RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NISCHQ9Y2I1 1504 aa21.48■■□□□ 1.03
VPS53-220ENST00000576149 CCDC180Q9P1Z9 1646 aa18.39■□□□□ 0.53
VPS53-220ENST00000576149 ZCCHC6Q5VYS8 1495 aaKnown RBP18.14■□□□□ 0.49
VPS53-220ENST00000576149 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
VPS53-220ENST00000576149 DCAF1Q9Y4B6 1507 aa17.71■□□□□ 0.43
VPS53-220ENST00000576149 DCAF8L2P0C7V8 631 aa17.68■□□□□ 0.42
VPS53-220ENST00000576149 SUPT5HO00267 1087 aaKnown RBP17.6■□□□□ 0.41
VPS53-220ENST00000576149 MYO15BQ96JP2 1530 aa17.28■□□□□ 0.36
VPS53-220ENST00000576149 CHIC1Q5VXU3 224 aa17.1■□□□□ 0.33
VPS53-220ENST00000576149 SCRIBQ14160 1630 aa17.09■□□□□ 0.33
VPS53-220ENST00000576149 ABCC9O60706 1549 aa17.07■□□□□ 0.32
VPS53-220ENST00000576149 NACADO15069 1562 aa17.04■□□□□ 0.32
VPS53-220ENST00000576149 RSF1Q96T23 1441 aaPredicted RBP16.91■□□□□ 0.3
VPS53-220ENST00000576149 RB1CC1Q8TDY2 1594 aa16.77■□□□□ 0.28
VPS53-220ENST00000576149 CECR2Q9BXF3 1484 aa16.7■□□□□ 0.26
VPS53-220ENST00000576149 MROH2BQ7Z745 1585 aa16.65■□□□□ 0.26
VPS53-220ENST00000576149 WIZO95785 1651 aa16.53■□□□□ 0.24
VPS53-220ENST00000576149 BAZ1AQ9NRL2 1556 aaPredicted RBP16.52■□□□□ 0.23
VPS53-220ENST00000576149 LOC105371045A0A1W2PR82 267 aa16.51■□□□□ 0.23
VPS53-220ENST00000576149 TRIM41Q8WV44 630 aa16.47■□□□□ 0.23
VPS53-220ENST00000576149 UNC13AQ9UPW8 1703 aa16.47■□□□□ 0.23
VPS53-220ENST00000576149 SMARCA4P51532 1647 aa16.38■□□□□ 0.21
VPS53-220ENST00000576149 AEBP2Q6ZN18 517 aaPredicted RBP16.36■□□□□ 0.21
VPS53-220ENST00000576149 TOP2AP11388 1531 aaKnown RBP16.33■□□□□ 0.2
VPS53-220ENST00000576149 PCGF6Q9BYE7 350 aa16.32■□□□□ 0.2
VPS53-220ENST00000576149 BICRAQ9NZM4 1560 aa16.3■□□□□ 0.2
VPS53-220ENST00000576149 EIF4G1Q04637 1599 aaKnown RBP16.3■□□□□ 0.2
VPS53-220ENST00000576149 HRCP23327 699 aa16.26■□□□□ 0.19
VPS53-220ENST00000576149 PABPN1Q86U42 306 aaKnown RBP eCLIP16.23■□□□□ 0.19
VPS53-220ENST00000576149 FAM9AQ8IZU1 332 aaPredicted RBP16.23■□□□□ 0.19
VPS53-220ENST00000576149 CCDC88BA6NC98 1476 aa16.23■□□□□ 0.19
VPS53-220ENST00000576149 SMARCA2P51531 1590 aa16.22■□□□□ 0.19
VPS53-220ENST00000576149 SLC24A1O60721 1099 aa16.21■□□□□ 0.19
VPS53-220ENST00000576149 PEG3Q9GZU2 1588 aa16.14■□□□□ 0.17
VPS53-220ENST00000576149 TRIM26Q12899 539 aaPredicted RBP16.14■□□□□ 0.17
VPS53-220ENST00000576149 ABCC8Q09428 1581 aa16.07■□□□□ 0.16
VPS53-220ENST00000576149 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
VPS53-220ENST00000576149 ATAD2BQ9ULI0 1458 aa16.01■□□□□ 0.15
VPS53-220ENST00000576149 BAZ1BQ9UIG0 1483 aaKnown RBP15.93■□□□□ 0.14
VPS53-220ENST00000576149 SOGA1O94964 1423 aa15.91■□□□□ 0.14
VPS53-220ENST00000576149 EEA1Q15075 1411 aa15.89■□□□□ 0.13
VPS53-220ENST00000576149 WRNQ14191 1432 aaPredicted RBP eCLIP15.88■□□□□ 0.13
VPS53-220ENST00000576149 PPARGC1BQ86YN6 1023 aaKnown RBP15.86■□□□□ 0.13
VPS53-220ENST00000576149 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.12
VPS53-220ENST00000576149 RUSC2Q8N2Y8 1516 aa15.82■□□□□ 0.12
VPS53-220ENST00000576149 TNIKQ9UKE5 1360 aa15.8■□□□□ 0.12
VPS53-220ENST00000576149 SYNJ1O43426 1573 aa15.8■□□□□ 0.12
VPS53-220ENST00000576149 CEP162Q5TB80 1403 aa15.77■□□□□ 0.11
VPS53-220ENST00000576149 NCAPD3P42695 1498 aa15.76■□□□□ 0.11
VPS53-220ENST00000576149 HMGXB3Q12766 1538 aa15.75■□□□□ 0.11
VPS53-220ENST00000576149 ZEB1P37275 1124 aaPredicted RBP15.74■□□□□ 0.11
VPS53-220ENST00000576149 GOLGA3Q08378 1498 aa15.73■□□□□ 0.11
VPS53-220ENST00000576149 UBTFP17480 764 aaKnown RBP15.69■□□□□ 0.1
VPS53-220ENST00000576149 CEP164Q9UPV0 1460 aa15.67■□□□□ 0.1
VPS53-220ENST00000576149 KIF21BO75037 1637 aa15.66■□□□□ 0.1
VPS53-220ENST00000576149 TOP2BQ02880 1626 aa15.66■□□□□ 0.1
VPS53-220ENST00000576149 BIVM-ERCC5R4GMW8 1640 aa15.61■□□□□ 0.09
VPS53-220ENST00000576149 CFTRP13569 1480 aa15.58■□□□□ 0.08
VPS53-220ENST00000576149 RAPGEF2Q9Y4G8 1499 aa15.54■□□□□ 0.08
VPS53-220ENST00000576149 CUX1P39880 1505 aa15.52■□□□□ 0.08
VPS53-220ENST00000576149 CLIP1P30622 1438 aa15.51■□□□□ 0.07
VPS53-220ENST00000576149 TTBK1Q5TCY1 1321 aaPredicted RBP15.48■□□□□ 0.07
VPS53-220ENST00000576149 PRXQ9BXM0 1461 aa15.46■□□□□ 0.07
VPS53-220ENST00000576149 ERICH3Q5RHP9 1530 aa15.46■□□□□ 0.06
VPS53-220ENST00000576149 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.45■□□□□ 0.06
VPS53-220ENST00000576149 VPS8Q8N3P4 1428 aa15.45■□□□□ 0.06
VPS53-220ENST00000576149 PRDM2Q13029 1718 aa15.44■□□□□ 0.06
VPS53-220ENST00000576149 CCER1Q8TC90 406 aaPredicted RBP15.42■□□□□ 0.06
VPS53-220ENST00000576149 KIF27Q86VH2 1401 aa15.42■□□□□ 0.06
VPS53-220ENST00000576149 CADPSQ9ULU8 1353 aa15.42■□□□□ 0.06
VPS53-220ENST00000576149 CC2D2AQ9P2K1 1620 aa15.4■□□□□ 0.06
VPS53-220ENST00000576149 RANGAP1P46060 587 aaPredicted RBP15.33■□□□□ 0.04
VPS53-220ENST00000576149 APLP2Q06481 763 aa15.32■□□□□ 0.04
VPS53-220ENST00000576149 ARAP1Q96P48 1450 aa15.3■□□□□ 0.04
VPS53-220ENST00000576149 CUX2O14529 1486 aa15.28■□□□□ 0.04
VPS53-220ENST00000576149 IGF1RP08069 1367 aa15.26■□□□□ 0.03
VPS53-220ENST00000576149 FGD5Q6ZNL6 1462 aa15.26■□□□□ 0.03
VPS53-220ENST00000576149 FANCD2Q9BXW9 1451 aa15.25■□□□□ 0.03
VPS53-220ENST00000576149 HNRNPUL2Q1KMD3 747 aaKnown RBP15.21■□□□□ 0.02
VPS53-220ENST00000576149 ARHGAP35Q9NRY4 1499 aa15.2■□□□□ 0.02
VPS53-220ENST00000576149 CARMIL1Q5VZK9 1371 aa15.18■□□□□ 0.02
VPS53-220ENST00000576149 DNMBPQ6XZF7 1577 aa15.17■□□□□ 0.02
VPS53-220ENST00000576149 KANK4Q5T7N3 995 aaPredicted RBP15.15■□□□□ 0.02
VPS53-220ENST00000576149 NESP48681 1621 aa15.14■□□□□ 0.01
VPS53-220ENST00000576149 TOPBP1Q92547 1522 aa15.13■□□□□ 0.01
VPS53-220ENST00000576149 ABCA10Q8WWZ4 1543 aa15.12■□□□□ 0.01
VPS53-220ENST00000576149 POLA1P09884 1462 aaPredicted RBP15.12■□□□□ 0.01
VPS53-220ENST00000576149 LAMC3Q9Y6N6 1575 aa15.11■□□□□ 0.01
VPS53-220ENST00000576149 RAD54L2Q9Y4B4 1467 aa15.1■□□□□ 0.01
VPS53-220ENST00000576149 RRBP1Q9P2E9 1410 aaKnown RBP15.08■□□□□ 0
VPS53-220ENST00000576149 MYT1Q01538 1121 aa15.05■□□□□ 0
VPS53-220ENST00000576149 MAP3K1Q13233 1512 aa15.05■□□□□ -0
VPS53-220ENST00000576149 URB2Q14146 1524 aaKnown RBP15.03■□□□□ -0
VPS53-220ENST00000576149 DIEXFQ68CQ4 756 aaKnown RBP15.03■□□□□ -0
VPS53-220ENST00000576149 CUL7Q14999 1698 aa15.01□□□□□ -0.01
VPS53-220ENST00000576149 TIAM1Q13009 1591 aa15.01□□□□□ -0.01
VPS53-220ENST00000576149 FHAD1B1AJZ9 1412 aa15□□□□□ -0.01
VPS53-220ENST00000576149 PDS5BQ9NTI5 1447 aa15□□□□□ -0.01
VPS53-220ENST00000576149 CCNB3Q8WWL7 1395 aa15□□□□□ -0.01
VPS53-220ENST00000576149 WDR97A6NE52 1622 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms