RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 TNRQ92752 1358 aa20.68■□□□□ 0.9
SS18-219ENST00000581570 KIF3BO15066 747 aa20.66■□□□□ 0.9
SS18-219ENST00000581570 ANKLE2Q86XL3 938 aa20.66■□□□□ 0.9
SS18-219ENST00000581570 SHANK2Q9UPX8 1470 aa20.66■□□□□ 0.9
SS18-219ENST00000581570 CPS1P31327 1500 aa20.66■□□□□ 0.9
SS18-219ENST00000581570 ADGBQ8N7X0 1667 aa20.65■□□□□ 0.9
SS18-219ENST00000581570 RTEL1-TNFRSF6BF6WH68 1400 aa20.65■□□□□ 0.9
SS18-219ENST00000581570 MED1Q15648 1581 aaPredicted RBP20.64■□□□□ 0.9
SS18-219ENST00000581570 MBD5Q9P267 1494 aa20.64■□□□□ 0.89
SS18-219ENST00000581570 THEMISQ8N1K5 641 aaPredicted RBP20.63■□□□□ 0.89
SS18-219ENST00000581570 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.61■□□□□ 0.89
SS18-219ENST00000581570 WASHC2CQ9Y4E1 1318 aa20.61■□□□□ 0.89
SS18-219ENST00000581570 NEURL4Q96JN8 1562 aa20.6■□□□□ 0.89
SS18-219ENST00000581570 PZPP20742 1482 aa20.59■□□□□ 0.89
SS18-219ENST00000581570 MIA2Q96PC5 1412 aa20.58■□□□□ 0.88
SS18-219ENST00000581570 TIAM1Q13009 1591 aa20.57■□□□□ 0.88
SS18-219ENST00000581570 KDM5DQ9BY66 1539 aa20.56■□□□□ 0.88
SS18-219ENST00000581570 POLR1AO95602 1720 aaPredicted RBP20.56■□□□□ 0.88
SS18-219ENST00000581570 NPHP4O75161 1426 aaPredicted RBP20.55■□□□□ 0.88
SS18-219ENST00000581570 RSPH4AQ5TD94 716 aa20.55■□□□□ 0.88
SS18-219ENST00000581570 VWDEQ8N2E2 1590 aa20.54■□□□□ 0.88
SS18-219ENST00000581570 CEP162Q5TB80 1403 aa20.53■□□□□ 0.88
SS18-219ENST00000581570 FAM135AQ9P2D6 1515 aa20.53■□□□□ 0.88
SS18-219ENST00000581570 MED14O60244 1454 aa20.53■□□□□ 0.88
SS18-219ENST00000581570 NLRP1Q9C000 1473 aa20.53■□□□□ 0.88
SS18-219ENST00000581570 UGGT1Q9NYU2 1555 aa20.52■□□□□ 0.88
SS18-219ENST00000581570 CCDC141Q6ZP82 1450 aa20.52■□□□□ 0.88
SS18-219ENST00000581570 EHBP1L1Q8N3D4 1523 aa20.52■□□□□ 0.87
SS18-219ENST00000581570 TSPY4P0CV99 314 aa20.49■□□□□ 0.87
SS18-219ENST00000581570 TSPY10P0CW01 314 aa20.49■□□□□ 0.87
SS18-219ENST00000581570 FOXD1Q16676 465 aa20.49■□□□□ 0.87
SS18-219ENST00000581570 ALKQ9UM73 1620 aa20.49■□□□□ 0.87
SS18-219ENST00000581570 DEPDC5O75140 1603 aa20.47■□□□□ 0.87
SS18-219ENST00000581570 CAMSAP2Q08AD1 1489 aa20.46■□□□□ 0.87
SS18-219ENST00000581570 LRRC7Q96NW7 1537 aa20.45■□□□□ 0.86
SS18-219ENST00000581570 NCOA2Q15596 1464 aa20.43■□□□□ 0.86
SS18-219ENST00000581570 IQGAP1P46940 1657 aa20.42■□□□□ 0.86
SS18-219ENST00000581570 ABCC3O15438 1527 aa20.37■□□□□ 0.85
SS18-219ENST00000581570 RGS17Q9UGC6 210 aaPredicted RBP20.37■□□□□ 0.85
SS18-219ENST00000581570 ARHGEF5Q12774 1597 aa20.37■□□□□ 0.85
SS18-219ENST00000581570 ERVK-7P63135 1459 aa20.37■□□□□ 0.85
SS18-219ENST00000581570 STRCP1A6NGW2 1772 aa20.36■□□□□ 0.85
SS18-219ENST00000581570 RNF17Q9BXT8 1623 aaKnown RBP20.36■□□□□ 0.85
SS18-219ENST00000581570 TXNDC2Q86VQ3 553 aa20.36■□□□□ 0.85
SS18-219ENST00000581570 SYNMO15061 1565 aa20.34■□□□□ 0.85
SS18-219ENST00000581570 LTKP29376 864 aa20.34■□□□□ 0.85
SS18-219ENST00000581570 SCAF11Q99590 1463 aaKnown RBP20.33■□□□□ 0.85
SS18-219ENST00000581570 EID1Q9Y6B2 187 aa20.31■□□□□ 0.84
SS18-219ENST00000581570 ZC3H13Q5T200 1668 aaKnown RBP20.3■□□□□ 0.84
SS18-219ENST00000581570 MAST1Q9Y2H9 1570 aa20.27■□□□□ 0.84
SS18-219ENST00000581570 ARHGAP23Q9P227 1491 aa20.27■□□□□ 0.84
SS18-219ENST00000581570 FAM135BQ49AJ0 1406 aa20.27■□□□□ 0.83
SS18-219ENST00000581570 UBR1Q8IWV7 1749 aa20.26■□□□□ 0.83
SS18-219ENST00000581570 SLIT1O75093 1534 aa20.26■□□□□ 0.83
SS18-219ENST00000581570 EIF2AK4Q9P2K8 1649 aaKnown RBP20.25■□□□□ 0.83
SS18-219ENST00000581570 POTEAQ6S8J7 498 aa20.25■□□□□ 0.83
SS18-219ENST00000581570 MROH1Q8NDA8 1641 aa20.24■□□□□ 0.83
SS18-219ENST00000581570 ARHGAP31Q2M1Z3 1444 aa20.23■□□□□ 0.83
SS18-219ENST00000581570 STAG3Q9UJ98 1225 aa20.23■□□□□ 0.83
SS18-219ENST00000581570 LRRC9Q6ZRR7 1453 aa20.22■□□□□ 0.83
SS18-219ENST00000581570 TMEM94Q12767 1356 aa20.21■□□□□ 0.83
SS18-219ENST00000581570 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.21■□□□□ 0.83
SS18-219ENST00000581570 CEP152O94986 1710 aa20.21■□□□□ 0.83
SS18-219ENST00000581570 DUOX2Q9NRD8 1548 aa20.21■□□□□ 0.83
SS18-219ENST00000581570 TMEM2Q9UHN6 1383 aa20.21■□□□□ 0.83
SS18-219ENST00000581570 CFAP65Q6ZU64 1925 aaKnown RBP20.2■□□□□ 0.82
SS18-219ENST00000581570 KCNA6P17658 529 aa20.2■□□□□ 0.82
SS18-219ENST00000581570 MYOM3Q5VTT5 1437 aa20.19■□□□□ 0.82
SS18-219ENST00000581570 PROSER2Q86WR7 435 aaPredicted RBP20.19■□□□□ 0.82
SS18-219ENST00000581570 KANK4Q5T7N3 995 aaPredicted RBP20.18■□□□□ 0.82
SS18-219ENST00000581570 RRP7BPQ9NSQ0 103 aa20.18■□□□□ 0.82
SS18-219ENST00000581570 KIF15Q9NS87 1388 aa20.18■□□□□ 0.82
SS18-219ENST00000581570 RBM33Q96EV2 1170 aaKnown RBP20.17■□□□□ 0.82
SS18-219ENST00000581570 SLC26A8Q96RN1 970 aa20.17■□□□□ 0.82
SS18-219ENST00000581570 XIRP1Q702N8 1843 aaKnown RBP20.17■□□□□ 0.82
SS18-219ENST00000581570 IDI1Q13907 227 aa20.16■□□□□ 0.82
SS18-219ENST00000581570 KANK1Q14678 1352 aa20.14■□□□□ 0.81
SS18-219ENST00000581570 PRDM15P57071 1507 aaPredicted RBP20.13■□□□□ 0.81
SS18-219ENST00000581570 VPS8Q8N3P4 1428 aa20.13■□□□□ 0.81
SS18-219ENST00000581570 ERBINQ96RT1 1412 aa20.13■□□□□ 0.81
SS18-219ENST00000581570 PIK3C2BO00750 1634 aa20.13■□□□□ 0.81
SS18-219ENST00000581570 EFCAB6Q5THR3 1501 aa20.11■□□□□ 0.81
SS18-219ENST00000581570 BCANQ96GW7 911 aa20.1■□□□□ 0.81
SS18-219ENST00000581570 ABCC5O15440 1437 aa20.1■□□□□ 0.81
SS18-219ENST00000581570 ROBO1Q9Y6N7 1651 aa20.1■□□□□ 0.81
SS18-219ENST00000581570 MAP3K1Q13233 1512 aa20.09■□□□□ 0.81
SS18-219ENST00000581570 SLAIN2Q9P270 581 aa20.09■□□□□ 0.81
SS18-219ENST00000581570 TET3O43151 1660 aa20.08■□□□□ 0.81
SS18-219ENST00000581570 MSH6P52701 1360 aa20.08■□□□□ 0.8
SS18-219ENST00000581570 JCADQ9P266 1359 aa20.06■□□□□ 0.8
SS18-219ENST00000581570 SLC52A1Q9NWF4 448 aa20.05■□□□□ 0.8
SS18-219ENST00000581570 NKTRP30414 1462 aaKnown RBP20.05■□□□□ 0.8
SS18-219ENST00000581570 CHIC2Q9UKJ5 165 aa20.04■□□□□ 0.8
SS18-219ENST00000581570 KDM5AP29375 1690 aaKnown RBP20.03■□□□□ 0.8
SS18-219ENST00000581570 LMTK2Q8IWU2 1503 aa20.03■□□□□ 0.8
SS18-219ENST00000581570 NOS1P29475 1434 aa20.02■□□□□ 0.8
SS18-219ENST00000581570 DAPK1P53355 1430 aa20.02■□□□□ 0.8
SS18-219ENST00000581570 ANKRD30AQ9BXX3 1397 aa20.01■□□□□ 0.79
SS18-219ENST00000581570 LOC105371045A0A1W2PR82 267 aa20.01■□□□□ 0.79
SS18-219ENST00000581570 NWD1Q149M9 1564 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms