RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 KDM5DQ9BY66 1539 aa31.47■■■□□ 2.63
CLK3-225ENST00000569063 DUOX2Q9NRD8 1548 aa31.46■■■□□ 2.63
CLK3-225ENST00000569063 WASHC2CQ9Y4E1 1318 aa31.46■■■□□ 2.63
CLK3-225ENST00000569063 EIF2AK4Q9P2K8 1649 aaKnown RBP31.46■■■□□ 2.63
CLK3-225ENST00000569063 RNF17Q9BXT8 1623 aaKnown RBP31.44■■■□□ 2.62
CLK3-225ENST00000569063 KIF15Q9NS87 1388 aa31.43■■■□□ 2.62
CLK3-225ENST00000569063 RRP7BPQ9NSQ0 103 aa31.41■■■□□ 2.62
CLK3-225ENST00000569063 STRCQ7RTU9 1775 aa31.38■■■□□ 2.61
CLK3-225ENST00000569063 PZPP20742 1482 aa31.38■■■□□ 2.61
CLK3-225ENST00000569063 FAM50AQ14320 339 aaKnown RBP31.37■■■□□ 2.61
CLK3-225ENST00000569063 ERBINQ96RT1 1412 aa31.37■■■□□ 2.61
CLK3-225ENST00000569063 ANKRD30AQ9BXX3 1397 aa31.36■■■□□ 2.61
CLK3-225ENST00000569063 DMRT2Q9Y5R5 561 aa31.36■■■□□ 2.61
CLK3-225ENST00000569063 MYO3AQ8NEV4 1616 aa31.35■■■□□ 2.61
CLK3-225ENST00000569063 CHIC2Q9UKJ5 165 aa31.34■■■□□ 2.61
CLK3-225ENST00000569063 MROH1Q8NDA8 1641 aa31.34■■■□□ 2.61
CLK3-225ENST00000569063 NCOA1Q15788 1441 aa31.33■■■□□ 2.61
CLK3-225ENST00000569063 FBXO31Q5XUX0 539 aaPredicted RBP31.33■■■□□ 2.61
CLK3-225ENST00000569063 ABCC3O15438 1527 aa31.33■■■□□ 2.61
CLK3-225ENST00000569063 ZNF142P52746 1687 aaPredicted RBP31.32■■■□□ 2.6
CLK3-225ENST00000569063 ZC3H13Q5T200 1668 aaKnown RBP31.32■■■□□ 2.6
CLK3-225ENST00000569063 CEP170BQ9Y4F5 1589 aaPredicted RBP31.3■■■□□ 2.6
CLK3-225ENST00000569063 ADGRL2O95490 1459 aa31.29■■■□□ 2.6
CLK3-225ENST00000569063 ILDR1Q86SU0 546 aaPredicted RBP31.29■■■□□ 2.6
CLK3-225ENST00000569063 TNRQ92752 1358 aa31.29■■■□□ 2.6
CLK3-225ENST00000569063 CAMSAP1Q5T5Y3 1602 aa31.28■■■□□ 2.6
CLK3-225ENST00000569063 A2ML1A8K2U0 1454 aa31.26■■■□□ 2.59
CLK3-225ENST00000569063 PTPRTO14522 1441 aa31.25■■■□□ 2.59
CLK3-225ENST00000569063 PRDM15P57071 1507 aaPredicted RBP31.25■■■□□ 2.59
CLK3-225ENST00000569063 PPARGC1BQ86YN6 1023 aaKnown RBP31.25■■■□□ 2.59
CLK3-225ENST00000569063 PLA2R1Q13018 1463 aa31.22■■■□□ 2.59
CLK3-225ENST00000569063 DEPDC5O75140 1603 aa31.22■■■□□ 2.59
CLK3-225ENST00000569063 CEP152O94986 1710 aa31.2■■■□□ 2.58
CLK3-225ENST00000569063 NLRP1Q9C000 1473 aa31.18■■■□□ 2.58
CLK3-225ENST00000569063 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.17■■■□□ 2.58
CLK3-225ENST00000569063 SPATA31D1Q6ZQQ2 1576 aa31.17■■■□□ 2.58
CLK3-225ENST00000569063 PKD2Q13563 968 aa31.17■■■□□ 2.58
CLK3-225ENST00000569063 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.17■■■□□ 2.583e-9■■■■■ 27.4
CLK3-225ENST00000569063 ARHGAP31Q2M1Z3 1444 aa31.16■■■□□ 2.58
CLK3-225ENST00000569063 NCKAP5LQ9HCH0 1330 aa31.16■■■□□ 2.58
CLK3-225ENST00000569063 KANK1Q14678 1352 aa31.16■■■□□ 2.58
CLK3-225ENST00000569063 ERVK-7P63135 1459 aa31.14■■■□□ 2.58
CLK3-225ENST00000569063 FBXO41Q8TF61 875 aa31.13■■■□□ 2.57
CLK3-225ENST00000569063 ANKRD50Q9ULJ7 1429 aa31.13■■■□□ 2.57
CLK3-225ENST00000569063 ROCK1Q13464 1354 aa31.12■■■□□ 2.57
CLK3-225ENST00000569063 VWDEQ8N2E2 1590 aa31.11■■■□□ 2.57
CLK3-225ENST00000569063 CERKQ8TCT0 537 aa31.11■■■□□ 2.57
CLK3-225ENST00000569063 LMTK2Q8IWU2 1503 aa31.1■■■□□ 2.57
CLK3-225ENST00000569063 THEMISQ8N1K5 641 aaPredicted RBP31.08■■■□□ 2.57
CLK3-225ENST00000569063 UGGT1Q9NYU2 1555 aa31.07■■■□□ 2.56
CLK3-225ENST00000569063 RRBP1Q9P2E9 1410 aaKnown RBP31.02■■■□□ 2.56
CLK3-225ENST00000569063 CFAP65Q6ZU64 1925 aaKnown RBP31.01■■■□□ 2.55
CLK3-225ENST00000569063 ITGAEP38570 1179 aa31.01■■■□□ 2.55
CLK3-225ENST00000569063 ANKLE2Q86XL3 938 aa30.99■■■□□ 2.55
CLK3-225ENST00000569063 LTBP4Q8N2S1 1624 aa30.98■■■□□ 2.55
CLK3-225ENST00000569063 EFCAB6Q5THR3 1501 aa30.97■■■□□ 2.55
CLK3-225ENST00000569063 POLR1AO95602 1720 aaPredicted RBP30.96■■■□□ 2.55
CLK3-225ENST00000569063 NEURL4Q96JN8 1562 aa30.95■■■□□ 2.54
CLK3-225ENST00000569063 UNC13BO14795 1591 aa30.93■■■□□ 2.54
CLK3-225ENST00000569063 UBR1Q8IWV7 1749 aa30.92■■■□□ 2.54
CLK3-225ENST00000569063 NOS1P29475 1434 aa30.9■■■□□ 2.54
CLK3-225ENST00000569063 MED14O60244 1454 aa30.9■■■□□ 2.54
CLK3-225ENST00000569063 RPRD2Q5VT52 1461 aaKnown RBP30.9■■■□□ 2.54
CLK3-225ENST00000569063 ZNF335Q9H4Z2 1342 aaPredicted RBP30.9■■■□□ 2.54
CLK3-225ENST00000569063 TET3O43151 1660 aa30.87■■■□□ 2.53
CLK3-225ENST00000569063 IDI1Q13907 227 aa30.86■■■□□ 2.53
CLK3-225ENST00000569063 NPHP4O75161 1426 aaPredicted RBP30.86■■■□□ 2.53
CLK3-225ENST00000569063 SYNMO15061 1565 aa30.86■■■□□ 2.53
CLK3-225ENST00000569063 PIK3C2BO00750 1634 aa30.84■■■□□ 2.53
CLK3-225ENST00000569063 IQSEC2Q5JU85 1478 aa30.84■■■□□ 2.53
CLK3-225ENST00000569063 SLIT1O75093 1534 aa30.83■■■□□ 2.53
CLK3-225ENST00000569063 ARHGAP23Q9P227 1491 aa30.83■■■□□ 2.53
CLK3-225ENST00000569063 SLC52A1Q9NWF4 448 aa30.83■■■□□ 2.53
CLK3-225ENST00000569063 KDM5AP29375 1690 aaKnown RBP30.82■■■□□ 2.52
CLK3-225ENST00000569063 GCC2Q8IWJ2 1684 aa30.82■■■□□ 2.52
CLK3-225ENST00000569063 IQGAP3Q86VI3 1631 aa30.81■■■□□ 2.52
CLK3-225ENST00000569063 NUP155O75694 1391 aa30.8■■■□□ 2.52
CLK3-225ENST00000569063 STAG3Q9UJ98 1225 aa30.8■■■□□ 2.52
CLK3-225ENST00000569063 SCAF11Q99590 1463 aaKnown RBP30.79■■■□□ 2.52
CLK3-225ENST00000569063 IQGAP1P46940 1657 aa30.78■■■□□ 2.52
CLK3-225ENST00000569063 LTKP29376 864 aa30.77■■■□□ 2.52
CLK3-225ENST00000569063 TXNDC2Q86VQ3 553 aa30.77■■■□□ 2.52
CLK3-225ENST00000569063 TMEM2Q9UHN6 1383 aa30.77■■■□□ 2.52
CLK3-225ENST00000569063 EID1Q9Y6B2 187 aa30.75■■■□□ 2.51
CLK3-225ENST00000569063 NAIPQ13075 1403 aa30.74■■■□□ 2.51
CLK3-225ENST00000569063 E9PCH4 1651 aa30.74■■■□□ 2.51
CLK3-225ENST00000569063 ADGRB3O60242 1522 aa30.72■■■□□ 2.51
CLK3-225ENST00000569063 CPS1P31327 1500 aa30.71■■■□□ 2.51
CLK3-225ENST00000569063 HFM1A2PYH4 1435 aa30.68■■■□□ 2.5
CLK3-225ENST00000569063 TMEM131LA2VDJ0 1609 aa30.61■■■□□ 2.49
CLK3-225ENST00000569063 ZFYVE9O95405 1425 aa30.56■■■□□ 2.48
CLK3-225ENST00000569063 UBAP1LF5GYI3 381 aa30.56■■■□□ 2.48
CLK3-225ENST00000569063 HDGFP51858 240 aaKnown RBP30.56■■■□□ 2.48
CLK3-225ENST00000569063 STRCP1A6NGW2 1772 aa30.56■■■□□ 2.48
CLK3-225ENST00000569063 MYO5BQ9ULV0 1848 aa30.55■■■□□ 2.48
CLK3-225ENST00000569063 CHGAP10645 457 aaKnown RBP30.53■■■□□ 2.48
CLK3-225ENST00000569063 RIMS2Q9UQ26 1411 aa30.53■■■□□ 2.48
CLK3-225ENST00000569063 SPHKAPQ2M3C7 1700 aa30.51■■■□□ 2.47
CLK3-225ENST00000569063 LRRC7Q96NW7 1537 aa30.51■■■□□ 2.47
CLK3-225ENST00000569063 TRIM52Q96A61 297 aa30.5■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms