RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 NISCHQ9Y2I1 1504 aa25.93■■□□□ 1.74
SF3B3-205ENST00000564899 ABCC9O60706 1549 aa23.89■■□□□ 1.42
SF3B3-205ENST00000564899 CCDC180Q9P1Z9 1646 aa23.38■■□□□ 1.33
SF3B3-205ENST00000564899 DNAJC5BQ9UF47 199 aa22.85■■□□□ 1.25
SF3B3-205ENST00000564899 RB1CC1Q8TDY2 1594 aa22.44■■□□□ 1.18
SF3B3-205ENST00000564899 PABPN1Q86U42 306 aaKnown RBP eCLIP22.2■■□□□ 1.14
SF3B3-205ENST00000564899 NACADO15069 1562 aa22.18■■□□□ 1.14
SF3B3-205ENST00000564899 UNC13AQ9UPW8 1703 aa22.07■■□□□ 1.12
SF3B3-205ENST00000564899 DCAF8L2P0C7V8 631 aa22.04■■□□□ 1.12
SF3B3-205ENST00000564899 BICRAQ9NZM4 1560 aa21.95■■□□□ 1.11
SF3B3-205ENST00000564899 MYO15BQ96JP2 1530 aa21.71■■□□□ 1.07
SF3B3-205ENST00000564899 ZCCHC6Q5VYS8 1495 aaKnown RBP21.58■■□□□ 1.04
SF3B3-205ENST00000564899 CC2D2AQ9P2K1 1620 aa21.54■■□□□ 1.04
SF3B3-205ENST00000564899 CECR2Q9BXF3 1484 aa21.51■■□□□ 1.03
SF3B3-205ENST00000564899 SCRIBQ14160 1630 aa21.41■■□□□ 1.02
SF3B3-205ENST00000564899 SHROOM4Q9ULL8 1493 aa21.39■■□□□ 1.02
SF3B3-205ENST00000564899 EIF4G1Q04637 1599 aaKnown RBP21.38■■□□□ 1.01
SF3B3-205ENST00000564899 DCAF1Q9Y4B6 1507 aa21.32■■□□□ 1
SF3B3-205ENST00000564899 DNAJC5Q9H3Z4 198 aa21.11■□□□□ 0.97
SF3B3-205ENST00000564899 CUX2O14529 1486 aa20.62■□□□□ 0.89
SF3B3-205ENST00000564899 ERCC6Q03468 1493 aa20.56■□□□□ 0.88
SF3B3-205ENST00000564899 NCAPD3P42695 1498 aa20.51■□□□□ 0.87
SF3B3-205ENST00000564899 NESP48681 1621 aa20.46■□□□□ 0.87
SF3B3-205ENST00000564899 ATAD2BQ9ULI0 1458 aa20.44■□□□□ 0.86
SF3B3-205ENST00000564899 SMARCA4P51532 1647 aa20.34■□□□□ 0.85
SF3B3-205ENST00000564899 HMGXB3Q12766 1538 aa20.32■□□□□ 0.84
SF3B3-205ENST00000564899 SMARCA2P51531 1590 aa20.29■□□□□ 0.84
SF3B3-205ENST00000564899 THOC2Q8NI27 1593 aaKnown RBP20.29■□□□□ 0.84
SF3B3-205ENST00000564899 BAZ1BQ9UIG0 1483 aaKnown RBP20.19■□□□□ 0.82
SF3B3-205ENST00000564899 KIF21AQ7Z4S6 1674 aa20.14■□□□□ 0.81
SF3B3-205ENST00000564899 BAZ1AQ9NRL2 1556 aaPredicted RBP20.11■□□□□ 0.81
SF3B3-205ENST00000564899 PEG3Q9GZU2 1588 aa20.1■□□□□ 0.81
SF3B3-205ENST00000564899 LAMC3Q9Y6N6 1575 aa20.09■□□□□ 0.81
SF3B3-205ENST00000564899 MROH2BQ7Z745 1585 aa20.06■□□□□ 0.8
SF3B3-205ENST00000564899 TRIM41Q8WV44 630 aa20.06■□□□□ 0.8
SF3B3-205ENST00000564899 PDS5BQ9NTI5 1447 aa19.95■□□□□ 0.78
SF3B3-205ENST00000564899 MRC2Q9UBG0 1479 aa19.88■□□□□ 0.77
SF3B3-205ENST00000564899 CADPSQ9ULU8 1353 aa19.87■□□□□ 0.77
SF3B3-205ENST00000564899 WDR62O43379 1518 aa19.86■□□□□ 0.77
SF3B3-205ENST00000564899 RSF1Q96T23 1441 aaPredicted RBP19.84■□□□□ 0.77
SF3B3-205ENST00000564899 SUPT5HO00267 1087 aaKnown RBP19.8■□□□□ 0.76
SF3B3-205ENST00000564899 WIZO95785 1651 aa19.8■□□□□ 0.76
SF3B3-205ENST00000564899 CEP164Q9UPV0 1460 aa19.71■□□□□ 0.75
SF3B3-205ENST00000564899 FANCD2Q9BXW9 1451 aa19.68■□□□□ 0.74
SF3B3-205ENST00000564899 URB2Q14146 1524 aaKnown RBP19.61■□□□□ 0.73
SF3B3-205ENST00000564899 OSCARQ8IYS5 282 aa19.6■□□□□ 0.73
SF3B3-205ENST00000564899 CFTRP13569 1480 aa19.59■□□□□ 0.73
SF3B3-205ENST00000564899 RIMBP3CA6NJZ7 1639 aa19.51■□□□□ 0.71
SF3B3-205ENST00000564899 RIMBP3BA6NNM3 1639 aa19.51■□□□□ 0.71
SF3B3-205ENST00000564899 RIMBP3Q9UFD9 1639 aa19.51■□□□□ 0.71
SF3B3-205ENST00000564899 TOP2AP11388 1531 aaKnown RBP19.5■□□□□ 0.71
SF3B3-205ENST00000564899 ZNF608Q9ULD9 1512 aaPredicted RBP19.46■□□□□ 0.71
SF3B3-205ENST00000564899 ARHGEF11O15085 1522 aa19.4■□□□□ 0.7
SF3B3-205ENST00000564899 PRDM2Q13029 1718 aa19.34■□□□□ 0.69
SF3B3-205ENST00000564899 IFT140Q96RY7 1462 aa19.31■□□□□ 0.68
SF3B3-205ENST00000564899 TOPBP1Q92547 1522 aa19.29■□□□□ 0.68
SF3B3-205ENST00000564899 EIF4G3O43432 1585 aaKnown RBP19.28■□□□□ 0.68
SF3B3-205ENST00000564899 CCDC88BA6NC98 1476 aa19.27■□□□□ 0.67
SF3B3-205ENST00000564899 CYB5RLQ6IPT4 315 aa19.24■□□□□ 0.67
SF3B3-205ENST00000564899 CHD1O14646 1710 aa19.22■□□□□ 0.67
SF3B3-205ENST00000564899 ARAP1Q96P48 1450 aa19.22■□□□□ 0.67
SF3B3-205ENST00000564899 AQRO60306 1485 aaKnown RBP eCLIP19.19■□□□□ 0.663e-14■■■■■ 35.6
SF3B3-205ENST00000564899 TARBP1Q13395 1621 aaKnown RBP19.17■□□□□ 0.66
SF3B3-205ENST00000564899 DNMBPQ6XZF7 1577 aa19.15■□□□□ 0.66
SF3B3-205ENST00000564899 TRHP20396 242 aaPredicted RBP19.11■□□□□ 0.65
SF3B3-205ENST00000564899 FBLN2P98095 1184 aa19.08■□□□□ 0.64
SF3B3-205ENST00000564899 POLA1P09884 1462 aaPredicted RBP19.07■□□□□ 0.64
SF3B3-205ENST00000564899 RAD54L2Q9Y4B4 1467 aa19.06■□□□□ 0.64
SF3B3-205ENST00000564899 ABCC8Q09428 1581 aa19.06■□□□□ 0.64
SF3B3-205ENST00000564899 TDRD9Q8NDG6 1382 aaKnown RBP19.01■□□□□ 0.63
SF3B3-205ENST00000564899 CLASP1Q7Z460 1538 aa18.98■□□□□ 0.63
SF3B3-205ENST00000564899 SNAPC4Q5SXM2 1469 aa18.97■□□□□ 0.63
SF3B3-205ENST00000564899 SOGA1O94964 1423 aa18.92■□□□□ 0.62
SF3B3-205ENST00000564899 FGD5Q6ZNL6 1462 aa18.9■□□□□ 0.62
SF3B3-205ENST00000564899 CUX1P39880 1505 aa18.85■□□□□ 0.61
SF3B3-205ENST00000564899 SYNJ1O43426 1573 aa18.84■□□□□ 0.61
SF3B3-205ENST00000564899 CHMP7Q8WUX9 453 aaPredicted RBP18.82■□□□□ 0.6
SF3B3-205ENST00000564899 MAGI1Q96QZ7 1491 aaPredicted RBP18.82■□□□□ 0.6
SF3B3-205ENST00000564899 CHIC1Q5VXU3 224 aa18.8■□□□□ 0.6
SF3B3-205ENST00000564899 WDR97A6NE52 1622 aa18.8■□□□□ 0.6
SF3B3-205ENST00000564899 SYNJ2O15056 1496 aa18.79■□□□□ 0.6
SF3B3-205ENST00000564899 GRIN2BQ13224 1484 aa18.79■□□□□ 0.6
SF3B3-205ENST00000564899 AEBP2Q6ZN18 517 aaPredicted RBP18.77■□□□□ 0.6
SF3B3-205ENST00000564899 GAPVD1Q14C86 1478 aa18.77■□□□□ 0.59
SF3B3-205ENST00000564899 ERCC6L2Q5T890 1561 aa18.76■□□□□ 0.59
SF3B3-205ENST00000564899 PBRM1Q86U86 1689 aa18.75■□□□□ 0.59
SF3B3-205ENST00000564899 WRNQ14191 1432 aaPredicted RBP eCLIP18.7■□□□□ 0.58
SF3B3-205ENST00000564899 ABCA5Q8WWZ7 1642 aa18.67■□□□□ 0.58
SF3B3-205ENST00000564899 ABCA10Q8WWZ4 1543 aa18.62■□□□□ 0.57
SF3B3-205ENST00000564899 CEP170Q5SW79 1584 aa18.6■□□□□ 0.57
SF3B3-205ENST00000564899 GRIN2AQ12879 1464 aa18.58■□□□□ 0.57
SF3B3-205ENST00000564899 TOP2BQ02880 1626 aa18.56■□□□□ 0.56
SF3B3-205ENST00000564899 ADAMTS12P58397 1594 aa18.56■□□□□ 0.56
SF3B3-205ENST00000564899 BIVM-ERCC5R4GMW8 1640 aa18.55■□□□□ 0.56
SF3B3-205ENST00000564899 NUP160Q12769 1436 aa18.54■□□□□ 0.56
SF3B3-205ENST00000564899 KIF13AQ9H1H9 1805 aa18.52■□□□□ 0.56
SF3B3-205ENST00000564899 SHROOM2Q13796 1616 aa18.52■□□□□ 0.55
SF3B3-205ENST00000564899 FHAD1B1AJZ9 1412 aa18.41■□□□□ 0.54
SF3B3-205ENST00000564899 PRG4Q92954 1404 aaPredicted RBP18.4■□□□□ 0.54
SF3B3-205ENST00000564899 ERICH3Q5RHP9 1530 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms