQ8TCT0 537 aa21.43■■□□□ 1.02
APOC1-208ENST00000592535 ERVK-7P63135 1459 aa21.42■■□□□ 1.02
APOC1-208ENST00000592535 NLRP1Q9C000 1473 aa21.41■■□□□ 1.02
APOC1-208ENST00000592535 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.4■■□□□ 1.021e-9■□□□□ 10.7
APOC1-208ENST00000592535 POLR1AO95602 1720 aaPredicted RBP21.4■■□□□ 1.02
APOC1-208ENST00000592535 PKD2Q13563 968 aa21.39■■□□□ 1.01
APOC1-208ENST00000592535 VWDEQ8N2E2 1590 aa21.37■■□□□ 1.01
APOC1-208ENST00000592535 UGGT1Q9NYU2 1555 aa21.37■■□□□ 1.01
APOC1-208ENST00000592535 ARHGAP31Q2M1Z3 1444 aa21.37■■□□□ 1.01
APOC1-208ENST00000592535 KANK1Q14678 1352 aa21.36■■□□□ 1.01
APOC1-208ENST00000592535 LTBP4Q8N2S1 1624 aa21.36■■□□□ 1.01
APOC1-208ENST00000592535 ANKRD50Q9ULJ7 1429 aa21.35■■□□□ 1.01
APOC1-208ENST00000592535 NEURL4Q96JN8 1562 aa21.35■■□□□ 1.01
APOC1-208ENST00000592535 LMTK2Q8IWU2 1503 aa21.34■■□□□ 1.01
APOC1-208ENST00000592535 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.34■■□□□ 1.01
APOC1-208ENST00000592535 THEMISQ8N1K5 641 aaPredicted RBP21.32■■□□□ 1
APOC1-208ENST00000592535 UBR1Q8IWV7 1749 aa21.32■■□□□ 1
APOC1-208ENST00000592535 EFCAB6Q5THR3 1501 aa21.29■■□□□ 1
APOC1-208ENST00000592535 ZNF335Q9H4Z2 1342 aaPredicted RBP21.29■■□□□ 1
APOC1-208ENST00000592535 ROCK1Q13464 1354 aa21.28■■□□□ 1
APOC1-208ENST00000592535 ITGAEP38570 1179 aa21.28■■□□□ 1
APOC1-208ENST00000592535 ANKLE2Q86XL3 938 aa21.27■■□□□ 1
APOC1-208ENST00000592535 UNC13BO14795 1591 aa21.27■□□□□ 0.99
APOC1-208ENST00000592535 PIK3C2BO00750 1634 aa21.26■□□□□ 0.99
APOC1-208ENST00000592535 SYNMO15061 1565 aa21.24■□□□□ 0.99
APOC1-208ENST00000592535 MED14O60244 1454 aa21.24■□□□□ 0.99
APOC1-208ENST00000592535 TET3O43151 1660 aa21.24■□□□□ 0.99
APOC1-208ENST00000592535 NPHP4O75161 1426 aaPredicted RBP21.23■□□□□ 0.99
APOC1-208ENST00000592535 IQGAP1P46940 1657 aa21.23■□□□□ 0.99
APOC1-208ENST00000592535 RRBP1Q9P2E9 1410 aaKnown RBP21.22■□□□□ 0.99
APOC1-208ENST00000592535 GCC2Q8IWJ2 1684 aa21.22■□□□□ 0.99
APOC1-208ENST00000592535 IQSEC2Q5JU85 1478 aa21.22■□□□□ 0.99
APOC1-208ENST00000592535 NOS1P29475 1434 aa21.21■□□□□ 0.99
APOC1-208ENST00000592535 RPRD2Q5VT52 1461 aaKnown RBP21.19■□□□□ 0.98
APOC1-208ENST00000592535 ARHGAP23Q9P227 1491 aa21.19■□□□□ 0.98
APOC1-208ENST00000592535 SLIT1O75093 1534 aa21.19■□□□□ 0.98
APOC1-208ENST00000592535 IQGAP3Q86VI3 1631 aa21.18■□□□□ 0.98
APOC1-208ENST00000592535 KDM5AP29375 1690 aaKnown RBP21.18■□□□□ 0.98
APOC1-208ENST00000592535 IDI1Q13907 227 aa21.17■□□□□ 0.98
APOC1-208ENST00000592535 E9PCH4 1651 aa21.16■□□□□ 0.98
APOC1-208ENST00000592535 SCAF11Q99590 1463 aaKnown RBP21.16■□□□□ 0.98
APOC1-208ENST00000592535 LTKP29376 864 aa21.14■□□□□ 0.97
APOC1-208ENST00000592535 STAG3Q9UJ98 1225 aa21.14■□□□□ 0.97
APOC1-208ENST00000592535 ADGRB3O60242 1522 aa21.14■□□□□ 0.97
APOC1-208ENST00000592535 CPS1P31327 1500 aa21.14■□□□□ 0.97
APOC1-208ENST00000592535 TMEM2Q9UHN6 1383 aa21.12■□□□□ 0.97
APOC1-208ENST00000592535 TXNDC2Q86VQ3 553 aa21.12■□□□□ 0.97
APOC1-208ENST00000592535 MYO5BQ9ULV0 1848 aa21.12■□□□□ 0.97
APOC1-208ENST00000592535 STRCP1A6NGW2 1772 aa21.12■□□□□ 0.97
APOC1-208ENST00000592535 NUP155O75694 1391 aa21.11■□□□□ 0.97
APOC1-208ENST00000592535 SLC52A1Q9NWF4 448 aa21.11■□□□□ 0.97
APOC1-208ENST00000592535 EID1Q9Y6B2 187 aa21.09■□□□□ 0.97
APOC1-208ENST00000592535 NAIPQ13075 1403 aa21.06■□□□□ 0.96
APOC1-208ENST00000592535 TMEM131LA2VDJ0 1609 aa21.06■□□□□ 0.96
APOC1-208ENST00000592535 UBAP1LF5GYI3 381 aa21.05■□□□□ 0.96
APOC1-208ENST00000592535 SPHKAPQ2M3C7 1700 aa21.01■□□□□ 0.95
APOC1-208ENST00000592535 LRRC7Q96NW7 1537 aa21■□□□□ 0.95
APOC1-208ENST00000592535 HFM1A2PYH4 1435 aa21■□□□□ 0.95
APOC1-208ENST00000592535 ZFYVE9O95405 1425 aa21■□□□□ 0.95
APOC1-208ENST00000592535 RIMS2Q9UQ26 1411 aa20.98■□□□□ 0.95
APOC1-208ENST00000592535 CHGAP10645 457 aaKnown RBP20.98■□□□□ 0.95
APOC1-208ENST00000592535 XIRP1Q702N8 1843 aaKnown RBP20.97■□□□□ 0.95
APOC1-208ENST00000592535 SLC26A8Q96RN1 970 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms