RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MYO3AQ8NEV4 1616 aa26.75■■□□□ 1.87
CLN3-211ENST00000564091 TCOF1Q13428 1488 aaKnown RBP26.74■■□□□ 1.87
CLN3-211ENST00000564091 LRRC9Q6ZRR7 1453 aa26.74■■□□□ 1.87
CLN3-211ENST00000564091 TNRQ92752 1358 aa26.73■■□□□ 1.87
CLN3-211ENST00000564091 A2ML1A8K2U0 1454 aa26.71■■□□□ 1.87
CLN3-211ENST00000564091 DISP3Q9P2K9 1392 aa26.71■■□□□ 1.87
CLN3-211ENST00000564091 IQSEC2Q5JU85 1478 aa26.69■■□□□ 1.86
CLN3-211ENST00000564091 ZNF142P52746 1687 aaPredicted RBP26.67■■□□□ 1.86
CLN3-211ENST00000564091 UBAP1LF5GYI3 381 aa26.67■■□□□ 1.86
CLN3-211ENST00000564091 PZPP20742 1482 aa26.67■■□□□ 1.86
CLN3-211ENST00000564091 KDM5DQ9BY66 1539 aa26.66■■□□□ 1.86
CLN3-211ENST00000564091 ARHGEF5Q12774 1597 aa26.66■■□□□ 1.86
CLN3-211ENST00000564091 MIA2Q96PC5 1412 aa26.64■■□□□ 1.85
CLN3-211ENST00000564091 ILDR2Q71H61 639 aa26.63■■□□□ 1.85
CLN3-211ENST00000564091 DNMT1P26358 1616 aaKnown RBP26.62■■□□□ 1.85
CLN3-211ENST00000564091 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.6■■□□□ 1.85
CLN3-211ENST00000564091 ANKLE2Q86XL3 938 aa26.6■■□□□ 1.85
CLN3-211ENST00000564091 THEMISQ8N1K5 641 aaPredicted RBP26.6■■□□□ 1.85
CLN3-211ENST00000564091 FAM135AQ9P2D6 1515 aa26.59■■□□□ 1.85
CLN3-211ENST00000564091 MYOM3Q5VTT5 1437 aa26.58■■□□□ 1.85
CLN3-211ENST00000564091 MAP3K1Q13233 1512 aa26.57■■□□□ 1.84
CLN3-211ENST00000564091 NLRP1Q9C000 1473 aa26.53■■□□□ 1.84
CLN3-211ENST00000564091 MAST1Q9Y2H9 1570 aa26.51■■□□□ 1.83
CLN3-211ENST00000564091 ABCC3O15438 1527 aa26.51■■□□□ 1.83
CLN3-211ENST00000564091 NEURL4Q96JN8 1562 aa26.5■■□□□ 1.83
CLN3-211ENST00000564091 APLP2Q06481 763 aa26.5■■□□□ 1.83
CLN3-211ENST00000564091 UGGT1Q9NYU2 1555 aa26.5■■□□□ 1.83
CLN3-211ENST00000564091 RRP7BPQ9NSQ0 103 aa26.49■■□□□ 1.83
CLN3-211ENST00000564091 SHANK2Q9UPX8 1470 aa26.49■■□□□ 1.83
CLN3-211ENST00000564091 NPHP4O75161 1426 aaPredicted RBP26.48■■□□□ 1.83
CLN3-211ENST00000564091 SCAF1Q9H7N4 1312 aaKnown RBP26.46■■□□□ 1.83
CLN3-211ENST00000564091 PIP4K2BP78356 416 aa26.46■■□□□ 1.83
CLN3-211ENST00000564091 ABCC5O15440 1437 aa26.46■■□□□ 1.83
CLN3-211ENST00000564091 KIF15Q9NS87 1388 aa26.46■■□□□ 1.83
CLN3-211ENST00000564091 RNF17Q9BXT8 1623 aaKnown RBP26.45■■□□□ 1.82
CLN3-211ENST00000564091 ERVK-7P63135 1459 aa26.44■■□□□ 1.82
CLN3-211ENST00000564091 TOM1O60784 492 aa26.43■■□□□ 1.82
CLN3-211ENST00000564091 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.43■■□□□ 1.82
CLN3-211ENST00000564091 SPATA31D1Q6ZQQ2 1576 aa26.42■■□□□ 1.82
CLN3-211ENST00000564091 SOCS7O14512 581 aa26.42■■□□□ 1.82
CLN3-211ENST00000564091 DUOX2Q9NRD8 1548 aa26.42■■□□□ 1.82
CLN3-211ENST00000564091 MED14O60244 1454 aa26.42■■□□□ 1.82
CLN3-211ENST00000564091 CPS1P31327 1500 aa26.41■■□□□ 1.82
CLN3-211ENST00000564091 MROH1Q8NDA8 1641 aa26.41■■□□□ 1.82
CLN3-211ENST00000564091 HSPA1LP34931 641 aa26.4■■□□□ 1.82
CLN3-211ENST00000564091 CHIC2Q9UKJ5 165 aa26.39■■□□□ 1.82
CLN3-211ENST00000564091 EIF2AK4Q9P2K8 1649 aaKnown RBP26.38■■□□□ 1.81
CLN3-211ENST00000564091 VWDEQ8N2E2 1590 aa26.37■■□□□ 1.81
CLN3-211ENST00000564091 POLR1AO95602 1720 aaPredicted RBP26.36■■□□□ 1.81
CLN3-211ENST00000564091 DAPK1P53355 1430 aa26.35■■□□□ 1.81
CLN3-211ENST00000564091 FGD6Q6ZV73 1430 aa26.35■■□□□ 1.81
CLN3-211ENST00000564091 ERBINQ96RT1 1412 aa26.35■■□□□ 1.81
CLN3-211ENST00000564091 LTKP29376 864 aa26.34■■□□□ 1.81
CLN3-211ENST00000564091 ZC3H13Q5T200 1668 aaKnown RBP26.34■■□□□ 1.81
CLN3-211ENST00000564091 TXNDC2Q86VQ3 553 aa26.33■■□□□ 1.81
CLN3-211ENST00000564091 DEPDC5O75140 1603 aa26.32■■□□□ 1.8
CLN3-211ENST00000564091 PTPN23Q9H3S7 1636 aa26.32■■□□□ 1.8
CLN3-211ENST00000564091 ARHGAP31Q2M1Z3 1444 aa26.32■■□□□ 1.8
CLN3-211ENST00000564091 ANKRD30AQ9BXX3 1397 aa26.29■■□□□ 1.8
CLN3-211ENST00000564091 KANK1Q14678 1352 aa26.28■■□□□ 1.8
CLN3-211ENST00000564091 PRDM15P57071 1507 aaPredicted RBP26.28■■□□□ 1.8
CLN3-211ENST00000564091 SCAF11Q99590 1463 aaKnown RBP26.27■■□□□ 1.8
CLN3-211ENST00000564091 CEP152O94986 1710 aa26.27■■□□□ 1.8
CLN3-211ENST00000564091 STAG3Q9UJ98 1225 aa26.26■■□□□ 1.79
CLN3-211ENST00000564091 IQGAP1P46940 1657 aa26.25■■□□□ 1.79
CLN3-211ENST00000564091 EID1Q9Y6B2 187 aa26.25■■□□□ 1.79
CLN3-211ENST00000564091 LRRC7Q96NW7 1537 aa26.24■■□□□ 1.79
CLN3-211ENST00000564091 IDI1Q13907 227 aa26.24■■□□□ 1.79
CLN3-211ENST00000564091 SENP3Q9H4L4 574 aaPredicted RBP26.24■■□□□ 1.79
CLN3-211ENST00000564091 FAM50AQ14320 339 aaKnown RBP26.23■■□□□ 1.79
CLN3-211ENST00000564091 ARHGAP23Q9P227 1491 aa26.23■■□□□ 1.79
CLN3-211ENST00000564091 TMEM2Q9UHN6 1383 aa26.2■■□□□ 1.79
CLN3-211ENST00000564091 SLIT1O75093 1534 aa26.2■■□□□ 1.79
CLN3-211ENST00000564091 ALKQ9UM73 1620 aa26.2■■□□□ 1.78
CLN3-211ENST00000564091 UBR1Q8IWV7 1749 aa26.19■■□□□ 1.78
CLN3-211ENST00000564091 CROCC2H7BZ55 1655 aa26.19■■□□□ 1.78
CLN3-211ENST00000564091 CFAP65Q6ZU64 1925 aaKnown RBP26.18■■□□□ 1.78
CLN3-211ENST00000564091 LMTK2Q8IWU2 1503 aa26.15■■□□□ 1.78
CLN3-211ENST00000564091 STRCP1A6NGW2 1772 aa26.14■■□□□ 1.78
CLN3-211ENST00000564091 SLC26A8Q96RN1 970 aa26.12■■□□□ 1.77
CLN3-211ENST00000564091 NOS1P29475 1434 aa26.11■■□□□ 1.77
CLN3-211ENST00000564091 ADGRL2O95490 1459 aa26.11■■□□□ 1.77
CLN3-211ENST00000564091 PIK3C2BO00750 1634 aa26.1■■□□□ 1.77
CLN3-211ENST00000564091 ANKRD50Q9ULJ7 1429 aa26.1■■□□□ 1.77
CLN3-211ENST00000564091 MED1Q15648 1581 aaPredicted RBP26.09■■□□□ 1.77
CLN3-211ENST00000564091 SLC52A1Q9NWF4 448 aa26.09■■□□□ 1.77
CLN3-211ENST00000564091 EFCAB6Q5THR3 1501 aa26.09■■□□□ 1.77
CLN3-211ENST00000564091 KCNA6P17658 529 aa26.07■■□□□ 1.76
CLN3-211ENST00000564091 PHF23Q9BUL5 403 aaPredicted RBP26.07■■□□□ 1.76
CLN3-211ENST00000564091 SYNMO15061 1565 aa26.07■■□□□ 1.76
CLN3-211ENST00000564091 RBM33Q96EV2 1170 aaKnown RBP26.06■■□□□ 1.76
CLN3-211ENST00000564091 BCANQ96GW7 911 aa26.05■■□□□ 1.76
CLN3-211ENST00000564091 TMEM94Q12767 1356 aa26.05■■□□□ 1.76
CLN3-211ENST00000564091 PROSER2Q86WR7 435 aaPredicted RBP26.02■■□□□ 1.76
CLN3-211ENST00000564091 ADGRB3O60242 1522 aa25.98■■□□□ 1.75
CLN3-211ENST00000564091 TET3O43151 1660 aa25.97■■□□□ 1.75
CLN3-211ENST00000564091 RPRD2Q5VT52 1461 aaKnown RBP25.96■■□□□ 1.75
CLN3-211ENST00000564091 PPP1R15AO75807 674 aaPredicted RBP25.95■■□□□ 1.74
CLN3-211ENST00000564091 CHGAP10645 457 aaKnown RBP25.95■■□□□ 1.74
CLN3-211ENST00000564091 FAM135BQ49AJ0 1406 aa25.95■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms