RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 PLXNC1O60486 1568 aa16.68■□□□□ 0.26
SF3B3-205ENST00000564899 CEP170BQ9Y4F5 1589 aaPredicted RBP16.68■□□□□ 0.26
SF3B3-205ENST00000564899 DNMT1P26358 1616 aaKnown RBP16.67■□□□□ 0.26
SF3B3-205ENST00000564899 ABCC5O15440 1437 aa16.67■□□□□ 0.26
SF3B3-205ENST00000564899 PTPRKQ15262 1439 aa16.67■□□□□ 0.26
SF3B3-205ENST00000564899 KIAA1107Q9UPP5 1409 aa16.67■□□□□ 0.26
SF3B3-205ENST00000564899 HNRNPMP52272 730 aaKnown RBP eCLIP16.66■□□□□ 0.26
SF3B3-205ENST00000564899 INO80Q9ULG1 1556 aaPredicted RBP16.66■□□□□ 0.26
SF3B3-205ENST00000564899 ATP7AQ04656 1500 aa16.65■□□□□ 0.26
SF3B3-205ENST00000564899 MBD5Q9P267 1494 aa16.65■□□□□ 0.26
SF3B3-205ENST00000564899 ARHGEF5Q12774 1597 aa16.64■□□□□ 0.25
SF3B3-205ENST00000564899 PLA2R1Q13018 1463 aa16.64■□□□□ 0.25
SF3B3-205ENST00000564899 CCDC141Q6ZP82 1450 aa16.64■□□□□ 0.25
SF3B3-205ENST00000564899 SPAG9O60271 1321 aaKnown RBP16.63■□□□□ 0.25
SF3B3-205ENST00000564899 RSPH4AQ5TD94 716 aa16.62■□□□□ 0.25
SF3B3-205ENST00000564899 MED1Q15648 1581 aaPredicted RBP16.62■□□□□ 0.25
SF3B3-205ENST00000564899 A2MP01023 1474 aa16.61■□□□□ 0.25
SF3B3-205ENST00000564899 SHANK2Q9UPX8 1470 aa16.61■□□□□ 0.25
SF3B3-205ENST00000564899 CHIC2Q9UKJ5 165 aa16.61■□□□□ 0.25
SF3B3-205ENST00000564899 CROCC2H7BZ55 1655 aa16.6■□□□□ 0.25
SF3B3-205ENST00000564899 HSPA1LP34931 641 aa16.6■□□□□ 0.25
SF3B3-205ENST00000564899 NEURL4Q96JN8 1562 aa16.6■□□□□ 0.25
SF3B3-205ENST00000564899 TSPY4P0CV99 314 aa16.59■□□□□ 0.25
SF3B3-205ENST00000564899 TSPY10P0CW01 314 aa16.59■□□□□ 0.25
SF3B3-205ENST00000564899 GGT6Q6P531 493 aa16.59■□□□□ 0.25
SF3B3-205ENST00000564899 PKD2Q13563 968 aa16.58■□□□□ 0.24
SF3B3-205ENST00000564899 ROCK1Q13464 1354 aa16.58■□□□□ 0.24
SF3B3-205ENST00000564899 ALKQ9UM73 1620 aa16.57■□□□□ 0.24
SF3B3-205ENST00000564899 PIP4K2BP78356 416 aa16.57■□□□□ 0.24
SF3B3-205ENST00000564899 PPP6R1Q9UPN7 881 aa16.57■□□□□ 0.24
SF3B3-205ENST00000564899 ADGRL2O95490 1459 aa16.56■□□□□ 0.24
SF3B3-205ENST00000564899 HFM1A2PYH4 1435 aa16.56■□□□□ 0.24
SF3B3-205ENST00000564899 A2ML1A8K2U0 1454 aa16.55■□□□□ 0.24
SF3B3-205ENST00000564899 SETD5Q9C0A6 1442 aa16.55■□□□□ 0.24
SF3B3-205ENST00000564899 SCAF1Q9H7N4 1312 aaKnown RBP16.55■□□□□ 0.24
SF3B3-205ENST00000564899 RRP7BPQ9NSQ0 103 aa16.55■□□□□ 0.24
SF3B3-205ENST00000564899 MAST1Q9Y2H9 1570 aa16.55■□□□□ 0.24
SF3B3-205ENST00000564899 ANKRD30AQ9BXX3 1397 aa16.54■□□□□ 0.24
SF3B3-205ENST00000564899 FBXO31Q5XUX0 539 aaPredicted RBP16.54■□□□□ 0.24
SF3B3-205ENST00000564899 NAIPQ13075 1403 aa16.53■□□□□ 0.24
SF3B3-205ENST00000564899 ADGBQ8N7X0 1667 aa16.53■□□□□ 0.24
SF3B3-205ENST00000564899 POLR1AO95602 1720 aaPredicted RBP16.53■□□□□ 0.24
SF3B3-205ENST00000564899 RAB3GAP2Q9H2M9 1393 aa16.52■□□□□ 0.24
SF3B3-205ENST00000564899 VWDEQ8N2E2 1590 aa16.51■□□□□ 0.23
SF3B3-205ENST00000564899 GCC2Q8IWJ2 1684 aa16.5■□□□□ 0.23
SF3B3-205ENST00000564899 RTEL1-TNFRSF6BF6WH68 1400 aa16.49■□□□□ 0.23
SF3B3-205ENST00000564899 KIF15Q9NS87 1388 aa16.49■□□□□ 0.23
SF3B3-205ENST00000564899 CPS1P31327 1500 aa16.48■□□□□ 0.23
SF3B3-205ENST00000564899 SENP3Q9H4L4 574 aaPredicted RBP16.47■□□□□ 0.23
SF3B3-205ENST00000564899 TNRQ92752 1358 aa16.47■□□□□ 0.23
SF3B3-205ENST00000564899 STRCP1A6NGW2 1772 aa16.46■□□□□ 0.23
SF3B3-205ENST00000564899 HRCP23327 699 aa16.45■□□□□ 0.22
SF3B3-205ENST00000564899 ANKRD50Q9ULJ7 1429 aa16.45■□□□□ 0.22
SF3B3-205ENST00000564899 PZPP20742 1482 aa16.44■□□□□ 0.22
SF3B3-205ENST00000564899 DHX29Q7Z478 1369 aaKnown RBP16.43■□□□□ 0.22
SF3B3-205ENST00000564899 TOM1O60784 492 aa16.43■□□□□ 0.22
SF3B3-205ENST00000564899 KDM5DQ9BY66 1539 aa16.43■□□□□ 0.22
SF3B3-205ENST00000564899 DUOX2Q9NRD8 1548 aa16.42■□□□□ 0.22
SF3B3-205ENST00000564899 KIF3BO15066 747 aa16.41■□□□□ 0.22
SF3B3-205ENST00000564899 NPHP4O75161 1426 aaPredicted RBP16.4■□□□□ 0.22
SF3B3-205ENST00000564899 UGGT1Q9NYU2 1555 aa16.39■□□□□ 0.21
SF3B3-205ENST00000564899 ERBINQ96RT1 1412 aa16.39■□□□□ 0.21
SF3B3-205ENST00000564899 MED14O60244 1454 aa16.39■□□□□ 0.21
SF3B3-205ENST00000564899 IQGAP1P46940 1657 aa16.38■□□□□ 0.21
SF3B3-205ENST00000564899 LRRC7Q96NW7 1537 aa16.38■□□□□ 0.21
SF3B3-205ENST00000564899 ACIN1Q9UKV3 1341 aaKnown RBP16.38■□□□□ 0.21
SF3B3-205ENST00000564899 DEPDC5O75140 1603 aa16.37■□□□□ 0.21
SF3B3-205ENST00000564899 ANKLE2Q86XL3 938 aa16.37■□□□□ 0.21
SF3B3-205ENST00000564899 CCER1Q8TC90 406 aaPredicted RBP16.37■□□□□ 0.21
SF3B3-205ENST00000564899 PHF23Q9BUL5 403 aaPredicted RBP16.37■□□□□ 0.21
SF3B3-205ENST00000564899 DHX57Q6P158 1386 aaKnown RBP16.37■□□□□ 0.21
SF3B3-205ENST00000564899 TRIM52Q96A61 297 aa16.36■□□□□ 0.21
SF3B3-205ENST00000564899 RGS17Q9UGC6 210 aaPredicted RBP16.36■□□□□ 0.21
SF3B3-205ENST00000564899 WASHC2CQ9Y4E1 1318 aa16.35■□□□□ 0.21
SF3B3-205ENST00000564899 NLRP1Q9C000 1473 aa16.35■□□□□ 0.21
SF3B3-205ENST00000564899 RNF17Q9BXT8 1623 aaKnown RBP16.34■□□□□ 0.21
SF3B3-205ENST00000564899 ZC3H13Q5T200 1668 aaKnown RBP16.34■□□□□ 0.21
SF3B3-205ENST00000564899 FAM135AQ9P2D6 1515 aa16.33■□□□□ 0.2
SF3B3-205ENST00000564899 THEMISQ8N1K5 641 aaPredicted RBP16.32■□□□□ 0.2
SF3B3-205ENST00000564899 ABCC3O15438 1527 aa16.31■□□□□ 0.2
SF3B3-205ENST00000564899 XIRP1Q702N8 1843 aaKnown RBP16.31■□□□□ 0.2
SF3B3-205ENST00000564899 EIF2AK4Q9P2K8 1649 aaKnown RBP16.3■□□□□ 0.2
SF3B3-205ENST00000564899 SYNMO15061 1565 aa16.3■□□□□ 0.2
SF3B3-205ENST00000564899 MROH1Q8NDA8 1641 aa16.3■□□□□ 0.2
SF3B3-205ENST00000564899 UNC13BO14795 1591 aa16.3■□□□□ 0.2
SF3B3-205ENST00000564899 NUP155O75694 1391 aa16.29■□□□□ 0.2
SF3B3-205ENST00000564899 ERVK-7P63135 1459 aa16.29■□□□□ 0.2
SF3B3-205ENST00000564899 UBR1Q8IWV7 1749 aa16.28■□□□□ 0.2
SF3B3-205ENST00000564899 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.27■□□□□ 0.2
SF3B3-205ENST00000564899 CFAP65Q6ZU64 1925 aaKnown RBP16.27■□□□□ 0.19
SF3B3-205ENST00000564899 CEP152O94986 1710 aa16.26■□□□□ 0.19
SF3B3-205ENST00000564899 MPHOSPH9Q99550 1183 aa16.26■□□□□ 0.19
SF3B3-205ENST00000564899 LTKP29376 864 aa16.25■□□□□ 0.19
SF3B3-205ENST00000564899 SLC4A1APQ9BWU0 796 aaKnown RBP16.25■□□□□ 0.19
SF3B3-205ENST00000564899 CLSPNQ9HAW4 1339 aa16.24■□□□□ 0.19
SF3B3-205ENST00000564899 PRDM15P57071 1507 aaPredicted RBP16.23■□□□□ 0.19
SF3B3-205ENST00000564899 KANK1Q14678 1352 aa16.23■□□□□ 0.19
SF3B3-205ENST00000564899 SCAF11Q99590 1463 aaKnown RBP16.22■□□□□ 0.19
SF3B3-205ENST00000564899 POTEAQ6S8J7 498 aa16.22■□□□□ 0.19
SF3B3-205ENST00000564899 IQGAP3Q86VI3 1631 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms