RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PLXNC1O60486 1568 aa13.91□□□□□ -0.18
VPS53-220ENST00000576149 ZCCHC11Q5TAX3 1644 aaKnown RBP13.91□□□□□ -0.18
VPS53-220ENST00000576149 PLCH2O75038 1416 aa13.91□□□□□ -0.18
VPS53-220ENST00000576149 NEFLP07196 543 aa13.9□□□□□ -0.18
VPS53-220ENST00000576149 DCAF11Q8TEB1 546 aa13.89□□□□□ -0.19
VPS53-220ENST00000576149 CARD11Q9BXL7 1154 aa13.89□□□□□ -0.19
VPS53-220ENST00000576149 DHX29Q7Z478 1369 aaKnown RBP13.88□□□□□ -0.19
VPS53-220ENST00000576149 EIF5BO60841 1220 aaKnown RBP13.88□□□□□ -0.19
VPS53-220ENST00000576149 EFCAB2Q5VUJ9 269 aa13.88□□□□□ -0.19
VPS53-220ENST00000576149 MRS2Q9HD23 443 aa13.88□□□□□ -0.19
VPS53-220ENST00000576149 KDM2AQ9Y2K7 1162 aa13.88□□□□□ -0.19
VPS53-220ENST00000576149 DUOX2Q9NRD8 1548 aa13.87□□□□□ -0.19
VPS53-220ENST00000576149 CCDC144AA2RUR9 1427 aa13.87□□□□□ -0.19
VPS53-220ENST00000576149 IQGAP3Q86VI3 1631 aa13.87□□□□□ -0.19
VPS53-220ENST00000576149 BCANQ96GW7 911 aa13.86□□□□□ -0.19
VPS53-220ENST00000576149 ARXQ96QS3 562 aa13.86□□□□□ -0.19
VPS53-220ENST00000576149 PLA2R1Q13018 1463 aa13.86□□□□□ -0.19
VPS53-220ENST00000576149 ERBINQ96RT1 1412 aa13.85□□□□□ -0.19
VPS53-220ENST00000576149 ROCK2O75116 1388 aaKnown RBP13.85□□□□□ -0.19
VPS53-220ENST00000576149 MAGI2Q86UL8 1455 aa13.85□□□□□ -0.19
VPS53-220ENST00000576149 ABCC1P33527 1531 aa13.85□□□□□ -0.19
VPS53-220ENST00000576149 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.84□□□□□ -0.19
VPS53-220ENST00000576149 FAM9BQ8IZU0 186 aa13.84□□□□□ -0.19
VPS53-220ENST00000576149 PRAG1Q86YV5 1406 aa13.83□□□□□ -0.2
VPS53-220ENST00000576149 POLR3GLQ9BT43 218 aa13.83□□□□□ -0.2
VPS53-220ENST00000576149 ATP10AO60312 1499 aa13.83□□□□□ -0.2
VPS53-220ENST00000576149 ST20-MTHFSA0A0A6YYL1 179 aa13.82□□□□□ -0.2
VPS53-220ENST00000576149 TRAPPC8Q9Y2L5 1435 aa13.82□□□□□ -0.2
VPS53-220ENST00000576149 ARAP3Q8WWN8 1544 aa13.82□□□□□ -0.2
VPS53-220ENST00000576149 TSHZ2Q9NRE2 1034 aa13.81□□□□□ -0.2
VPS53-220ENST00000576149 TRPM1Q7Z4N2 1603 aa13.81□□□□□ -0.2
VPS53-220ENST00000576149 ZBED9Q6R2W3 1325 aa13.8□□□□□ -0.2
VPS53-220ENST00000576149 A2MP01023 1474 aa13.8□□□□□ -0.2
VPS53-220ENST00000576149 RTEL1-TNFRSF6BF6WH68 1400 aa13.79□□□□□ -0.2
VPS53-220ENST00000576149 GPRASP1Q5JY77 1395 aa13.79□□□□□ -0.2
VPS53-220ENST00000576149 RGL3Q3MIN7 710 aa13.79□□□□□ -0.2
VPS53-220ENST00000576149 SPAG9O60271 1321 aaKnown RBP13.77□□□□□ -0.21
VPS53-220ENST00000576149 WDR7Q9Y4E6 1490 aa13.77□□□□□ -0.21
VPS53-220ENST00000576149 NBPF1Q3BBV0 1214 aa13.75□□□□□ -0.21
VPS53-220ENST00000576149 LAMC1P11047 1609 aa13.75□□□□□ -0.21
VPS53-220ENST00000576149 ZFYVE16Q7Z3T8 1539 aa13.75□□□□□ -0.21
VPS53-220ENST00000576149 AFAP1Q8N556 730 aa13.75□□□□□ -0.21
VPS53-220ENST00000576149 E9PCH4 1651 aa13.74□□□□□ -0.21
VPS53-220ENST00000576149 KTN1Q86UP2 1357 aaKnown RBP13.73□□□□□ -0.21
VPS53-220ENST00000576149 EIF2AK4Q9P2K8 1649 aaKnown RBP13.73□□□□□ -0.21
VPS53-220ENST00000576149 PRDM15P57071 1507 aaPredicted RBP13.73□□□□□ -0.21
VPS53-220ENST00000576149 CNGB1Q14028 1251 aaPredicted RBP13.73□□□□□ -0.21
VPS53-220ENST00000576149 ABCA9Q8IUA7 1624 aa13.72□□□□□ -0.21
VPS53-220ENST00000576149 ERICH6BQ5W0A0 696 aa13.72□□□□□ -0.21
VPS53-220ENST00000576149 FANCAO15360 1455 aa13.72□□□□□ -0.21
VPS53-220ENST00000576149 PNISRQ8TF01 805 aaKnown RBP13.71□□□□□ -0.21
VPS53-220ENST00000576149 RALBP1Q15311 655 aa13.71□□□□□ -0.22
VPS53-220ENST00000576149 AMER1Q5JTC6 1135 aaPredicted RBP13.71□□□□□ -0.22
VPS53-220ENST00000576149 DEPDC5O75140 1603 aa13.7□□□□□ -0.22
VPS53-220ENST00000576149 TMC1Q8TDI8 760 aa13.7□□□□□ -0.22
VPS53-220ENST00000576149 TESK2Q96S53 571 aa13.7□□□□□ -0.22
VPS53-220ENST00000576149 COL17A1Q9UMD9 1497 aaPredicted RBP13.69□□□□□ -0.22
VPS53-220ENST00000576149 INO80Q9ULG1 1556 aaPredicted RBP13.69□□□□□ -0.22
VPS53-220ENST00000576149 IRX6P78412 446 aaPredicted RBP13.69□□□□□ -0.22
VPS53-220ENST00000576149 MYBBP1AQ9BQG0 1328 aaKnown RBP13.69□□□□□ -0.22
VPS53-220ENST00000576149 TRPM2O94759 1503 aa13.69□□□□□ -0.22
VPS53-220ENST00000576149 ATP7AQ04656 1500 aa13.69□□□□□ -0.22
VPS53-220ENST00000576149 BRD4O60885 1362 aaPredicted RBP13.69□□□□□ -0.22
VPS53-220ENST00000576149 PTPRTO14522 1441 aa13.68□□□□□ -0.22
VPS53-220ENST00000576149 KLHL34Q8N239 644 aa13.68□□□□□ -0.22
VPS53-220ENST00000576149 RNF17Q9BXT8 1623 aaKnown RBP13.67□□□□□ -0.22
VPS53-220ENST00000576149 ASXL2Q76L83 1435 aa13.67□□□□□ -0.22
VPS53-220ENST00000576149 ADGRL1O94910 1474 aa13.67□□□□□ -0.22
VPS53-220ENST00000576149 SMG6Q86US8 1419 aaKnown RBP13.67□□□□□ -0.22
VPS53-220ENST00000576149 SCAPERQ9BY12 1400 aa13.67□□□□□ -0.22
VPS53-220ENST00000576149 LRPPRCP42704 1394 aaKnown RBP13.67□□□□□ -0.22
VPS53-220ENST00000576149 PER1O15534 1290 aaPredicted RBP13.66□□□□□ -0.22
VPS53-220ENST00000576149 VWDEQ8N2E2 1590 aa13.66□□□□□ -0.22
VPS53-220ENST00000576149 DISP3Q9P2K9 1392 aa13.66□□□□□ -0.22
VPS53-220ENST00000576149 TET3O43151 1660 aa13.66□□□□□ -0.22
VPS53-220ENST00000576149 PARD3Q8TEW0 1356 aa13.66□□□□□ -0.22
VPS53-220ENST00000576149 STAC3Q96MF2 364 aa13.65□□□□□ -0.22
VPS53-220ENST00000576149 SPHKAPQ2M3C7 1700 aa13.65□□□□□ -0.22
VPS53-220ENST00000576149 KANK1Q14678 1352 aa13.65□□□□□ -0.22
VPS53-220ENST00000576149 MADDQ8WXG6 1647 aa13.64□□□□□ -0.23
VPS53-220ENST00000576149 CEP152O94986 1710 aa13.64□□□□□ -0.23
VPS53-220ENST00000576149 WASHC2CQ9Y4E1 1318 aa13.64□□□□□ -0.23
VPS53-220ENST00000576149 PPP4R2Q9NY27 417 aa13.64□□□□□ -0.23
VPS53-220ENST00000576149 TMF1P82094 1093 aa13.63□□□□□ -0.23
VPS53-220ENST00000576149 CLTCL1P53675 1640 aa13.63□□□□□ -0.23
VPS53-220ENST00000576149 KIF3BO15066 747 aa13.63□□□□□ -0.23
VPS53-220ENST00000576149 NUDCQ9Y266 331 aa13.63□□□□□ -0.23
VPS53-220ENST00000576149 PLEKHG5O94827 1062 aa13.62□□□□□ -0.23
VPS53-220ENST00000576149 NLRP13Q86W25 1043 aa13.62□□□□□ -0.23
VPS53-220ENST00000576149 MROH1Q8NDA8 1641 aa13.61□□□□□ -0.23
VPS53-220ENST00000576149 NEURL4Q96JN8 1562 aa13.6□□□□□ -0.23
VPS53-220ENST00000576149 BCL11AQ9H165 835 aa13.6□□□□□ -0.23
VPS53-220ENST00000576149 MYT1LQ9UL68 1186 aa13.6□□□□□ -0.23
VPS53-220ENST00000576149 IQGAP1P46940 1657 aa13.6□□□□□ -0.23
VPS53-220ENST00000576149 OSCARQ8IYS5 282 aa13.59□□□□□ -0.23
VPS53-220ENST00000576149 PANK3Q9H999 370 aa13.59□□□□□ -0.23
VPS53-220ENST00000576149 RNF123Q5XPI4 1314 aa13.59□□□□□ -0.23
VPS53-220ENST00000576149 KIDINS220Q9ULH0 1771 aa13.58□□□□□ -0.24
VPS53-220ENST00000576149 RBM19Q9Y4C8 960 aaKnown RBP13.58□□□□□ -0.24
VPS53-220ENST00000576149 ZNF518AQ6AHZ1 1483 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms